Wall clock time and date at job start Fri Apr 10 2020 18:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46828 * 2 1 4 4 C 1.53006 * 109.46811 * 240.00037 * 2 1 3 5 5 N 1.46500 * 109.46998 * 184.99974 * 4 2 1 6 6 C 1.46503 * 119.99822 * 270.00192 * 5 4 2 7 7 C 1.34777 * 120.00124 * 89.99868 * 5 4 2 8 8 O 1.21275 * 119.99803 * 359.97438 * 7 5 4 9 9 C 1.50699 * 120.00130 * 180.02562 * 7 5 4 10 10 C 1.52998 * 109.47238 * 180.02562 * 9 7 5 11 11 C 1.52999 * 109.47373 * 180.02562 * 10 9 7 12 12 H 1.09009 * 110.52716 * 302.16806 * 11 10 9 13 13 N 1.47315 * 110.60104 * 64.99411 * 11 10 9 14 14 C 1.34525 * 106.61346 * 118.52819 * 13 11 10 15 15 O 1.21540 * 123.76985 * 180.02562 * 14 13 11 16 16 N 1.33789 * 112.46132 * 0.02562 * 14 13 11 17 17 C 1.34773 * 111.64621 * 359.97438 * 16 14 13 18 18 O 1.21228 * 127.15787 * 180.02562 * 17 16 14 19 19 N 1.46493 * 109.47168 * 120.00117 * 2 1 3 20 20 C 1.36940 * 120.00317 * 274.99962 * 19 2 1 21 21 H 1.07999 * 119.99727 * 359.97438 * 20 19 2 22 22 C 1.38806 * 120.00128 * 180.02562 * 20 19 2 23 23 N 1.31615 * 120.00100 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99731 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47463 * 89.99524 * 24 22 20 26 26 H 1.48497 * 109.47178 * 209.99762 * 24 22 20 27 27 H 1.48495 * 109.46984 * 329.99589 * 24 22 20 28 28 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46911 * 299.99883 * 1 2 3 30 30 H 1.09009 * 109.47170 * 60.00031 * 1 2 3 31 31 H 1.08993 * 109.46955 * 305.00200 * 4 2 1 32 32 H 1.09000 * 109.47050 * 65.00029 * 4 2 1 33 33 H 1.09007 * 109.47177 * 89.99828 * 6 5 4 34 34 H 1.09002 * 109.47019 * 209.99587 * 6 5 4 35 35 H 1.09001 * 109.47429 * 329.99755 * 6 5 4 36 36 H 1.08998 * 109.47139 * 300.00541 * 9 7 5 37 37 H 1.09005 * 109.47151 * 60.00232 * 9 7 5 38 38 H 1.09007 * 109.47087 * 300.00107 * 10 9 7 39 39 H 1.08999 * 109.47095 * 59.99525 * 10 9 7 40 40 H 0.96990 * 126.69296 * 298.49709 * 13 11 10 41 41 H 0.97006 * 124.17832 * 179.97438 * 16 14 13 42 42 H 0.97003 * 120.00120 * 95.00139 * 19 2 1 43 43 H 0.97006 * 119.99764 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.3342 0.2341 -1.7614 7 6 4.0757 -1.8987 -0.6117 8 8 3.3851 -2.7763 -0.1388 9 6 5.5776 -2.0066 -0.5509 10 6 5.9674 -3.3090 0.1511 11 6 7.4922 -3.4182 0.2134 12 1 7.9196 -3.3781 -0.7886 13 7 8.0541 -2.3513 1.0597 14 6 8.6827 -2.9612 2.0807 15 8 9.2594 -2.3673 2.9706 16 7 8.6022 -4.2947 2.0072 17 6 7.9073 -4.6918 0.9229 18 8 7.6645 -5.8305 0.5854 19 7 2.0183 -0.6906 1.1961 20 6 2.1491 -0.0075 2.3757 21 1 1.8927 1.0404 2.4242 22 6 2.6123 -0.6618 3.5089 23 7 2.9254 -1.9388 3.4498 24 14 2.7901 0.2699 5.1182 25 1 1.5225 0.1777 5.8862 26 1 3.8951 -0.3227 5.9138 27 1 3.0940 1.6953 4.8339 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8901 31 1 1.6053 -1.7197 -1.2952 32 1 1.7515 -0.1583 -2.1370 33 1 4.5399 0.9849 -0.9983 34 1 5.2734 -0.1925 -2.1139 35 1 3.8102 0.6989 -2.5965 36 1 5.9833 -2.0040 -1.5625 37 1 5.9806 -1.1595 0.0044 38 1 5.5616 -3.3120 1.1628 39 1 5.5644 -4.1558 -0.4044 40 1 7.9848 -1.3956 0.9096 41 1 8.9955 -4.9009 2.6545 42 1 2.2490 -1.6318 1.1525 43 1 3.2487 -2.3961 4.2418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485954144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:56 Heat of formation + Delta-G solvation = -100.022671 kcal Electronic energy + Delta-G solvation = -27152.625572 eV Core-core repulsion = 23232.860899 eV Total energy + Delta-G solvation = -3919.764673 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.36983 -40.80012 -39.72755 -37.78462 -37.36167 -35.87311 -35.58367 -33.92332 -33.05045 -30.59448 -29.18186 -27.96348 -26.56425 -25.66859 -24.34931 -23.56672 -22.33232 -21.48830 -19.94171 -19.42624 -19.21346 -18.03228 -17.90607 -17.51150 -17.05190 -16.91125 -16.81609 -16.45625 -16.37907 -15.64536 -15.55351 -15.28952 -14.81890 -14.70375 -14.20343 -13.94040 -13.66399 -13.48027 -13.43794 -13.20258 -12.99760 -12.88262 -12.83504 -12.65227 -12.33640 -12.20773 -12.10648 -11.97021 -11.80271 -11.56250 -11.50606 -11.35993 -10.94567 -10.56077 -10.49166 -9.35050 -8.87693 -7.84107 -5.11977 0.51739 1.41634 1.42094 1.43092 1.51186 1.93875 1.95967 2.17317 2.37579 2.56880 2.94529 3.45217 3.52087 3.88286 3.92349 4.00274 4.21914 4.25121 4.36552 4.40115 4.47017 4.56034 4.66804 4.71252 4.75571 4.86324 4.96493 5.01161 5.06329 5.10629 5.10910 5.23951 5.31019 5.49993 5.56730 5.79483 5.85615 5.86582 6.34017 6.36497 6.69044 7.10248 7.41369 7.55386 8.29710 8.53719 9.36132 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.010978 B = 0.005077 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.969384 B = 5514.142476 C = 7084.908416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.046 0.954 4 C 0.115 3.885 5 N -0.611 5.611 6 C 0.074 3.926 7 C 0.503 3.497 8 O -0.576 6.576 9 C -0.122 4.122 10 C -0.098 4.098 11 C 0.110 3.890 12 H 0.185 0.815 13 N -0.703 5.703 14 C 0.702 3.298 15 O -0.588 6.588 16 N -0.675 5.675 17 C 0.531 3.469 18 O -0.494 6.494 19 N -0.736 5.736 20 C -0.230 4.230 21 H 0.069 0.931 22 C -0.074 4.074 23 N -0.956 5.956 24 Si 0.957 3.043 25 H -0.293 1.293 26 H -0.303 1.303 27 H -0.267 1.267 28 H 0.032 0.968 29 H 0.032 0.968 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.117 0.883 33 H 0.044 0.956 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.146 0.854 37 H 0.101 0.899 38 H 0.039 0.961 39 H 0.090 0.910 40 H 0.451 0.549 41 H 0.438 0.562 42 H 0.386 0.614 43 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.741 2.803 -17.376 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.034 3.966 3 H 0.064 0.936 4 C -0.009 4.009 5 N -0.344 5.344 6 C -0.067 4.067 7 C 0.292 3.708 8 O -0.455 6.455 9 C -0.161 4.161 10 C -0.137 4.137 11 C 0.002 3.998 12 H 0.202 0.798 13 N -0.369 5.369 14 C 0.402 3.598 15 O -0.465 6.465 16 N -0.345 5.345 17 C 0.318 3.682 18 O -0.365 6.365 19 N -0.380 5.380 20 C -0.362 4.362 21 H 0.087 0.913 22 C -0.267 4.267 23 N -0.606 5.606 24 Si 0.788 3.212 25 H -0.221 1.221 26 H -0.230 1.230 27 H -0.192 1.192 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.135 0.865 33 H 0.063 0.937 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.164 0.836 37 H 0.119 0.881 38 H 0.058 0.942 39 H 0.108 0.892 40 H 0.298 0.702 41 H 0.281 0.719 42 H 0.222 0.778 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 10.524 2.234 -16.845 19.988 hybrid contribution -0.176 0.002 2.113 2.120 sum 10.348 2.236 -14.733 18.142 Atomic orbital electron populations 1.22279 0.97983 1.00351 1.01003 1.20977 0.92775 0.95564 0.87237 0.93558 1.21743 0.80376 1.00834 0.97904 1.47759 1.06678 1.21557 1.58381 1.22047 0.96273 0.89840 0.98581 1.21154 0.91963 0.81297 0.76357 1.90697 1.66151 1.42101 1.46532 1.21607 0.90930 0.98696 1.04897 1.21382 0.90984 0.99524 1.01813 1.22273 0.95805 0.83095 0.98638 0.79800 1.45538 1.55862 1.10210 1.25241 1.15990 0.79502 0.81685 0.82657 1.91029 1.49430 1.67978 1.38047 1.44261 1.53153 1.08810 1.28259 1.21094 0.75644 0.90863 0.80620 1.90835 1.54469 1.22276 1.68886 1.42976 1.77904 1.11450 1.05708 1.19541 1.34170 0.93772 0.88741 0.91313 1.25413 1.03860 0.96692 1.00748 1.69932 1.52594 1.09891 1.28231 0.85370 0.76475 0.78338 0.81011 1.22106 1.23034 1.19214 0.94859 0.94893 0.90145 0.92783 0.86479 0.93714 0.88043 0.88899 0.83612 0.88112 0.94180 0.89152 0.70206 0.71931 0.77773 0.95002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.44 9.49 71.98 0.68 -4.76 16 2 C 0.14 5.49 3.20 44.99 0.14 5.64 16 3 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 4 C 0.12 3.47 5.19 86.38 0.45 3.92 16 5 N -0.61 -16.87 2.77 -846.74 -2.35 -19.22 16 6 C 0.07 1.19 10.29 127.77 1.31 2.50 16 7 C 0.50 16.64 6.97 87.66 0.61 17.25 16 8 O -0.58 -26.16 13.30 -3.02 -0.04 -26.20 16 9 C -0.12 -2.55 4.15 29.85 0.12 -2.43 16 10 C -0.10 -2.45 4.28 30.59 0.13 -2.32 16 11 C 0.11 1.86 3.70 44.37 0.16 2.02 16 12 H 0.19 1.24 8.14 -2.38 -0.02 1.22 16 13 N -0.70 -13.22 5.94 -459.60 -2.73 -15.95 16 14 C 0.70 18.12 8.99 179.44 1.61 19.74 16 15 O -0.59 -20.01 18.04 -3.84 -0.07 -20.08 16 16 N -0.67 -15.06 5.70 -441.13 -2.52 -17.58 16 17 C 0.53 12.12 8.14 87.94 0.72 12.83 16 18 O -0.49 -14.09 18.02 -2.87 -0.05 -14.14 16 19 N -0.74 -37.85 4.52 -322.95 -1.46 -39.31 16 20 C -0.23 -12.99 9.93 84.03 0.83 -12.16 16 21 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 22 C -0.07 -4.43 5.50 84.86 0.47 -3.96 16 23 N -0.96 -61.38 13.06 21.65 0.28 -61.10 16 24 Si 0.96 48.19 29.55 68.60 2.03 50.22 16 25 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 26 H -0.30 -15.66 7.11 99.48 0.71 -14.95 16 27 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 28 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.05 1.91 7.42 -2.39 -0.02 1.89 16 32 H 0.12 2.38 7.89 -2.39 -0.02 2.36 16 33 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.10 0.88 6.44 -2.39 -0.02 0.87 16 35 H 0.09 1.01 7.89 -2.39 -0.02 0.99 16 36 H 0.15 1.39 7.40 -2.39 -0.02 1.37 16 37 H 0.10 1.97 7.33 -2.38 -0.02 1.95 16 38 H 0.04 1.47 8.10 -2.38 -0.02 1.45 16 39 H 0.09 2.37 8.10 -2.39 -0.02 2.36 16 40 H 0.45 6.71 8.37 -92.72 -0.78 5.94 16 41 H 0.44 8.35 8.96 -92.70 -0.83 7.52 16 42 H 0.39 22.11 5.02 -92.71 -0.47 21.65 16 43 H 0.24 15.33 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -90.33 359.91 -0.66 -90.99 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: -1.01 Total: 34.10 kcal Atomic # 6 Polarization: 31.02 SS G_CDS: 7.25 Total: 38.27 kcal Atomic # 7 Polarization: -144.38 SS G_CDS: -8.77 Total: -153.16 kcal Atomic # 8 Polarization: -60.26 SS G_CDS: -0.16 Total: -60.42 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -90.33 -0.66 -90.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485954144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.029 kcal (2) G-P(sol) polarization free energy of solvation -90.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds