Wall clock time and date at job start Fri Apr 10 2020 18:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.57685 * 2 1 4 4 C 1.34787 * 119.99622 * 300.15990 * 3 2 1 5 5 O 1.21342 * 119.99833 * 359.97438 * 4 3 2 6 6 C 1.49449 * 119.99380 * 180.02562 * 4 3 2 7 7 N 1.34787 * 119.99380 * 180.02562 * 6 4 3 8 8 O 1.21342 * 120.00786 * 359.97438 * 6 4 3 9 9 C 1.53118 * 109.52555 * 120.16024 * 2 1 3 10 10 C 1.53036 * 109.28068 * 177.55507 * 9 2 1 11 11 N 1.46843 * 109.52229 * 300.82162 * 10 9 2 12 12 C 1.46902 * 110.99818 * 185.83572 * 11 10 9 13 13 C 1.50702 * 109.47027 * 169.99758 * 12 11 10 14 14 O 1.21293 * 120.00255 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99928 * 179.72353 * 13 12 11 16 16 C 1.37101 * 120.00327 * 180.27606 * 15 13 12 17 17 H 1.08001 * 119.99426 * 0.02562 * 16 15 13 18 18 C 1.38942 * 120.00412 * 180.02562 * 16 15 13 19 19 N 1.31414 * 120.00005 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00057 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47191 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46534 * 120.00189 * 20 18 16 23 23 H 1.48498 * 109.47283 * 240.00132 * 20 18 16 24 24 C 1.46843 * 111.20082 * 61.74351 * 11 10 9 25 25 C 1.53038 * 109.52070 * 298.25410 * 24 11 10 26 26 H 1.09004 * 109.46761 * 299.84173 * 1 2 3 27 27 H 1.08996 * 109.47405 * 59.83910 * 1 2 3 28 28 H 1.08998 * 109.47484 * 179.84685 * 1 2 3 29 29 H 0.97000 * 120.00595 * 120.16567 * 3 2 1 30 30 H 0.96990 * 119.99855 * 0.02562 * 7 6 4 31 31 H 0.96996 * 119.99424 * 179.97438 * 7 6 4 32 32 H 1.08995 * 109.50555 * 57.61389 * 9 2 1 33 33 H 1.08997 * 109.53676 * 297.51807 * 9 2 1 34 34 H 1.08996 * 109.46465 * 180.80442 * 10 9 2 35 35 H 1.09001 * 109.45935 * 60.83442 * 10 9 2 36 36 H 1.09004 * 109.47131 * 50.00001 * 12 11 10 37 37 H 1.09000 * 109.47732 * 290.00112 * 12 11 10 38 38 H 0.97000 * 120.00317 * 0.28382 * 15 13 12 39 39 H 0.96996 * 120.00330 * 179.97438 * 19 18 16 40 40 H 1.08997 * 109.46379 * 58.26863 * 24 11 10 41 41 H 1.09000 * 109.46577 * 178.24622 * 24 11 10 42 42 H 1.09001 * 109.50668 * 299.24264 * 25 24 11 43 43 H 1.09001 * 109.53577 * 179.13941 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0208 1.3803 0.0000 4 6 1.6940 2.2117 -1.0093 5 8 0.9937 1.8167 -1.9181 6 6 2.1953 3.6196 -1.0095 7 7 1.8681 4.4512 -2.0186 8 8 2.8960 4.0145 -0.1010 9 6 2.0417 -0.7251 1.2478 10 6 3.5708 -0.7753 1.2115 11 7 4.0101 -1.4790 -0.0001 12 6 5.4670 -1.6679 -0.0002 13 6 5.8528 -2.5980 -1.1214 14 8 4.9984 -3.0579 -1.8492 15 7 7.1480 -2.9140 -1.3193 16 6 7.4997 -3.7556 -2.3428 17 1 6.7388 -4.1651 -2.9908 18 6 8.8348 -4.0818 -2.5465 19 7 9.7606 -3.5840 -1.7578 20 14 9.3138 -5.2292 -3.9407 21 1 8.0946 -5.6497 -4.6768 22 1 10.2332 -4.5231 -4.8689 23 1 9.9946 -6.4262 -3.3849 24 6 3.5708 -0.7753 -1.2117 25 6 2.0416 -0.7251 -1.2479 26 1 -0.3633 0.5114 0.8915 27 1 -0.3634 0.5163 -0.8885 28 1 -0.3634 -1.0276 -0.0027 29 1 2.5811 1.6959 0.7262 30 1 1.3071 4.1359 -2.7442 31 1 2.1931 5.3651 -2.0186 32 1 1.6447 -1.7399 1.2675 33 1 1.7162 -0.1897 2.1396 34 1 3.9378 -1.3035 2.0915 35 1 3.9675 0.2400 1.2058 36 1 5.7776 -2.0981 0.9519 37 1 5.9582 -0.7052 -0.1414 38 1 7.8314 -2.5460 -0.7375 39 1 10.6926 -3.8119 -1.8997 40 1 3.9674 0.2400 -1.2061 41 1 3.9376 -1.3035 -2.0918 42 1 1.6445 -1.7400 -1.2674 43 1 1.7155 -0.1894 -2.1394 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483972229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:42 Heat of formation + Delta-G solvation = -99.926814 kcal Electronic energy + Delta-G solvation = -26845.922045 eV Core-core repulsion = 22926.161529 eV Total energy + Delta-G solvation = -3919.760516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17087 -39.57165 -38.47216 -37.57644 -35.32580 -34.01449 -33.76218 -32.11567 -31.22020 -30.78840 -29.06555 -26.17729 -25.42434 -24.07070 -23.20455 -21.81558 -20.78799 -19.30389 -19.12094 -18.97804 -17.83658 -17.27799 -16.30303 -16.13451 -15.92952 -15.66297 -15.18986 -14.82363 -14.61758 -14.34508 -14.23502 -13.88978 -13.77869 -13.60677 -13.58062 -12.80560 -12.60437 -12.17216 -12.14424 -11.98746 -11.82003 -11.60181 -11.47827 -11.23951 -11.04531 -10.97599 -10.52619 -10.41313 -10.32109 -10.21461 -10.20535 -9.64739 -9.47677 -9.30578 -8.39297 -7.95386 -7.80984 -6.39951 -3.80602 1.19702 2.28108 3.00461 3.17503 3.27952 3.35246 3.61574 3.92650 4.00764 4.25782 4.30988 4.56543 4.73460 4.85760 5.05131 5.23426 5.28243 5.37278 5.45251 5.54313 5.62321 5.63480 5.78185 5.81688 5.86266 5.90390 6.02060 6.04333 6.11856 6.17976 6.30084 6.32837 6.43731 6.56351 6.64357 7.13039 7.32090 7.45391 7.56519 7.57242 7.79887 8.08828 8.63984 9.20287 9.56828 10.08675 10.77948 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.018701 B = 0.003101 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.853318 B = 9027.240307 C = 9504.608845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.170 3.830 3 N -0.687 5.687 4 C 0.507 3.493 5 O -0.514 6.514 6 C 0.512 3.488 7 N -0.823 5.823 8 O -0.524 6.524 9 C -0.116 4.116 10 C 0.051 3.949 11 N -0.512 5.512 12 C 0.046 3.954 13 C 0.444 3.556 14 O -0.576 6.576 15 N -0.565 5.565 16 C -0.297 4.297 17 H 0.104 0.896 18 C 0.021 3.979 19 N -0.902 5.902 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.055 3.945 25 C -0.122 4.122 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.409 0.591 30 H 0.414 0.586 31 H 0.410 0.590 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.028 0.972 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.392 0.608 39 H 0.270 0.730 40 H 0.017 0.983 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.728 13.720 5.761 21.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.086 3.914 3 N -0.340 5.340 4 C 0.287 3.713 5 O -0.390 6.390 6 C 0.291 3.709 7 N -0.389 5.389 8 O -0.399 6.399 9 C -0.154 4.154 10 C -0.077 4.077 11 N -0.237 5.237 12 C -0.085 4.085 13 C 0.230 3.770 14 O -0.460 6.460 15 N -0.202 5.202 16 C -0.427 4.427 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.072 4.072 25 C -0.160 4.160 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.246 0.754 30 H 0.245 0.755 31 H 0.242 0.758 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.046 0.954 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.225 0.775 39 H 0.080 0.920 40 H 0.036 0.964 41 H 0.122 0.878 42 H 0.103 0.897 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.384 12.685 5.280 21.383 hybrid contribution 1.455 0.943 -0.229 1.749 sum -14.929 13.628 5.051 20.836 Atomic orbital electron populations 1.22191 0.93745 1.03010 1.02997 1.20659 0.94200 0.79239 0.97318 1.46011 1.51570 1.11911 1.24502 1.19952 0.81717 0.86325 0.83269 1.90716 1.36637 1.76543 1.35112 1.20301 0.80691 0.87268 0.82671 1.43530 1.54311 1.15417 1.25678 1.90815 1.36506 1.77133 1.35485 1.21894 0.95735 1.01915 0.95830 1.22124 0.94950 0.96545 0.94109 1.61542 1.11579 1.49112 1.01467 1.21839 0.88089 0.98658 0.99956 1.19745 0.83424 0.86231 0.87624 1.90484 1.49234 1.57099 1.49212 1.41881 1.05796 1.42850 1.29679 1.19746 0.92737 1.22384 1.07813 0.87868 1.25255 0.95428 0.98533 0.98780 1.69621 1.01345 1.44884 1.38543 0.85811 0.78670 0.79493 0.80439 1.19215 1.20811 1.20765 1.22213 0.94700 0.95403 0.94887 1.21992 0.95693 1.01150 0.97165 0.92736 0.90432 0.91156 0.75417 0.75519 0.75800 0.88827 0.90908 0.90312 0.95361 0.89344 0.93630 0.77529 0.91964 0.96436 0.87767 0.89738 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 8.41 37.16 0.31 -1.29 16 2 C 0.17 1.89 0.66 -131.70 -0.09 1.81 16 3 N -0.69 -7.43 4.16 -47.92 -0.20 -7.63 16 4 C 0.51 5.84 7.31 -11.58 -0.08 5.76 16 5 O -0.51 -6.59 12.69 5.50 0.07 -6.52 16 6 C 0.51 5.46 8.16 -11.58 -0.09 5.37 16 7 N -0.82 -5.76 8.87 30.91 0.27 -5.49 16 8 O -0.52 -6.90 17.31 5.50 0.10 -6.81 16 9 C -0.12 -1.17 4.93 -26.65 -0.13 -1.30 16 10 C 0.05 0.62 5.30 -3.84 -0.02 0.60 16 11 N -0.51 -8.37 4.40 -236.12 -1.04 -9.41 16 12 C 0.05 0.82 5.45 -4.97 -0.03 0.80 16 13 C 0.44 10.50 7.46 -10.98 -0.08 10.41 16 14 O -0.58 -15.43 13.90 5.55 0.08 -15.35 16 15 N -0.57 -14.39 5.29 -10.96 -0.06 -14.44 16 16 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 17 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 19 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 20 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 C 0.06 0.93 4.96 -3.84 -0.02 0.91 16 25 C -0.12 -1.72 4.71 -26.65 -0.13 -1.84 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.88 6.16 -51.93 -0.32 0.56 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.41 4.14 6.94 -40.82 -0.28 3.86 16 30 H 0.41 2.36 8.30 -40.82 -0.34 2.02 16 31 H 0.41 2.05 8.93 -40.82 -0.36 1.69 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 35 H 0.03 0.33 7.01 -51.93 -0.36 -0.04 16 36 H 0.09 1.42 7.99 -51.93 -0.41 1.01 16 37 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 38 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 39 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.02 0.29 7.69 -51.93 -0.40 -0.11 16 41 H 0.10 2.16 5.78 -51.93 -0.30 1.86 16 42 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.08 1.26 6.14 -51.93 -0.32 0.94 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -33.27 348.22 -6.32 -39.59 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -5.89 Total: 15.40 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: -0.60 Total: 13.25 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.30 Total: -60.94 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: 0.24 Total: -28.69 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.27 -6.32 -39.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483972229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.334 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds