Wall clock time and date at job start Fri Apr 10 2020 18:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48500 * 109.46935 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47176 * 300.00016 * 3 2 1 6 6 H 1.48495 * 109.46896 * 59.99956 * 3 2 1 7 7 C 1.37883 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99788 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99945 * 0.02562 * 7 2 1 10 10 O 1.42894 * 110.88632 * 62.42480 * 9 7 2 11 11 C 1.55157 * 111.03524 * 186.32830 * 9 7 2 12 12 C 1.54332 * 103.02144 * 153.39149 * 11 9 7 13 13 N 1.47029 * 107.26419 * 338.14338 * 12 11 9 14 14 C 1.34775 * 125.64476 * 178.84225 * 13 12 11 15 15 O 1.21589 * 119.99889 * 179.68757 * 14 13 12 16 16 N 1.34775 * 120.00068 * 359.69825 * 14 13 12 17 17 C 1.46504 * 119.99531 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.46883 * 179.97438 * 17 16 14 19 19 N 1.46496 * 109.46995 * 180.02562 * 18 17 16 20 20 C 1.47049 * 125.40907 * 90.00529 * 19 18 17 21 21 C 1.54113 * 103.86078 * 179.97438 * 20 19 18 22 22 N 1.47050 * 103.86043 * 359.97438 * 21 20 19 23 23 C 1.33939 * 109.18129 * 359.73461 * 22 21 20 24 24 O 1.21591 * 123.04387 * 180.25977 * 23 22 21 25 25 C 1.47424 * 108.70181 * 358.58552 * 13 12 11 26 26 H 0.97001 * 120.00093 * 359.97438 * 1 2 3 27 27 H 0.96697 * 114.00485 * 297.57276 * 10 9 7 28 28 H 1.09000 * 110.72212 * 271.95521 * 11 9 7 29 29 H 1.09010 * 110.71635 * 35.22804 * 11 9 7 30 30 H 1.08992 * 109.99403 * 218.66550 * 12 11 9 31 31 H 1.09003 * 109.77877 * 97.49555 * 12 11 9 32 32 H 0.96992 * 120.00503 * 359.97438 * 16 14 13 33 33 H 1.09001 * 109.46891 * 60.00097 * 17 16 14 34 34 H 1.08993 * 109.47378 * 299.99469 * 17 16 14 35 35 H 1.09001 * 109.46801 * 300.00349 * 18 17 16 36 36 H 1.09001 * 109.46998 * 59.99945 * 18 17 16 37 37 H 1.09005 * 110.54875 * 298.58713 * 20 19 18 38 38 H 1.08997 * 110.55473 * 61.40318 * 20 19 18 39 39 H 1.09001 * 110.54814 * 118.59235 * 21 20 19 40 40 H 1.09001 * 110.54738 * 241.40222 * 21 20 19 41 41 H 0.97002 * 125.40201 * 180.02562 * 22 21 20 42 42 H 1.09000 * 110.36637 * 143.19904 * 25 13 12 43 43 H 1.09002 * 110.36510 * 265.40535 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.4614 -2.6316 -1.1831 11 6 2.2188 -3.7012 0.1608 12 6 1.3285 -4.7802 0.8126 13 7 0.2053 -4.0864 1.4598 14 6 -0.8081 -4.6797 2.1214 15 8 -1.6843 -4.0032 2.6244 16 7 -0.8501 -6.0227 2.2256 17 6 -1.9514 -6.6674 2.9452 18 6 -1.7610 -8.1853 2.9149 19 7 -2.8625 -8.8300 3.6340 20 6 -4.1332 -9.2638 3.0344 21 6 -4.9132 -9.8675 4.2185 22 7 -3.9988 -9.7102 5.3594 23 6 -2.8693 -9.1247 4.9407 24 8 -1.9364 -8.8786 5.6806 25 6 0.3744 -2.6342 1.2706 26 1 -0.4850 0.8400 0.0004 27 1 -0.2245 -1.9564 -1.2761 28 1 2.5841 -4.0345 -0.8106 29 1 3.0491 -3.4428 0.8183 30 1 1.8997 -5.3351 1.5567 31 1 0.9530 -5.4600 0.0478 32 1 -0.1513 -6.5624 1.8242 33 1 -2.8970 -6.4106 2.4678 34 1 -1.9609 -6.3227 3.9792 35 1 -1.7517 -8.5297 1.8808 36 1 -0.8153 -8.4424 3.3920 37 1 -4.6698 -8.4117 2.6169 38 1 -3.9568 -10.0187 2.2682 39 1 -5.8372 -9.3151 4.3894 40 1 -5.1240 -10.9219 4.0400 41 1 -4.1827 -9.9903 6.2697 42 1 -0.5931 -2.1565 1.1164 43 1 0.8802 -2.1959 2.1309 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414728639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:31 Heat of formation + Delta-G solvation = -81.479733 kcal Electronic energy + Delta-G solvation = -26177.942496 eV Core-core repulsion = 22258.981905 eV Total energy + Delta-G solvation = -3918.960590 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.25872 -39.60226 -37.45709 -36.58065 -35.59791 -34.19952 -33.51714 -32.20305 -30.35883 -29.52844 -28.44528 -27.61423 -25.11606 -23.63446 -23.24463 -22.32199 -20.63073 -19.64325 -19.39651 -17.97171 -17.57127 -17.02903 -16.89588 -16.38535 -15.73825 -15.38418 -15.03534 -14.67506 -14.52298 -14.39149 -14.11828 -14.04893 -13.88086 -13.11885 -13.07240 -12.97828 -12.76491 -12.62286 -12.19254 -11.94689 -11.63601 -11.61568 -11.30620 -11.02996 -10.78802 -10.57076 -10.44707 -10.43926 -10.16330 -9.64118 -9.59445 -9.33967 -8.95171 -8.83103 -8.67373 -8.32696 -7.65802 -6.24916 -4.34503 2.15205 2.88519 3.18297 3.23504 3.30999 3.34311 3.61657 3.78088 3.99274 4.28423 4.44476 4.50387 4.54500 4.80987 4.92256 5.00701 5.02290 5.20786 5.28975 5.39801 5.43462 5.67595 5.76166 5.84821 5.92143 6.03320 6.13576 6.35070 6.53599 6.73086 6.74128 6.78232 6.92108 6.99140 7.18241 7.26474 7.35626 7.66199 7.77325 8.06364 8.31841 8.55830 8.70193 9.15942 9.32683 9.40795 10.82119 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.032431 B = 0.002497 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.162770 B =11212.391863 C =11354.674858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.070 3.930 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.628 5.628 14 C 0.718 3.282 15 O -0.596 6.596 16 N -0.750 5.750 17 C 0.125 3.875 18 C 0.143 3.857 19 N -0.629 5.629 20 C 0.090 3.910 21 C 0.093 3.907 22 N -0.743 5.743 23 C 0.699 3.301 24 O -0.582 6.582 25 C 0.113 3.887 26 H 0.269 0.731 27 H 0.381 0.619 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.393 0.607 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.429 0.571 42 H 0.085 0.915 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.035 -20.776 3.607 22.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.154 4.154 12 C -0.019 4.019 13 N -0.365 5.365 14 C 0.420 3.580 15 O -0.474 6.474 16 N -0.408 5.408 17 C -0.002 4.002 18 C 0.020 3.980 19 N -0.368 5.368 20 C -0.034 4.034 21 C -0.033 4.033 22 N -0.406 5.406 23 C 0.399 3.601 24 O -0.459 6.459 25 C -0.008 4.008 26 H 0.079 0.921 27 H 0.231 0.769 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.227 0.773 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.271 0.729 42 H 0.103 0.897 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.916 -20.483 4.206 22.359 hybrid contribution 0.079 0.963 0.263 1.002 sum -7.837 -19.520 4.469 21.504 Atomic orbital electron populations 1.69732 1.05968 1.27759 1.49546 1.25089 0.95043 0.99769 0.93401 0.86355 0.80041 0.82803 0.77730 1.19602 1.20794 1.20791 1.21491 0.93654 0.90029 1.52330 0.91489 1.19640 0.86658 0.91579 0.81400 1.86093 1.51557 1.57144 1.44338 1.22591 0.97556 0.95186 1.00040 1.21937 0.88318 0.96088 0.95535 1.47928 1.23152 1.09786 1.55605 1.15453 0.81934 0.81172 0.79472 1.90892 1.39734 1.63165 1.53638 1.44890 1.28872 1.05614 1.61398 1.21422 0.90098 0.90983 0.97663 1.21312 0.88800 0.91217 0.96710 1.46930 1.18051 1.63475 1.08355 1.22452 0.84434 1.00236 0.96268 1.22348 0.93972 1.01808 0.85124 1.45090 1.17234 1.66387 1.11871 1.15915 0.83178 0.78473 0.82566 1.90997 1.37472 1.60340 1.57060 1.23137 1.02555 0.75628 0.99516 0.92081 0.76935 0.90776 0.90425 0.93063 0.92666 0.77332 0.91744 0.91423 0.89422 0.89033 0.89608 0.89786 0.89826 0.89968 0.72914 0.89657 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.97 10.69 55.43 0.59 -23.37 16 2 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 3 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.54 -13.97 8.27 -34.44 -0.28 -14.26 16 8 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 9 C 0.25 5.99 0.87 -89.62 -0.08 5.91 16 10 O -0.58 -14.76 13.16 -35.23 -0.46 -15.22 16 11 C -0.12 -2.27 6.13 -24.89 -0.15 -2.43 16 12 C 0.10 1.81 6.15 -3.06 -0.02 1.79 16 13 N -0.63 -13.20 3.33 -176.23 -0.59 -13.79 16 14 C 0.72 14.99 8.49 -86.92 -0.74 14.25 16 15 O -0.60 -14.94 16.60 5.29 0.09 -14.86 16 16 N -0.75 -11.42 5.52 -65.22 -0.36 -11.78 16 17 C 0.12 1.68 6.00 -4.04 -0.02 1.65 16 18 C 0.14 1.38 6.11 -4.04 -0.02 1.36 16 19 N -0.63 -6.02 2.96 -178.81 -0.53 -6.55 16 20 C 0.09 0.48 7.68 -3.16 -0.02 0.46 16 21 C 0.09 0.39 8.06 -3.16 -0.03 0.36 16 22 N -0.74 -5.74 6.37 -64.70 -0.41 -6.15 16 23 C 0.70 8.39 8.60 -88.40 -0.76 7.63 16 24 O -0.58 -9.75 17.53 5.29 0.09 -9.66 16 25 C 0.11 2.78 5.38 -2.53 -0.01 2.77 16 26 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.38 9.95 7.56 45.56 0.34 10.29 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.08 1.45 8.03 -51.92 -0.42 1.03 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.39 4.81 7.46 -40.82 -0.30 4.50 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.96 7.91 -51.93 -0.41 0.55 16 37 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 41 H 0.43 2.62 8.96 -40.82 -0.37 2.25 16 42 H 0.09 2.36 7.33 -51.93 -0.38 1.98 16 43 H 0.06 1.46 8.03 -51.93 -0.42 1.04 16 LS Contribution 356.86 15.07 5.38 5.38 Total: -1.00 -35.73 356.86 -9.18 -44.91 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -5.72 Total: 14.38 kcal Atomic # 6 Polarization: 23.50 SS G_CDS: -2.24 Total: 21.26 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -1.29 Total: -61.64 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -0.28 Total: -39.74 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.73 -9.18 -44.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414728639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.571 kcal (2) G-P(sol) polarization free energy of solvation -35.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds