Wall clock time and date at job start Fri Apr 10 2020 18:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34770 * 120.00617 * 2 1 4 4 O 1.21287 * 119.99447 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00695 * 179.97438 * 3 2 1 6 6 C 1.52997 * 110.30430 * 300.70428 * 5 3 2 7 7 C 1.54285 * 110.34376 * 178.52282 * 5 3 2 8 8 C 1.54390 * 104.96231 * 241.02697 * 7 5 3 9 9 N 1.48142 * 104.61475 * 23.86591 * 8 7 5 10 10 C 1.34785 * 127.83203 * 140.39596 * 9 8 7 11 11 O 1.21591 * 119.99648 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00066 * 0.02562 * 10 9 8 13 13 C 1.46504 * 119.99897 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.46895 * 180.02562 * 13 12 10 15 15 O 1.21294 * 120.00650 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99748 * 180.02562 * 14 13 12 17 17 C 1.37104 * 119.99921 * 179.97438 * 16 14 13 18 18 H 1.07997 * 119.99716 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99744 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00244 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99856 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46933 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47053 * 119.99831 * 21 19 17 24 24 H 1.48503 * 109.47154 * 240.00105 * 21 19 17 25 25 C 1.48139 * 104.32965 * 320.41517 * 9 8 7 26 26 H 1.08999 * 109.47382 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47023 * 300.00063 * 1 2 3 28 28 H 1.08995 * 109.46961 * 60.00247 * 1 2 3 29 29 H 0.97011 * 119.99897 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47153 * 297.82008 * 6 5 3 31 31 H 1.09001 * 109.46832 * 177.82199 * 6 5 3 32 32 H 1.09004 * 109.47261 * 57.82180 * 6 5 3 33 33 H 1.09002 * 110.34506 * 359.90092 * 7 5 3 34 34 H 1.09005 * 110.33672 * 122.15370 * 7 5 3 35 35 H 1.08995 * 110.40413 * 142.65694 * 8 7 5 36 36 H 1.09004 * 110.40407 * 264.96940 * 8 7 5 37 37 H 0.97001 * 120.00191 * 0.02562 * 12 10 9 38 38 H 1.08992 * 109.47368 * 300.00704 * 13 12 10 39 39 H 1.08999 * 109.46562 * 60.01012 * 13 12 10 40 40 H 0.96992 * 120.00149 * 0.02562 * 16 14 13 41 41 H 0.97003 * 119.99807 * 179.97438 * 20 19 17 42 42 H 1.08993 * 110.40911 * 280.80332 * 25 9 8 43 43 H 1.09005 * 110.40913 * 158.36877 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6460 1.1671 0.0006 6 6 4.1764 0.4347 1.2347 7 6 4.1823 2.6132 -0.0368 8 6 4.9988 2.7018 -1.3441 9 7 4.4344 1.6405 -2.2100 10 6 4.2003 1.6932 -3.5363 11 8 3.7283 0.7300 -4.1090 12 7 4.4893 2.8134 -4.2277 13 6 4.2353 2.8704 -5.6694 14 6 4.6427 4.2215 -6.1982 15 8 5.1007 5.0547 -5.4450 16 7 4.4982 4.5040 -7.5081 17 6 4.8685 5.7334 -7.9891 18 1 5.2763 6.4752 -7.3184 19 6 4.7190 6.0248 -9.3394 20 7 4.2223 5.1223 -10.1553 21 14 5.2241 7.6995 -9.9949 22 1 5.7498 8.5290 -8.8810 23 1 6.2784 7.5297 -11.0267 24 1 4.0449 8.3712 -10.5979 25 6 4.1853 0.5085 -1.2875 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.9500 -0.8401 -0.0004 30 1 3.8523 0.9574 2.1346 31 1 5.2656 0.4091 1.2017 32 1 3.7892 -0.5842 1.2470 33 1 3.3558 3.3236 -0.0574 34 1 4.8237 2.8018 0.8242 35 1 4.8691 3.6797 -1.8077 36 1 6.0540 2.5126 -1.1467 37 1 4.8661 3.5817 -3.7709 38 1 4.8135 2.0947 -6.1712 39 1 3.1735 2.7114 -5.8577 40 1 4.1317 3.8379 -8.1103 41 1 4.1176 5.3260 -11.0980 42 1 5.1131 -0.0252 -1.0816 43 1 3.4418 -0.1683 -1.7084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346659164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:56 Heat of formation + Delta-G solvation = -125.481325 kcal Electronic energy + Delta-G solvation = -26132.049829 eV Core-core repulsion = 22211.181186 eV Total energy + Delta-G solvation = -3920.868643 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.90654 -40.87510 -40.00338 -38.36304 -36.27346 -35.77665 -35.34958 -33.99108 -33.37213 -30.69217 -29.55125 -27.86019 -27.32635 -26.14094 -24.77098 -22.98225 -21.43904 -21.17172 -20.60133 -20.14240 -19.41679 -18.08720 -17.56972 -17.30730 -17.06912 -16.89174 -16.54409 -16.44438 -15.95375 -15.93642 -15.41536 -15.21004 -15.00567 -14.64890 -14.07119 -14.00630 -13.86301 -13.58647 -13.56252 -13.44897 -13.30970 -13.14922 -13.07685 -12.92374 -12.46199 -12.41579 -12.11952 -12.05073 -11.67626 -11.59682 -11.44007 -10.91175 -10.59022 -10.38528 -10.19371 -10.11511 -9.64918 -8.52501 -6.02893 1.34021 1.37428 1.43489 1.54660 1.57347 1.86386 2.01594 2.22306 2.26939 2.82488 3.13075 3.14493 3.34433 3.52110 3.74339 4.01776 4.17206 4.25175 4.32979 4.36833 4.40440 4.41401 4.47592 4.56211 4.64696 4.72045 4.83479 4.87829 4.93251 5.00058 5.16711 5.21829 5.25413 5.37032 5.37553 5.42323 5.90338 5.93633 6.45905 6.48073 6.83518 7.01692 7.19720 7.36982 7.44903 7.91894 8.64770 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.002557 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.063738 B =10945.702830 C =11179.148886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.722 5.722 3 C 0.516 3.484 4 O -0.584 6.584 5 C -0.090 4.090 6 C -0.128 4.128 7 C -0.119 4.119 8 C 0.096 3.904 9 N -0.645 5.645 10 C 0.725 3.275 11 O -0.629 6.629 12 N -0.724 5.724 13 C 0.142 3.858 14 C 0.434 3.566 15 O -0.624 6.624 16 N -0.558 5.558 17 C -0.337 4.337 18 H 0.086 0.914 19 C -0.011 4.011 20 N -0.916 5.916 21 Si 0.998 3.002 22 H -0.270 1.270 23 H -0.269 1.269 24 H -0.271 1.271 25 C 0.134 3.866 26 H 0.113 0.887 27 H 0.055 0.945 28 H 0.035 0.965 29 H 0.418 0.582 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.121 0.879 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.408 0.592 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.399 0.601 41 H 0.280 0.720 42 H 0.117 0.883 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 -14.367 23.347 27.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.374 5.374 3 C 0.303 3.697 4 O -0.464 6.464 5 C -0.095 4.095 6 C -0.185 4.185 7 C -0.158 4.158 8 C -0.026 4.026 9 N -0.382 5.382 10 C 0.427 3.573 11 O -0.511 6.511 12 N -0.382 5.382 13 C 0.013 3.987 14 C 0.221 3.779 15 O -0.512 6.512 16 N -0.193 5.193 17 C -0.466 4.466 18 H 0.104 0.896 19 C -0.212 4.212 20 N -0.556 5.556 21 Si 0.821 3.179 22 H -0.194 1.194 23 H -0.194 1.194 24 H -0.197 1.197 25 C 0.011 3.989 26 H 0.131 0.869 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.255 0.745 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.139 0.861 35 H 0.084 0.916 36 H 0.124 0.876 37 H 0.246 0.754 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.233 0.767 41 H 0.090 0.910 42 H 0.135 0.865 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.738 -13.769 23.067 26.874 hybrid contribution -0.086 0.646 -0.975 1.172 sum -0.824 -13.123 22.092 25.709 Atomic orbital electron populations 1.21641 0.79131 1.04247 1.01006 1.45718 1.08260 1.08746 1.74645 1.20935 0.90971 0.83496 0.74324 1.90678 1.71174 1.33232 1.51347 1.21791 0.90102 0.98896 0.98663 1.21872 1.03380 1.00195 0.93091 1.22656 1.00329 0.94624 0.98159 1.22642 0.99128 0.90860 0.89955 1.47986 1.67027 1.18683 1.04493 1.15351 0.78632 0.82620 0.80735 1.90865 1.53510 1.37547 1.69204 1.44714 1.68909 1.16257 1.08302 1.20603 1.02258 0.94884 0.80939 1.20353 0.84568 0.89955 0.83062 1.90465 1.52298 1.50954 1.57473 1.41829 1.55267 1.15195 1.07050 1.19778 1.41282 0.92080 0.93443 0.89590 1.26152 0.96254 1.03241 0.95509 1.69691 1.44244 1.36020 1.05659 0.84796 0.78241 0.76746 0.78093 1.19433 1.19443 1.19654 1.22491 1.02578 0.88087 0.85716 0.86873 0.92590 0.94661 0.74511 0.91321 0.88439 0.89981 0.91699 0.86121 0.91591 0.87557 0.75403 0.88640 0.89477 0.76677 0.91022 0.86487 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.70 127.77 1.37 2.60 16 2 N -0.72 -11.06 5.33 -484.54 -2.58 -13.64 16 3 C 0.52 11.39 6.47 87.66 0.57 11.95 16 4 O -0.58 -18.97 15.26 -3.05 -0.05 -19.02 16 5 C -0.09 -1.37 0.86 -52.02 -0.04 -1.41 16 6 C -0.13 -0.76 8.17 71.98 0.59 -0.17 16 7 C -0.12 -2.06 6.24 31.50 0.20 -1.86 16 8 C 0.10 1.92 6.91 86.54 0.60 2.52 16 9 N -0.64 -16.82 3.32 -825.90 -2.74 -19.56 16 10 C 0.72 25.65 8.57 179.05 1.53 27.19 16 11 O -0.63 -25.90 16.61 -4.00 -0.07 -25.97 16 12 N -0.72 -26.71 5.50 -482.30 -2.65 -29.37 16 13 C 0.14 5.60 6.15 85.63 0.53 6.13 16 14 C 0.43 20.91 7.85 87.66 0.69 21.60 16 15 O -0.62 -33.44 15.24 -3.07 -0.05 -33.49 16 16 N -0.56 -28.87 5.29 -306.98 -1.62 -30.49 16 17 C -0.34 -18.92 9.68 84.04 0.81 -18.11 16 18 H 0.09 5.09 7.16 -2.91 -0.02 5.07 16 19 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 20 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16 21 Si 1.00 42.38 29.55 68.60 2.03 44.41 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 25 C 0.13 2.38 6.12 86.54 0.53 2.91 16 26 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.03 0.70 8.14 -2.39 -0.02 0.69 16 29 H 0.42 3.39 8.14 -92.70 -0.75 2.64 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.10 0.22 8.10 -2.39 -0.02 0.20 16 32 H 0.08 0.20 7.54 -2.38 -0.02 0.18 16 33 H 0.06 1.61 6.46 -2.39 -0.02 1.59 16 34 H 0.12 1.23 7.71 -2.38 -0.02 1.21 16 35 H 0.07 1.54 6.87 -2.39 -0.02 1.52 16 36 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.41 14.91 5.84 -92.71 -0.54 14.37 16 38 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 39 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 40 H 0.40 19.83 7.90 -92.71 -0.73 19.10 16 41 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 42 H 0.12 1.31 7.83 -2.39 -0.02 1.29 16 43 H 0.07 1.49 7.29 -2.38 -0.02 1.48 16 Total: -1.00 -80.79 359.84 -0.58 -81.37 By element: Atomic # 1 Polarization: 42.60 SS G_CDS: -0.96 Total: 41.65 kcal Atomic # 6 Polarization: 45.40 SS G_CDS: 7.83 Total: 53.24 kcal Atomic # 7 Polarization: -132.86 SS G_CDS: -9.32 Total: -142.18 kcal Atomic # 8 Polarization: -78.32 SS G_CDS: -0.16 Total: -78.48 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -80.79 -0.58 -81.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346659164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.116 kcal (2) G-P(sol) polarization free energy of solvation -80.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds