Wall clock time and date at job start Fri Apr 10 2020 18:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34770 * 120.00617 * 2 1 4 4 O 1.21287 * 119.99447 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00695 * 179.97438 * 3 2 1 6 6 C 1.52997 * 110.30430 * 300.70428 * 5 3 2 7 7 C 1.54285 * 110.34376 * 178.52282 * 5 3 2 8 8 C 1.54390 * 104.96231 * 241.02697 * 7 5 3 9 9 N 1.48142 * 104.61475 * 23.86591 * 8 7 5 10 10 C 1.34785 * 127.83203 * 140.39596 * 9 8 7 11 11 O 1.21591 * 119.99648 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00066 * 0.02562 * 10 9 8 13 13 C 1.46504 * 119.99897 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.46895 * 180.02562 * 13 12 10 15 15 O 1.21294 * 120.00650 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99748 * 180.02562 * 14 13 12 17 17 C 1.37104 * 119.99921 * 179.97438 * 16 14 13 18 18 H 1.07997 * 119.99716 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99744 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00244 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99856 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46933 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47053 * 119.99831 * 21 19 17 24 24 H 1.48503 * 109.47154 * 240.00105 * 21 19 17 25 25 C 1.48139 * 104.32965 * 320.41517 * 9 8 7 26 26 H 1.08999 * 109.47382 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47023 * 300.00063 * 1 2 3 28 28 H 1.08995 * 109.46961 * 60.00247 * 1 2 3 29 29 H 0.97011 * 119.99897 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47153 * 297.82008 * 6 5 3 31 31 H 1.09001 * 109.46832 * 177.82199 * 6 5 3 32 32 H 1.09004 * 109.47261 * 57.82180 * 6 5 3 33 33 H 1.09002 * 110.34506 * 359.90092 * 7 5 3 34 34 H 1.09005 * 110.33672 * 122.15370 * 7 5 3 35 35 H 1.08995 * 110.40413 * 142.65694 * 8 7 5 36 36 H 1.09004 * 110.40407 * 264.96940 * 8 7 5 37 37 H 0.97001 * 120.00191 * 0.02562 * 12 10 9 38 38 H 1.08992 * 109.47368 * 300.00704 * 13 12 10 39 39 H 1.08999 * 109.46562 * 60.01012 * 13 12 10 40 40 H 0.96992 * 120.00149 * 0.02562 * 16 14 13 41 41 H 0.97003 * 119.99807 * 179.97438 * 20 19 17 42 42 H 1.08993 * 110.40911 * 280.80332 * 25 9 8 43 43 H 1.09005 * 110.40913 * 158.36877 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6460 1.1671 0.0006 6 6 4.1764 0.4347 1.2347 7 6 4.1823 2.6132 -0.0368 8 6 4.9988 2.7018 -1.3441 9 7 4.4344 1.6405 -2.2100 10 6 4.2003 1.6932 -3.5363 11 8 3.7283 0.7300 -4.1090 12 7 4.4893 2.8134 -4.2277 13 6 4.2353 2.8704 -5.6694 14 6 4.6427 4.2215 -6.1982 15 8 5.1007 5.0547 -5.4450 16 7 4.4982 4.5040 -7.5081 17 6 4.8685 5.7334 -7.9891 18 1 5.2763 6.4752 -7.3184 19 6 4.7190 6.0248 -9.3394 20 7 4.2223 5.1223 -10.1553 21 14 5.2241 7.6995 -9.9949 22 1 5.7498 8.5290 -8.8810 23 1 6.2784 7.5297 -11.0267 24 1 4.0449 8.3712 -10.5979 25 6 4.1853 0.5085 -1.2875 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.9500 -0.8401 -0.0004 30 1 3.8523 0.9574 2.1346 31 1 5.2656 0.4091 1.2017 32 1 3.7892 -0.5842 1.2470 33 1 3.3558 3.3236 -0.0574 34 1 4.8237 2.8018 0.8242 35 1 4.8691 3.6797 -1.8077 36 1 6.0540 2.5126 -1.1467 37 1 4.8661 3.5817 -3.7709 38 1 4.8135 2.0947 -6.1712 39 1 3.1735 2.7114 -5.8577 40 1 4.1317 3.8379 -8.1103 41 1 4.1176 5.3260 -11.0980 42 1 5.1131 -0.0252 -1.0816 43 1 3.4418 -0.1683 -1.7084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346659164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:57 Heat of formation + Delta-G solvation = -95.908773 kcal Electronic energy + Delta-G solvation = -26130.767467 eV Core-core repulsion = 22211.181186 eV Total energy + Delta-G solvation = -3919.586281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.96754 -39.55639 -38.26382 -37.28039 -34.94338 -34.41490 -33.70023 -33.04378 -31.34688 -29.85729 -28.09406 -27.20673 -26.18526 -24.55793 -23.69560 -22.16006 -19.87671 -19.83628 -19.58240 -18.41577 -17.93239 -17.16498 -16.31707 -16.07526 -15.93824 -15.40951 -15.30249 -14.86298 -14.70842 -14.35828 -14.24919 -13.94839 -13.60950 -13.50646 -13.28745 -13.10153 -12.74609 -12.64266 -12.49678 -12.42168 -12.09861 -11.90616 -11.66057 -11.61236 -11.37215 -11.12551 -10.94307 -10.39107 -10.30715 -10.07711 -9.99121 -9.62567 -9.41397 -8.97876 -8.60288 -8.49946 -8.07678 -6.49293 -3.91150 2.38677 2.60054 2.89827 3.11959 3.23994 3.30919 3.36115 3.77298 3.96235 4.09929 4.22169 4.32005 4.40371 4.66285 4.90413 4.93412 4.96749 5.04643 5.12617 5.19479 5.23199 5.27579 5.41374 5.43556 5.54295 5.56177 5.59841 5.66674 5.90809 5.96007 6.02784 6.07758 6.12711 6.18147 6.76810 7.16118 7.16837 7.48442 7.94966 7.95877 8.17063 8.47588 8.77666 9.07010 9.41895 9.89803 10.67767 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.002557 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.063738 B =10945.702830 C =11179.148886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.734 5.734 3 C 0.528 3.472 4 O -0.530 6.530 5 C -0.100 4.100 6 C -0.133 4.133 7 C -0.123 4.123 8 C 0.101 3.899 9 N -0.642 5.642 10 C 0.730 3.270 11 O -0.596 6.596 12 N -0.721 5.721 13 C 0.128 3.872 14 C 0.430 3.570 15 O -0.597 6.597 16 N -0.550 5.550 17 C -0.303 4.303 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.895 5.895 21 Si 0.932 3.068 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.139 3.861 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.401 0.599 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.407 0.593 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.273 0.727 42 H 0.082 0.918 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.326 -13.099 22.006 25.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.386 5.386 3 C 0.314 3.686 4 O -0.405 6.405 5 C -0.105 4.105 6 C -0.191 4.191 7 C -0.161 4.161 8 C -0.023 4.023 9 N -0.381 5.381 10 C 0.432 3.568 11 O -0.475 6.475 12 N -0.378 5.378 13 C 0.000 4.000 14 C 0.215 3.785 15 O -0.484 6.484 16 N -0.185 5.185 17 C -0.433 4.433 18 H 0.124 0.876 19 C -0.178 4.178 20 N -0.535 5.535 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 C 0.015 3.985 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.235 0.765 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.245 0.755 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.230 0.770 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.894 -12.433 21.675 25.060 hybrid contribution 0.315 0.307 -0.632 0.770 sum -1.579 -12.126 21.043 24.338 Atomic orbital electron populations 1.21545 0.79418 1.02261 1.02442 1.45733 1.07856 1.08662 1.76330 1.20301 0.89590 0.83610 0.75134 1.90697 1.69902 1.31273 1.48661 1.21781 0.92091 0.99059 0.97533 1.21829 1.02054 0.99770 0.95462 1.22669 1.01049 0.94759 0.97650 1.22390 0.97327 0.92356 0.90212 1.47870 1.68105 1.16646 1.05480 1.15224 0.78739 0.83423 0.79394 1.90901 1.51941 1.36663 1.67952 1.44758 1.68417 1.15760 1.08865 1.20805 1.01910 0.97409 0.79880 1.19743 0.86039 0.88909 0.83769 1.90490 1.51407 1.49556 1.56914 1.41789 1.54760 1.15524 1.06379 1.19779 1.39366 0.91299 0.92843 0.87632 1.25326 0.96892 0.99693 0.95868 1.69627 1.44244 1.34490 1.05167 0.85757 0.78210 0.81257 0.78858 1.19135 1.20626 1.20624 1.22141 1.01073 0.89072 0.86263 0.90601 0.92236 0.92079 0.76494 0.91470 0.90683 0.91921 0.88389 0.89556 0.89871 0.90765 0.75487 0.89935 0.90014 0.77019 0.91663 0.90039 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 10.70 59.84 0.64 1.31 16 2 N -0.73 -6.06 5.33 -67.08 -0.36 -6.42 16 3 C 0.53 5.95 6.47 -10.99 -0.07 5.88 16 4 O -0.53 -8.28 15.26 5.55 0.08 -8.19 16 5 C -0.10 -0.86 0.86 -154.26 -0.13 -1.00 16 6 C -0.13 -0.66 8.17 37.16 0.30 -0.36 16 7 C -0.12 -1.15 6.24 -25.33 -0.16 -1.31 16 8 C 0.10 1.07 6.91 -2.41 -0.02 1.05 16 9 N -0.64 -8.71 3.32 -175.02 -0.58 -9.29 16 10 C 0.73 12.96 8.57 -86.91 -0.74 12.22 16 11 O -0.60 -12.25 16.61 5.29 0.09 -12.16 16 12 N -0.72 -13.17 5.50 -66.41 -0.37 -13.53 16 13 C 0.13 2.51 6.15 -5.19 -0.03 2.48 16 14 C 0.43 10.16 7.85 -10.99 -0.09 10.07 16 15 O -0.60 -15.64 15.24 5.55 0.08 -15.56 16 16 N -0.55 -13.92 5.29 -10.96 -0.06 -13.98 16 17 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 18 H 0.11 3.03 7.16 -52.49 -0.38 2.66 16 19 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 20 N -0.89 -24.21 13.05 55.50 0.72 -23.48 16 21 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 25 C 0.14 1.39 6.12 -2.41 -0.01 1.38 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.40 2.10 8.14 -40.82 -0.33 1.77 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.29 8.10 -51.93 -0.42 -0.14 16 32 H 0.06 0.21 7.54 -51.93 -0.39 -0.18 16 33 H 0.10 1.19 6.46 -51.93 -0.34 0.85 16 34 H 0.09 0.57 7.71 -51.93 -0.40 0.17 16 35 H 0.08 0.97 6.87 -51.93 -0.36 0.61 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.41 7.31 5.84 -40.82 -0.24 7.08 16 38 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 39 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.40 9.65 7.90 -40.82 -0.32 9.32 16 41 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.08 0.63 7.83 -51.93 -0.41 0.22 16 43 H 0.08 0.93 7.29 -51.93 -0.38 0.55 16 LS Contribution 359.84 15.07 5.42 5.42 Total: -1.00 -36.06 359.84 -6.59 -42.65 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -6.05 Total: 15.00 kcal Atomic # 6 Polarization: 24.34 SS G_CDS: -0.55 Total: 23.78 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -0.64 Total: -66.71 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: 0.26 Total: -35.91 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.06 -6.59 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346659164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.263 kcal (2) G-P(sol) polarization free energy of solvation -36.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds