Wall clock time and date at job start Fri Apr 10 2020 18:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.53555 * 2 1 4 4 N 1.47319 * 110.59511 * 237.00840 * 2 1 3 5 5 C 1.34526 * 106.61422 * 241.24913 * 4 2 1 6 6 O 1.21543 * 123.76717 * 180.20845 * 5 4 2 7 7 N 1.33787 * 112.46277 * 0.38417 * 5 4 2 8 8 C 1.46500 * 124.18130 * 179.86018 * 7 5 4 9 9 C 1.52997 * 109.47473 * 269.70212 * 8 7 5 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 8 12 12 C 1.34779 * 119.99872 * 179.97438 * 11 10 9 13 13 O 1.21585 * 120.00319 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99768 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99649 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47204 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99758 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00540 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99629 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00380 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47092 * 60.00327 * 20 18 16 22 22 H 1.48499 * 109.47365 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47167 * 300.00357 * 20 18 16 24 24 C 1.34762 * 111.64272 * 359.59632 * 7 5 4 25 25 O 1.21233 * 127.16150 * 180.19654 * 24 7 5 26 26 H 1.08998 * 109.46741 * 297.16517 * 1 2 3 27 27 H 1.08992 * 109.47162 * 57.16594 * 1 2 3 28 28 H 1.09002 * 109.47073 * 177.16583 * 1 2 3 29 29 H 1.09003 * 109.46873 * 182.82764 * 3 2 1 30 30 H 1.08993 * 109.47143 * 302.83123 * 3 2 1 31 31 H 1.09003 * 109.46777 * 62.83521 * 3 2 1 32 32 H 0.96989 * 126.69291 * 61.43905 * 4 2 1 33 33 H 1.09002 * 109.47129 * 149.69955 * 8 7 5 34 34 H 1.08998 * 109.46845 * 29.70762 * 8 7 5 35 35 H 1.09002 * 109.47153 * 59.99757 * 9 8 7 36 36 H 1.09001 * 109.46832 * 299.99948 * 9 8 7 37 37 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 38 38 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 39 39 H 0.97005 * 120.00448 * 359.97438 * 11 10 9 40 40 H 0.96992 * 119.99896 * 359.97438 * 14 12 11 41 41 H 1.09002 * 109.47639 * 300.00344 * 15 14 12 42 42 H 1.09000 * 109.46939 * 60.00340 * 15 14 12 43 43 H 0.97003 * 120.00165 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 7 2.0482 -0.7509 -1.1567 5 6 2.7640 -1.7761 -0.6603 6 8 3.3369 -2.5966 -1.3502 7 7 2.7715 -1.7940 0.6774 8 6 3.4687 -2.7994 1.4832 9 6 2.5253 -3.9703 1.7658 10 6 3.2533 -5.0200 2.6079 11 7 2.3501 -6.1414 2.8779 12 6 2.7782 -7.1910 3.6070 13 8 3.9142 -7.2074 4.0402 14 7 1.9471 -8.2225 3.8558 15 6 2.4127 -9.3636 4.6479 16 6 1.2999 -10.3712 4.7794 17 1 0.3417 -10.1808 4.3187 18 6 1.5048 -11.5361 5.4879 19 7 2.6713 -11.7677 6.0493 20 14 0.1256 -12.7854 5.6504 21 1 -0.2802 -13.2532 4.3006 22 1 0.5974 -13.9421 6.4533 23 1 -1.0368 -12.1545 6.3257 24 6 2.0634 -0.7694 1.1921 25 8 1.8886 -0.5161 2.3648 26 1 -0.3633 0.4692 0.9143 27 1 -0.3633 0.5572 -0.8634 28 1 -0.3633 -1.0264 -0.0508 29 1 3.1554 1.4129 -0.0507 30 1 1.6724 1.9684 -0.8635 31 1 1.7548 1.9375 0.9144 32 1 1.9040 -0.5446 -2.0933 33 1 3.7865 -2.3532 2.4256 34 1 4.3419 -3.1594 0.9391 35 1 2.2075 -4.4165 0.8234 36 1 1.6522 -3.6102 2.3099 37 1 4.1266 -5.3802 2.0641 38 1 3.5706 -4.5736 3.5501 39 1 1.4439 -6.1286 2.5319 40 1 1.0408 -8.2092 3.5105 41 1 3.2657 -9.8265 4.1517 42 1 2.7108 -9.0207 5.6386 43 1 2.8154 -12.5871 6.5481 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347444827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:05 Heat of formation + Delta-G solvation = -83.551634 kcal Electronic energy + Delta-G solvation = -25292.715079 eV Core-core repulsion = 21373.664644 eV Total energy + Delta-G solvation = -3919.050435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.98292 -39.17486 -39.03877 -37.25717 -36.42137 -34.90136 -33.98479 -32.47613 -32.09139 -31.15773 -28.19537 -27.51544 -26.15521 -24.52886 -22.98461 -22.13238 -21.73032 -20.80436 -20.06135 -18.41094 -18.02524 -17.14062 -16.80063 -16.27050 -16.16035 -15.90398 -15.61083 -15.38051 -14.97540 -14.60417 -14.55427 -14.32746 -14.10567 -13.57664 -13.30116 -13.23477 -12.94417 -12.90735 -12.73186 -12.71540 -12.24112 -11.94090 -11.85621 -11.76663 -11.14518 -11.14250 -10.94366 -10.83171 -10.54312 -10.27119 -10.24770 -10.00278 -9.37751 -9.34566 -8.75076 -8.63983 -7.71605 -6.11721 -4.18265 1.17152 1.74010 2.56747 2.59587 3.28315 3.30903 3.33531 3.36066 3.45358 3.90950 3.99805 4.10886 4.35637 4.46692 4.69736 4.72404 4.82864 4.84453 4.87741 4.97736 5.05266 5.08616 5.20501 5.24052 5.28882 5.34720 5.40200 5.41906 5.59732 5.93718 6.00486 6.29150 6.60708 6.87329 6.93118 7.15673 7.55672 7.58932 7.61605 7.69309 7.94699 8.08261 8.80153 8.98407 9.37266 9.52008 10.98487 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.028351 B = 0.002014 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.396286 B =13900.673016 C =14101.007870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.116 3.884 3 C -0.147 4.147 4 N -0.723 5.723 5 C 0.701 3.299 6 O -0.537 6.537 7 N -0.575 5.575 8 C 0.121 3.879 9 C -0.147 4.147 10 C 0.147 3.853 11 N -0.758 5.758 12 C 0.693 3.307 13 O -0.601 6.601 14 N -0.730 5.730 15 C 0.267 3.733 16 C -0.542 4.542 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.276 1.276 24 C 0.528 3.472 25 O -0.458 6.458 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.439 0.561 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.391 0.609 40 H 0.386 0.614 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.158 29.455 -15.865 33.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.026 3.974 3 C -0.205 4.205 4 N -0.388 5.388 5 C 0.402 3.598 6 O -0.410 6.410 7 N -0.321 5.321 8 C -0.001 4.001 9 C -0.186 4.186 10 C 0.021 3.979 11 N -0.416 5.416 12 C 0.393 3.607 13 O -0.480 6.480 14 N -0.382 5.382 15 C 0.146 3.854 16 C -0.581 4.581 17 H 0.080 0.920 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.732 3.268 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C 0.314 3.686 25 O -0.327 6.327 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.283 0.717 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.224 0.776 40 H 0.218 0.782 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.696 28.867 -14.946 32.716 hybrid contribution -1.638 -0.646 -0.655 1.879 sum -5.334 28.221 -15.601 32.684 Atomic orbital electron populations 1.22014 0.90008 1.04019 1.04550 1.21499 0.97346 0.94273 0.84296 1.22011 1.02128 0.91840 1.04565 1.45707 1.54866 1.29109 1.09087 1.15901 0.79866 0.82287 0.81743 1.91056 1.47931 1.41152 1.60818 1.46426 1.49482 1.28304 1.07871 1.21642 0.95311 0.87242 0.95863 1.22122 0.99441 0.95541 1.01471 1.20853 0.92567 0.85509 0.98963 1.45087 1.16357 1.20663 1.59448 1.16134 0.85201 0.80034 0.79369 1.90871 1.18730 1.80862 1.57513 1.45713 1.14749 1.20448 1.57281 1.18974 0.95391 0.80861 0.90193 1.21194 0.98426 1.03588 1.34851 0.92021 1.24950 0.96012 0.98016 0.95105 1.69973 1.22408 1.26173 1.33724 0.86463 0.81716 0.80429 0.78198 1.20117 1.21092 1.20113 1.20820 0.77363 0.80445 0.89970 1.90827 1.56291 1.69016 1.16543 0.89631 0.90149 0.91212 0.91308 0.90150 0.89628 0.71666 0.88100 0.87853 0.90434 0.90730 0.91487 0.91562 0.77603 0.78194 0.95734 0.95737 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.49 8.98 37.16 0.33 -0.16 16 2 C 0.12 0.56 1.37 -132.09 -0.18 0.38 16 3 C -0.15 -0.44 8.99 37.16 0.33 -0.11 16 4 N -0.72 -3.82 5.91 -52.93 -0.31 -4.14 16 5 C 0.70 6.44 8.62 -88.02 -0.76 5.68 16 6 O -0.54 -6.91 17.48 5.33 0.09 -6.82 16 7 N -0.57 -5.03 2.60 -120.73 -0.31 -5.35 16 8 C 0.12 1.07 5.70 -4.04 -0.02 1.05 16 9 C -0.15 -1.42 5.65 -26.73 -0.15 -1.57 16 10 C 0.15 1.90 5.67 -4.04 -0.02 1.88 16 11 N -0.76 -11.67 5.56 -65.23 -0.36 -12.03 16 12 C 0.69 14.81 8.57 -86.91 -0.74 14.07 16 13 O -0.60 -15.47 16.34 5.29 0.09 -15.39 16 14 N -0.73 -16.13 5.55 -66.41 -0.37 -16.50 16 15 C 0.27 7.33 5.43 -5.20 -0.03 7.30 16 16 C -0.54 -15.05 9.28 -34.44 -0.32 -15.36 16 17 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 20 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 C 0.53 4.34 6.98 -10.56 -0.07 4.26 16 25 O -0.46 -4.94 17.76 5.60 0.10 -4.85 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.44 1.30 8.96 -40.82 -0.37 0.93 16 33 H 0.10 0.82 8.00 -51.93 -0.42 0.41 16 34 H 0.10 0.91 7.85 -51.93 -0.41 0.50 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.39 4.84 8.49 -40.82 -0.35 4.49 16 40 H 0.39 7.27 8.33 -40.82 -0.34 6.93 16 41 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 371.30 15.07 5.60 5.60 Total: -1.00 -37.49 371.30 -7.98 -45.47 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.48 Total: 4.56 kcal Atomic # 6 Polarization: 20.82 SS G_CDS: -1.73 Total: 19.09 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: -0.62 Total: -63.82 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: 0.28 Total: -27.05 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.49 -7.98 -45.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347444827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.079 kcal (2) G-P(sol) polarization free energy of solvation -37.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds