Wall clock time and date at job start Fri Apr 10 2020 18:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35245 * 126.07037 * 2 1 4 4 C 1.40398 * 107.86766 * 180.14028 * 3 2 1 5 5 N 1.40195 * 125.97172 * 179.82779 * 4 3 2 6 6 C 1.34777 * 120.00050 * 359.71438 * 5 4 3 7 7 O 1.21588 * 120.00208 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99908 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99635 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47706 * 34.99696 * 9 8 6 11 11 C 1.53005 * 109.47118 * 274.99773 * 9 8 6 12 12 O 1.42901 * 109.47193 * 295.00191 * 11 9 8 13 13 C 1.53004 * 109.46982 * 155.00372 * 9 8 6 14 14 H 1.09001 * 109.46950 * 184.99981 * 13 9 8 15 15 C 1.52998 * 109.46910 * 304.99527 * 13 9 8 16 16 O 1.42894 * 109.47307 * 64.99548 * 13 9 8 17 17 N 1.31211 * 108.05476 * 359.55865 * 4 3 2 18 18 N 1.34961 * 126.07065 * 179.65235 * 2 1 3 19 19 C 1.46501 * 125.97901 * 0.02562 * 18 2 1 20 20 C 1.50697 * 109.47048 * 270.00096 * 19 18 2 21 21 H 1.08004 * 120.00078 * 359.97438 * 20 19 18 22 22 C 1.37877 * 119.99946 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00012 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00156 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46681 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.46878 * 119.99878 * 24 22 20 27 27 H 1.48501 * 109.47231 * 240.00343 * 24 22 20 28 28 H 1.08999 * 109.47717 * 270.34414 * 1 2 3 29 29 H 1.09003 * 109.47624 * 30.34765 * 1 2 3 30 30 H 1.09003 * 109.47194 * 150.34296 * 1 2 3 31 31 H 1.08004 * 126.06365 * 359.95733 * 3 2 1 32 32 H 0.96999 * 119.99903 * 179.71074 * 5 4 3 33 33 H 0.96995 * 120.00015 * 359.72369 * 8 6 5 34 34 H 1.08995 * 109.46915 * 55.00628 * 11 9 8 35 35 H 1.09007 * 109.47027 * 175.00183 * 11 9 8 36 36 H 0.96701 * 113.99495 * 179.97438 * 12 11 9 37 37 H 1.09006 * 109.46906 * 59.99963 * 15 13 9 38 38 H 1.08997 * 109.47260 * 179.97438 * 15 13 9 39 39 H 1.09000 * 109.47223 * 300.00707 * 15 13 9 40 40 H 0.96702 * 113.99973 * 180.02562 * 16 13 9 41 41 H 1.09000 * 109.46835 * 30.00064 * 19 18 2 42 42 H 1.09000 * 109.46871 * 149.99844 * 19 18 2 43 43 H 0.97002 * 119.99759 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 -0.0033 5 7 4.7737 1.4752 -0.0077 6 6 4.6369 2.8160 -0.0151 7 8 3.5276 3.3139 -0.0183 8 7 5.7297 3.6049 -0.0188 9 6 5.5809 5.0622 -0.0274 10 1 4.7062 5.3417 0.5598 11 6 5.4051 5.5485 -1.4674 12 8 6.5988 5.2860 -2.2079 13 6 6.8294 5.7058 0.5794 14 1 6.6825 6.7833 0.6548 15 6 7.0757 5.1259 1.9736 16 8 7.9577 5.4361 -0.2549 17 7 3.6336 -0.6575 0.0045 18 7 2.3016 -1.0909 0.0066 19 6 1.8501 -2.4845 0.0145 20 6 1.6947 -2.9541 1.4380 21 1 1.9111 -2.2818 2.2551 22 6 1.2764 -4.2421 1.6973 23 7 1.0124 -5.0606 0.7023 24 14 1.0845 -4.8245 3.4618 25 1 1.4418 -3.7207 4.3889 26 1 -0.3234 -5.2335 3.6977 27 1 1.9832 -5.9821 3.7016 28 1 -0.3634 0.0062 1.0276 29 1 -0.3634 0.8868 -0.5192 30 1 -0.3634 -0.8931 -0.5085 31 1 1.9719 2.1211 -0.0007 32 1 5.6586 1.0780 -0.0055 33 1 6.6146 3.2077 -0.0123 34 1 4.5686 5.0236 -1.9285 35 1 5.2060 6.6202 -1.4672 36 1 6.5585 5.5686 -3.1318 37 1 7.2225 4.0484 1.8982 38 1 7.9653 5.5841 2.4057 39 1 6.2150 5.3316 2.6100 40 1 8.7863 5.8146 0.0696 41 1 0.8916 -2.5588 -0.4992 42 1 2.5850 -3.1074 -0.4954 43 1 0.7184 -5.9668 0.8848 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001425479215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:37 Heat of formation + Delta-G solvation = -74.889171 kcal Electronic energy + Delta-G solvation = -26091.165062 eV Core-core repulsion = 22172.490260 eV Total energy + Delta-G solvation = -3918.674802 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.31429 -41.14037 -39.08149 -36.98777 -36.31979 -35.39075 -35.20938 -33.09557 -32.62698 -31.60805 -29.61067 -28.45590 -27.84618 -25.18851 -24.48618 -23.26688 -21.51521 -21.30283 -21.08307 -19.24808 -18.77663 -18.41735 -17.74034 -17.55783 -17.19355 -16.81325 -16.43331 -16.20433 -15.82690 -15.70128 -15.25621 -14.86957 -14.69476 -14.54640 -14.32517 -13.78979 -13.72127 -13.57373 -13.40844 -13.34947 -13.12906 -13.00982 -12.84438 -12.67150 -12.49514 -12.26285 -12.08238 -11.66776 -11.56830 -11.34118 -11.17387 -10.82694 -10.73229 -10.66904 -10.14508 -9.55147 -9.06492 -8.32134 -6.49962 1.02761 1.13352 1.37152 1.38726 1.51681 1.67522 2.09258 2.35757 2.39657 2.97135 3.10193 3.39801 3.48139 3.74749 3.87630 4.15869 4.17828 4.31208 4.44416 4.47272 4.51250 4.62234 4.73128 4.75345 4.82308 4.90428 4.92343 4.99510 5.01456 5.04750 5.16605 5.22906 5.30909 5.53007 5.54786 5.81755 5.87510 5.98521 6.28555 6.62480 6.75782 7.01416 7.07816 7.13609 7.21023 7.43327 8.73805 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.024365 B = 0.002687 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.931994 B =10417.455646 C =10866.297450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.087 3.913 3 C -0.297 4.297 4 C 0.292 3.708 5 N -0.638 5.638 6 C 0.712 3.288 7 O -0.600 6.600 8 N -0.706 5.706 9 C 0.165 3.835 10 H 0.107 0.893 11 C 0.068 3.932 12 O -0.555 6.555 13 C 0.107 3.893 14 H 0.087 0.913 15 C -0.185 4.185 16 O -0.552 6.552 17 N -0.362 5.362 18 N -0.344 5.344 19 C 0.275 3.725 20 C -0.551 4.551 21 H 0.049 0.951 22 C 0.022 3.978 23 N -0.919 5.919 24 Si 0.973 3.027 25 H -0.274 1.274 26 H -0.266 1.266 27 H -0.274 1.274 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.168 0.832 32 H 0.419 0.581 33 H 0.411 0.589 34 H 0.026 0.974 35 H 0.072 0.928 36 H 0.381 0.619 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.385 0.615 41 H 0.053 0.947 42 H 0.023 0.977 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.889 24.302 -1.395 26.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C -0.328 4.328 4 C 0.037 3.963 5 N -0.289 5.289 6 C 0.411 3.589 7 O -0.478 6.478 8 N -0.362 5.362 9 C 0.060 3.940 10 H 0.125 0.875 11 C -0.012 4.012 12 O -0.360 6.360 13 C 0.048 3.952 14 H 0.105 0.895 15 C -0.243 4.243 16 O -0.359 6.359 17 N -0.193 5.193 18 N -0.126 5.126 19 C 0.156 3.844 20 C -0.590 4.590 21 H 0.067 0.933 22 C -0.179 4.179 23 N -0.557 5.557 24 Si 0.796 3.204 25 H -0.199 1.199 26 H -0.191 1.191 27 H -0.200 1.200 28 H 0.102 0.898 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.185 0.815 32 H 0.255 0.745 33 H 0.248 0.752 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.228 0.772 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.233 0.767 41 H 0.070 0.930 42 H 0.041 0.959 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.292 22.893 -1.224 25.130 hybrid contribution 0.478 -0.062 0.473 0.675 sum 10.770 22.831 -0.751 25.255 Atomic orbital electron populations 1.20464 0.85308 1.04184 1.03955 1.21747 0.96658 0.86427 0.99511 1.21396 0.89809 0.99902 1.21645 1.18967 0.88096 0.88912 1.00349 1.41412 1.07001 1.03949 1.76539 1.15814 0.85346 0.80070 0.77655 1.90819 1.24994 1.73810 1.58213 1.44815 1.07004 1.06120 1.78233 1.21319 0.99027 0.77791 0.95838 0.87497 1.22466 0.87160 0.99418 0.92117 1.86685 1.36386 1.86102 1.26827 1.21862 0.85810 0.98663 0.88898 0.89542 1.22506 1.03121 1.01881 0.96796 1.86770 1.18585 1.79785 1.50726 1.77174 1.00091 1.09793 1.32214 1.48758 1.01656 1.07493 1.54709 1.19243 0.94889 0.72449 0.97795 1.21467 1.47357 0.98392 0.91750 0.93275 1.25743 0.93957 0.95877 1.02309 1.70013 1.45197 1.07409 1.33091 0.85291 0.78489 0.78061 0.78518 1.19859 1.19128 1.19988 0.89787 0.87567 0.91295 0.81518 0.74466 0.75241 0.95537 0.91008 0.77164 0.92892 0.90315 0.91855 0.76653 0.92968 0.95857 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.77 10.11 71.23 0.72 -2.05 16 2 C 0.09 3.77 6.92 41.39 0.29 4.06 16 3 C -0.30 -12.57 9.52 22.11 0.21 -12.36 16 4 C 0.29 12.43 8.11 133.31 1.08 13.51 16 5 N -0.64 -20.89 5.46 -321.23 -1.75 -22.64 16 6 C 0.71 21.50 8.50 179.05 1.52 23.02 16 7 O -0.60 -21.60 13.13 -3.99 -0.05 -21.66 16 8 N -0.71 -15.15 4.27 -457.80 -1.95 -17.10 16 9 C 0.17 2.91 2.36 45.00 0.11 3.01 16 10 H 0.11 2.01 7.58 -2.39 -0.02 1.99 16 11 C 0.07 1.17 6.85 71.98 0.49 1.67 16 12 O -0.55 -9.62 11.17 -126.65 -1.41 -11.04 16 13 C 0.11 1.25 3.37 30.59 0.10 1.35 16 14 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 15 C -0.19 -2.06 9.32 71.98 0.67 -1.39 16 16 O -0.55 -6.99 10.62 -126.65 -1.34 -8.34 16 17 N -0.36 -17.62 12.59 -54.44 -0.69 -18.31 16 18 N -0.34 -17.12 3.59 -338.46 -1.22 -18.34 16 19 C 0.28 14.86 5.99 85.63 0.51 15.37 16 20 C -0.55 -31.42 9.39 25.60 0.24 -31.18 16 21 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 22 C 0.02 1.22 5.46 84.65 0.46 1.68 16 23 N -0.92 -52.42 13.29 21.45 0.28 -52.14 16 24 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.07 2.40 7.07 -2.39 -0.02 2.38 16 31 H 0.17 6.83 5.91 -2.91 -0.02 6.81 16 32 H 0.42 11.33 8.84 -92.71 -0.82 10.51 16 33 H 0.41 7.73 7.86 -92.71 -0.73 7.00 16 34 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.38 3.98 9.12 -74.06 -0.68 3.30 16 37 H 0.05 0.74 7.13 -2.38 -0.02 0.72 16 38 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.38 1.94 9.08 -74.06 -0.67 1.27 16 41 H 0.05 2.78 7.04 -2.39 -0.02 2.77 16 42 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -75.46 361.74 -1.51 -76.97 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -1.81 Total: 30.35 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 6.41 Total: 16.68 kcal Atomic # 7 Polarization: -123.20 SS G_CDS: -5.32 Total: -128.53 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -2.81 Total: -41.03 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -75.46 -1.51 -76.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425479215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.077 kcal (2) G-P(sol) polarization free energy of solvation -75.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds