Wall clock time and date at job start Fri Apr 10 2020 18:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33224 * 126.01961 * 2 1 4 4 C 1.31533 * 109.76153 * 180.25484 * 3 2 1 5 5 O 1.35206 * 125.49513 * 179.71262 * 4 3 2 6 6 N 1.34947 * 109.01518 * 359.74861 * 4 3 2 7 7 H 0.96999 * 126.54602 * 180.02562 * 6 4 3 8 8 C 1.36720 * 126.01779 * 179.82175 * 2 1 3 9 9 C 1.46382 * 126.82388 * 0.02562 * 8 2 1 10 10 O 1.21728 * 120.00316 * 6.74215 * 9 8 2 11 11 N 1.34777 * 119.99903 * 186.74089 * 9 8 2 12 12 C 1.46502 * 119.99878 * 6.18638 * 11 9 8 13 13 C 1.46502 * 120.00204 * 186.19258 * 11 9 8 14 14 C 1.53002 * 109.46514 * 269.99730 * 13 11 9 15 15 O 1.42899 * 109.47063 * 65.00159 * 14 13 11 16 16 C 1.42907 * 113.99680 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.46859 * 179.97438 * 16 15 14 18 18 N 1.46503 * 109.47251 * 64.99773 * 17 16 15 19 19 C 1.36932 * 120.00308 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00262 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00178 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00099 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 120.00071 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47497 * 89.99797 * 23 21 19 25 25 H 1.48498 * 109.47127 * 209.99623 * 23 21 19 26 26 H 1.48498 * 109.47011 * 329.99802 * 23 21 19 27 27 H 1.09004 * 109.47073 * 270.17745 * 1 2 3 28 28 H 1.08990 * 109.46753 * 30.17620 * 1 2 3 29 29 H 1.08998 * 109.47006 * 150.17942 * 1 2 3 30 30 H 0.96702 * 113.99458 * 270.03845 * 5 4 3 31 31 H 1.09007 * 109.47336 * 275.82719 * 12 11 9 32 32 H 1.08997 * 109.47019 * 35.83152 * 12 11 9 33 33 H 1.09006 * 109.47045 * 155.83028 * 12 11 9 34 34 H 1.08996 * 109.47619 * 149.99998 * 13 11 9 35 35 H 1.08999 * 109.46985 * 29.99575 * 13 11 9 36 36 H 1.09007 * 109.46619 * 184.99658 * 14 13 11 37 37 H 1.08995 * 109.47494 * 304.99755 * 14 13 11 38 38 H 1.09000 * 109.47169 * 299.99156 * 16 15 14 39 39 H 1.08995 * 109.47101 * 59.99858 * 16 15 14 40 40 H 1.09000 * 109.47339 * 184.99694 * 17 16 15 41 41 H 1.09000 * 109.47642 * 305.00100 * 17 16 15 42 42 H 0.97001 * 119.99951 * 0.02562 * 18 17 16 43 43 H 0.96995 * 120.00443 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2905 1.0775 0.0000 4 6 3.5532 0.7093 -0.0055 5 8 4.6150 1.5463 -0.0127 6 7 3.6181 -0.6386 -0.0037 7 1 4.4243 -1.1781 -0.0063 8 6 2.3110 -1.1058 0.0034 9 6 1.8792 -2.5045 0.0073 10 8 0.6994 -2.7776 -0.1161 11 7 2.7879 -3.4899 0.1474 12 6 4.1870 -3.1612 0.4312 13 6 2.3765 -4.8899 0.0158 14 6 1.9585 -5.4294 1.3851 15 8 0.7943 -4.7340 1.8359 16 6 0.3182 -5.1645 3.1127 17 6 -0.9238 -4.3559 3.4929 18 7 -2.0077 -4.6552 2.5539 19 6 -3.2253 -4.0451 2.6967 20 1 -3.3865 -3.3429 3.5013 21 6 -4.2522 -4.3283 1.8067 22 7 -5.4224 -3.7415 1.9436 23 14 -3.9734 -5.5423 0.4146 24 1 -4.3273 -6.9100 0.8722 25 1 -4.8259 -5.1717 -0.7434 26 1 -2.5454 -5.5102 0.0085 27 1 -0.3633 0.0032 1.0277 28 1 -0.3632 0.8883 -0.5165 29 1 -0.3633 -0.8916 -0.5110 30 1 4.9191 1.7882 -0.8982 31 1 4.7052 -2.9410 -0.5022 32 1 4.2301 -2.2901 1.0850 33 1 4.6669 -4.0079 0.9222 34 1 3.2096 -5.4788 -0.3679 35 1 1.5353 -4.9580 -0.6739 36 1 1.7375 -6.4937 1.3042 37 1 2.7697 -5.2799 2.0977 38 1 0.0629 -6.2232 3.0673 39 1 1.0952 -5.0098 3.8612 40 1 -1.2348 -4.6212 4.5034 41 1 -0.6912 -3.2918 3.4520 42 1 -1.8632 -5.2862 1.8315 43 1 -6.1401 -3.9396 1.3220 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486494399.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:04 Heat of formation + Delta-G solvation = -50.823065 kcal Electronic energy + Delta-G solvation = -26930.877651 eV Core-core repulsion = 23013.246434 eV Total energy + Delta-G solvation = -3917.631218 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.46267 -40.62537 -38.96692 -38.37258 -37.05041 -36.34886 -34.42609 -33.60046 -32.14644 -31.08689 -29.57000 -28.68033 -27.19456 -25.22278 -24.55590 -23.33276 -22.80580 -22.08086 -20.93210 -19.74966 -19.61582 -18.49954 -17.84425 -17.60751 -17.18563 -16.95587 -16.86642 -16.48614 -16.02639 -15.75066 -15.17937 -14.91350 -14.79097 -14.56593 -14.29925 -14.21594 -14.03362 -13.73594 -13.65168 -13.39861 -13.26508 -13.13451 -13.02744 -12.81201 -12.66578 -12.40699 -12.14469 -11.88088 -11.70117 -11.38617 -11.17526 -10.99199 -10.92281 -10.42604 -9.83783 -9.42977 -9.25914 -8.00823 -5.32033 0.08015 1.28729 1.35390 1.42157 1.51287 1.56180 1.94161 2.24263 2.51143 2.78684 2.86886 3.31487 3.52175 3.69789 3.84414 3.97661 4.01824 4.06364 4.24022 4.26717 4.39160 4.43019 4.45472 4.49468 4.53995 4.58804 4.68729 4.74000 4.86841 4.94632 4.96482 4.96967 5.10717 5.40686 5.49763 5.75270 5.79979 6.22193 6.23584 6.47673 6.64268 6.68442 7.10606 7.16076 7.87757 8.07674 9.21173 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.014268 B = 0.004190 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.944123 B = 6681.649026 C = 7734.861653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.093 3.907 3 N -0.523 5.523 4 C 0.419 3.581 5 O -0.438 6.438 6 N -0.538 5.538 7 H 0.441 0.559 8 C -0.081 4.081 9 C 0.584 3.416 10 O -0.531 6.531 11 N -0.612 5.612 12 C 0.053 3.947 13 C 0.120 3.880 14 C 0.032 3.968 15 O -0.393 6.393 16 C 0.064 3.936 17 C 0.154 3.846 18 N -0.750 5.750 19 C -0.232 4.232 20 H 0.054 0.946 21 C -0.061 4.061 22 N -0.984 5.984 23 Si 0.955 3.045 24 H -0.271 1.271 25 H -0.295 1.295 26 H -0.262 1.262 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.432 0.568 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.142 0.858 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.010 0.990 42 H 0.366 0.634 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.734 -0.192 -6.814 33.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.041 4.041 3 N -0.255 5.255 4 C 0.117 3.883 5 O -0.243 6.243 6 N -0.166 5.166 7 H 0.291 0.709 8 C -0.196 4.196 9 C 0.371 3.629 10 O -0.406 6.406 11 N -0.346 5.346 12 C -0.089 4.089 13 C -0.002 4.002 14 C -0.045 4.045 15 O -0.312 6.312 16 C -0.013 4.013 17 C 0.028 3.972 18 N -0.396 5.396 19 C -0.363 4.363 20 H 0.072 0.928 21 C -0.253 4.253 22 N -0.635 5.635 23 Si 0.783 3.217 24 H -0.197 1.197 25 H -0.222 1.222 26 H -0.187 1.187 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.294 0.706 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.134 0.866 34 H 0.160 0.840 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.028 0.972 42 H 0.199 0.801 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 31.721 0.755 -6.291 32.347 hybrid contribution 0.307 -1.267 -0.921 1.596 sum 32.027 -0.512 -7.212 32.833 Atomic orbital electron populations 1.20231 0.86948 1.03592 1.02739 1.20943 0.96781 0.86965 0.99430 1.70193 1.00182 1.30963 1.24186 1.20223 0.87342 0.79689 1.01074 1.84816 1.41804 1.60943 1.36704 1.44369 1.08395 1.07452 1.56343 0.70912 1.20646 0.83895 0.94696 1.20387 1.16951 0.85557 0.83129 0.77234 1.90996 1.17564 1.82601 1.49428 1.47657 1.09454 1.06001 1.71482 1.22405 0.80291 1.04018 1.02139 1.21725 1.01979 0.80505 0.95956 1.23197 0.88075 0.96490 0.96734 1.88223 1.45406 1.62131 1.35472 1.22655 0.95020 0.97651 0.85925 1.20812 0.86685 0.96933 0.92764 1.42593 1.09816 1.52754 1.34403 1.19067 0.88545 1.18600 1.10125 0.92765 1.25434 0.95465 1.02531 1.01844 1.69883 1.04022 1.48750 1.40868 0.85385 0.77828 0.79266 0.79249 1.19665 1.22154 1.18749 0.91768 0.89865 0.90604 0.70552 0.89546 0.91689 0.86611 0.83999 0.91934 0.91199 0.91375 0.92465 0.90457 0.93434 0.97190 0.80098 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.70 9.95 71.24 0.71 -1.99 16 2 C 0.09 2.95 7.14 41.99 0.30 3.25 16 3 N -0.52 -15.13 11.22 -301.66 -3.38 -18.51 16 4 C 0.42 8.42 9.43 179.99 1.70 10.11 16 5 O -0.44 -5.35 13.62 -84.87 -1.16 -6.50 16 6 N -0.54 -9.08 5.18 -300.13 -1.55 -10.63 16 7 H 0.44 3.60 5.11 -92.71 -0.47 3.13 16 8 C -0.08 -2.18 6.63 39.80 0.26 -1.92 16 9 C 0.58 17.52 7.32 86.36 0.63 18.15 16 10 O -0.53 -22.02 13.31 8.84 0.12 -21.90 16 11 N -0.61 -11.89 2.86 -851.81 -2.43 -14.32 16 12 C 0.05 0.40 8.81 127.77 1.13 1.53 16 13 C 0.12 2.20 5.82 86.38 0.50 2.71 16 14 C 0.03 0.68 6.28 71.98 0.45 1.13 16 15 O -0.39 -13.39 8.82 -135.70 -1.20 -14.58 16 16 C 0.06 2.04 6.07 71.98 0.44 2.48 16 17 C 0.15 6.64 6.65 86.38 0.57 7.21 16 18 N -0.75 -39.83 5.35 -343.45 -1.84 -41.67 16 19 C -0.23 -14.65 10.47 84.03 0.88 -13.77 16 20 H 0.05 3.70 8.06 -2.91 -0.02 3.68 16 21 C -0.06 -3.94 5.50 84.86 0.47 -3.47 16 22 N -0.98 -67.23 13.97 21.65 0.30 -66.93 16 23 Si 0.96 50.28 27.73 68.60 1.90 52.18 16 24 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 25 H -0.29 -15.53 7.11 99.48 0.71 -14.82 16 26 H -0.26 -13.33 6.52 99.48 0.65 -12.69 16 27 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 28 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.08 2.96 6.35 -2.39 -0.02 2.94 16 30 H 0.43 0.24 9.06 -74.06 -0.67 -0.43 16 31 H 0.09 0.17 7.50 -2.38 -0.02 0.16 16 32 H 0.06 0.57 5.64 -2.39 -0.01 0.56 16 33 H 0.12 0.24 8.03 -2.38 -0.02 0.22 16 34 H 0.14 1.08 8.07 -2.39 -0.02 1.06 16 35 H 0.06 1.61 7.51 -2.39 -0.02 1.59 16 36 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.37 18.99 5.53 -92.71 -0.51 18.48 16 43 H 0.26 16.68 8.31 -92.71 -0.77 15.91 16 Total: -1.00 -95.43 357.17 -1.85 -97.28 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -0.65 Total: 20.18 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: 8.04 Total: 25.42 kcal Atomic # 7 Polarization: -143.15 SS G_CDS: -8.91 Total: -152.06 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -2.24 Total: -42.99 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 1.90 Total: 52.18 kcal Total: -95.43 -1.85 -97.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486494399.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.456 kcal (2) G-P(sol) polarization free energy of solvation -95.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds