Wall clock time and date at job start Fri Apr 10 2020 18:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.53555 * 2 1 4 4 N 1.47319 * 110.59511 * 237.00840 * 2 1 3 5 5 C 1.34526 * 106.61422 * 241.24913 * 4 2 1 6 6 O 1.21543 * 123.76717 * 180.20845 * 5 4 2 7 7 N 1.33787 * 112.46277 * 0.38417 * 5 4 2 8 8 C 1.46500 * 124.18130 * 179.86018 * 7 5 4 9 9 C 1.52997 * 109.47473 * 269.70212 * 8 7 5 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 8 12 12 C 1.34779 * 119.99872 * 179.97438 * 11 10 9 13 13 O 1.21585 * 120.00319 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99768 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99649 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47204 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99758 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00540 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99629 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00380 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47092 * 60.00327 * 20 18 16 22 22 H 1.48499 * 109.47365 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47167 * 300.00357 * 20 18 16 24 24 C 1.34762 * 111.64272 * 359.59632 * 7 5 4 25 25 O 1.21233 * 127.16150 * 180.19654 * 24 7 5 26 26 H 1.08998 * 109.46741 * 297.16517 * 1 2 3 27 27 H 1.08992 * 109.47162 * 57.16594 * 1 2 3 28 28 H 1.09002 * 109.47073 * 177.16583 * 1 2 3 29 29 H 1.09003 * 109.46873 * 182.82764 * 3 2 1 30 30 H 1.08993 * 109.47143 * 302.83123 * 3 2 1 31 31 H 1.09003 * 109.46777 * 62.83521 * 3 2 1 32 32 H 0.96989 * 126.69291 * 61.43905 * 4 2 1 33 33 H 1.09002 * 109.47129 * 149.69955 * 8 7 5 34 34 H 1.08998 * 109.46845 * 29.70762 * 8 7 5 35 35 H 1.09002 * 109.47153 * 59.99757 * 9 8 7 36 36 H 1.09001 * 109.46832 * 299.99948 * 9 8 7 37 37 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 38 38 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 39 39 H 0.97005 * 120.00448 * 359.97438 * 11 10 9 40 40 H 0.96992 * 119.99896 * 359.97438 * 14 12 11 41 41 H 1.09002 * 109.47639 * 300.00344 * 15 14 12 42 42 H 1.09000 * 109.46939 * 60.00340 * 15 14 12 43 43 H 0.97003 * 120.00165 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 7 2.0482 -0.7509 -1.1567 5 6 2.7640 -1.7761 -0.6603 6 8 3.3369 -2.5966 -1.3502 7 7 2.7715 -1.7940 0.6774 8 6 3.4687 -2.7994 1.4832 9 6 2.5253 -3.9703 1.7658 10 6 3.2533 -5.0200 2.6079 11 7 2.3501 -6.1414 2.8779 12 6 2.7782 -7.1910 3.6070 13 8 3.9142 -7.2074 4.0402 14 7 1.9471 -8.2225 3.8558 15 6 2.4127 -9.3636 4.6479 16 6 1.2999 -10.3712 4.7794 17 1 0.3417 -10.1808 4.3187 18 6 1.5048 -11.5361 5.4879 19 7 2.6713 -11.7677 6.0493 20 14 0.1256 -12.7854 5.6504 21 1 -0.2802 -13.2532 4.3006 22 1 0.5974 -13.9421 6.4533 23 1 -1.0368 -12.1545 6.3257 24 6 2.0634 -0.7694 1.1921 25 8 1.8886 -0.5161 2.3648 26 1 -0.3633 0.4692 0.9143 27 1 -0.3633 0.5572 -0.8634 28 1 -0.3633 -1.0264 -0.0508 29 1 3.1554 1.4129 -0.0507 30 1 1.6724 1.9684 -0.8635 31 1 1.7548 1.9375 0.9144 32 1 1.9040 -0.5446 -2.0933 33 1 3.7865 -2.3532 2.4256 34 1 4.3419 -3.1594 0.9391 35 1 2.2075 -4.4165 0.8234 36 1 1.6522 -3.6102 2.3099 37 1 4.1266 -5.3802 2.0641 38 1 3.5706 -4.5736 3.5501 39 1 1.4439 -6.1286 2.5319 40 1 1.0408 -8.2092 3.5105 41 1 3.2657 -9.8265 4.1517 42 1 2.7108 -9.0207 5.6386 43 1 2.8154 -12.5871 6.5481 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347444827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:05 Heat of formation + Delta-G solvation = -114.499819 kcal Electronic energy + Delta-G solvation = -25294.057093 eV Core-core repulsion = 21373.664644 eV Total energy + Delta-G solvation = -3920.392449 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.61557 -40.88682 -39.77610 -37.92481 -37.35139 -36.25817 -35.77220 -34.37832 -32.98856 -32.01159 -29.34220 -28.43451 -27.35540 -25.25569 -24.63402 -23.34794 -22.46535 -21.88799 -21.32987 -19.78094 -19.04597 -18.11553 -17.74682 -17.59504 -17.27469 -16.84707 -16.76542 -16.66578 -16.26934 -15.79240 -15.48859 -15.32694 -15.13013 -14.97938 -14.49552 -14.20387 -14.02596 -13.70340 -13.63807 -13.46925 -13.25693 -13.11756 -12.91921 -12.82676 -12.67354 -12.55231 -12.22763 -12.06415 -11.89521 -11.49576 -11.34032 -11.18704 -10.97537 -10.79040 -10.52024 -10.29353 -9.59861 -8.27565 -6.44298 0.52055 1.09292 1.43604 1.48411 1.56363 1.80855 1.95481 2.11022 2.23143 2.40342 2.84671 3.06992 3.50266 3.52140 3.76762 3.77614 3.78512 3.97367 4.15983 4.35996 4.43936 4.52668 4.62792 4.65486 4.67684 4.74952 4.83421 4.98997 5.00023 5.11128 5.12604 5.20227 5.27467 5.48015 5.50566 5.67515 5.80226 5.85362 5.97014 6.24779 6.31308 6.67032 7.06495 7.24485 7.30209 7.70953 8.84562 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.028351 B = 0.002014 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.396286 B =13900.673016 C =14101.007870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.124 3.876 3 C -0.145 4.145 4 N -0.701 5.701 5 C 0.698 3.302 6 O -0.579 6.579 7 N -0.577 5.577 8 C 0.118 3.882 9 C -0.127 4.127 10 C 0.145 3.855 11 N -0.733 5.733 12 C 0.691 3.309 13 O -0.648 6.648 14 N -0.724 5.724 15 C 0.285 3.715 16 C -0.556 4.556 17 H 0.084 0.916 18 C 0.002 3.998 19 N -0.930 5.930 20 Si 0.988 3.012 21 H -0.262 1.262 22 H -0.285 1.285 23 H -0.262 1.262 24 C 0.523 3.477 25 O -0.487 6.487 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.452 0.548 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.410 0.590 40 H 0.405 0.595 41 H -0.015 1.015 42 H -0.014 1.014 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.960 30.936 -17.395 36.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.034 3.966 3 C -0.202 4.202 4 N -0.367 5.367 5 C 0.399 3.601 6 O -0.455 6.455 7 N -0.323 5.323 8 C -0.004 4.004 9 C -0.166 4.166 10 C 0.020 3.980 11 N -0.391 5.391 12 C 0.390 3.610 13 O -0.531 6.531 14 N -0.377 5.377 15 C 0.162 3.838 16 C -0.594 4.594 17 H 0.102 0.898 18 C -0.197 4.197 19 N -0.569 5.569 20 Si 0.811 3.189 21 H -0.187 1.187 22 H -0.211 1.211 23 H -0.186 1.186 24 C 0.311 3.689 25 O -0.358 6.358 26 H 0.106 0.894 27 H 0.126 0.874 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.299 0.701 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.247 0.753 40 H 0.240 0.760 41 H 0.003 0.997 42 H 0.004 0.996 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.578 30.447 -16.548 35.273 hybrid contribution -0.719 -0.991 -0.198 1.240 sum -7.297 29.457 -16.746 34.661 Atomic orbital electron populations 1.22056 0.88277 1.04002 1.05975 1.21644 0.98378 0.94513 0.82086 1.22054 1.01747 0.90433 1.06007 1.45656 1.53317 1.27705 1.10001 1.16037 0.79898 0.82591 0.81572 1.91030 1.49904 1.42966 1.61589 1.46465 1.49487 1.28388 1.07932 1.21601 0.95150 0.87281 0.96339 1.21917 0.99287 0.94670 1.00737 1.20999 0.92425 0.85245 0.99338 1.44863 1.17568 1.19312 1.57360 1.16309 0.84358 0.80800 0.79526 1.90838 1.20874 1.81933 1.59465 1.45305 1.15774 1.19596 1.57059 1.18415 0.94665 0.82328 0.88432 1.21573 0.99035 1.03722 1.35093 0.89817 1.26094 0.98867 1.00451 0.94323 1.70143 1.25099 1.27054 1.34580 0.85167 0.78006 0.77040 0.78730 1.18691 1.21059 1.18625 1.21435 0.76707 0.80254 0.90536 1.90811 1.57328 1.69677 1.17956 0.89442 0.87361 0.92120 0.92021 0.87359 0.89397 0.70099 0.87495 0.87985 0.90307 0.90032 0.92226 0.91960 0.75349 0.75986 0.99667 0.99619 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 8.98 71.98 0.65 0.09 16 2 C 0.12 0.91 1.37 2.98 0.00 0.91 16 3 C -0.14 -0.47 8.99 71.98 0.65 0.17 16 4 N -0.70 -5.99 5.91 -439.80 -2.60 -8.59 16 5 C 0.70 12.15 8.62 179.44 1.55 13.69 16 6 O -0.58 -14.74 17.48 -3.85 -0.07 -14.80 16 7 N -0.58 -9.65 2.60 -773.14 -2.01 -11.66 16 8 C 0.12 2.05 5.70 86.38 0.49 2.54 16 9 C -0.13 -2.35 5.65 30.59 0.17 -2.17 16 10 C 0.14 3.71 5.67 86.38 0.49 4.20 16 11 N -0.73 -22.11 5.56 -478.54 -2.66 -24.77 16 12 C 0.69 29.95 8.57 179.05 1.53 31.49 16 13 O -0.65 -34.67 16.34 -3.98 -0.07 -34.73 16 14 N -0.72 -32.32 5.55 -482.29 -2.68 -35.00 16 15 C 0.28 16.24 5.43 85.63 0.46 16.70 16 16 C -0.56 -30.95 9.28 25.60 0.24 -30.71 16 17 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 18 C 0.00 0.13 5.46 84.65 0.46 0.59 16 19 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 20 Si 0.99 42.89 29.54 68.60 2.03 44.92 16 21 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 C 0.52 7.97 6.98 87.94 0.61 8.59 16 25 O -0.49 -10.13 17.76 -2.88 -0.05 -10.18 16 26 H 0.09 0.36 8.14 -2.39 -0.02 0.35 16 27 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.06 0.37 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.45 1.53 8.96 -92.72 -0.83 0.69 16 33 H 0.11 1.72 8.00 -2.39 -0.02 1.70 16 34 H 0.10 1.81 7.85 -2.39 -0.02 1.79 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.41 9.41 8.49 -92.70 -0.79 8.62 16 40 H 0.40 14.84 8.33 -92.71 -0.77 14.07 16 41 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 42 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 43 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -84.45 371.30 -1.85 -86.29 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -1.33 Total: 19.20 kcal Atomic # 6 Polarization: 38.79 SS G_CDS: 7.31 Total: 46.11 kcal Atomic # 7 Polarization: -127.13 SS G_CDS: -9.67 Total: -136.80 kcal Atomic # 8 Polarization: -59.53 SS G_CDS: -0.18 Total: -59.72 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -84.45 -1.85 -86.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347444827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.206 kcal (2) G-P(sol) polarization free energy of solvation -84.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds