Wall clock time and date at job start Fri Apr 10 2020 18:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 C 1.52996 * 109.47530 * 239.99206 * 2 1 3 5 5 N 1.46498 * 109.47059 * 184.99929 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 N 1.46506 * 109.46609 * 119.99404 * 2 1 3 15 15 C 1.34782 * 119.99726 * 274.99704 * 14 2 1 16 16 O 1.21278 * 120.00302 * 0.02562 * 15 14 2 17 17 C 1.50704 * 119.99703 * 179.97438 * 15 14 2 18 18 C 1.52995 * 109.46780 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.47053 * 180.02562 * 18 17 15 20 20 N 1.46489 * 109.47291 * 180.02562 * 19 18 17 21 21 C 1.34765 * 124.18026 * 269.72741 * 20 19 18 22 22 O 1.21236 * 127.15632 * 359.97438 * 21 20 19 23 23 C 1.51582 * 105.68724 * 179.97438 * 21 20 19 24 24 N 1.47308 * 103.59146 * 0.31717 * 23 21 20 25 25 C 1.33798 * 124.17791 * 90.02778 * 20 19 18 26 26 O 1.21534 * 123.77111 * 359.95549 * 25 20 19 27 27 H 1.09000 * 109.46800 * 60.01246 * 1 2 3 28 28 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47478 * 300.00790 * 1 2 3 30 30 H 1.09004 * 109.47066 * 65.00196 * 4 2 1 31 31 H 1.08994 * 109.46974 * 305.00344 * 4 2 1 32 32 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 33 33 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 34 34 H 0.97000 * 120.00390 * 95.00648 * 14 2 1 35 35 H 1.09000 * 109.47086 * 300.00860 * 17 15 14 36 36 H 1.09006 * 109.46761 * 60.00688 * 17 15 14 37 37 H 1.09000 * 109.47753 * 300.00133 * 18 17 15 38 38 H 1.08996 * 109.47096 * 60.00516 * 18 17 15 39 39 H 1.09000 * 109.46678 * 300.00459 * 19 18 17 40 40 H 1.09004 * 109.46581 * 59.99683 * 19 18 17 41 41 H 1.09003 * 110.76438 * 241.70805 * 23 21 20 42 42 H 1.09003 * 110.56675 * 118.83034 * 23 21 20 43 43 H 0.97003 * 126.68878 * 179.77259 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5001 -0.8264 -1.1903 6 6 4.1835 -1.4436 -2.2039 7 1 3.6465 -1.8489 -3.0488 8 6 5.5665 -1.5482 -2.1455 9 7 6.2208 -1.0547 -1.1156 10 14 6.4987 -2.3894 -3.5285 11 1 6.2469 -1.6713 -4.8037 12 1 7.9529 -2.3708 -3.2282 13 1 6.0375 -3.7955 -3.6527 14 7 2.0183 -0.6905 1.1963 15 6 2.1470 -0.0180 2.3572 16 8 1.8582 1.1587 2.4117 17 6 2.6486 -0.7284 3.5880 18 6 2.6996 0.2547 4.7591 19 6 3.2095 -0.4664 6.0085 20 7 3.2578 0.4748 7.1301 21 6 4.3316 1.2273 7.4413 22 8 5.3996 1.2518 6.8680 23 6 3.9264 2.0366 8.6573 24 7 2.5440 1.5999 8.9188 25 6 2.2431 0.6893 7.9754 26 8 1.1701 0.1236 7.9004 27 1 -0.3633 0.5136 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.7518 -0.1585 -2.1369 31 1 1.6055 -1.7199 -1.2949 32 1 3.9825 -0.4627 -0.4313 33 1 7.1872 -1.1275 -1.0749 34 1 2.2490 -1.6317 1.1529 35 1 1.9757 -1.5502 3.8328 36 1 3.6478 -1.1210 3.3989 37 1 3.3723 1.0768 4.5146 38 1 1.7003 0.6469 4.9480 39 1 2.5371 -1.2886 6.2533 40 1 4.2089 -0.8583 5.8193 41 1 3.9566 3.1040 8.4386 42 1 4.5697 1.8018 9.5053 43 1 1.9638 1.9089 9.6321 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497979589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:35 Heat of formation + Delta-G solvation = -106.515963 kcal Electronic energy + Delta-G solvation = -25609.407547 eV Core-core repulsion = 21689.361305 eV Total energy + Delta-G solvation = -3920.046243 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.30578 -40.86518 -39.66009 -37.84074 -37.18543 -36.64904 -35.43645 -33.92627 -32.95616 -31.52390 -28.96713 -28.07317 -27.41140 -24.68436 -24.10527 -23.77932 -22.02105 -21.35772 -21.26924 -19.24654 -19.05944 -18.16145 -18.05516 -17.63626 -17.22774 -16.76251 -16.67498 -16.37921 -16.23678 -15.45059 -15.38585 -15.29097 -15.07347 -14.97155 -14.79459 -14.49447 -14.00008 -13.67181 -13.60156 -13.48398 -13.07265 -12.97095 -12.86372 -12.74776 -12.61583 -12.19844 -12.04752 -11.90369 -11.88252 -11.70383 -11.32705 -11.02933 -10.95535 -10.77624 -10.41123 -10.01445 -9.01508 -7.94082 -5.24025 0.61805 1.19713 1.48550 1.51221 1.57402 1.69932 1.92415 2.26169 2.33734 2.56615 3.06219 3.39794 3.66047 3.73477 3.83668 3.88566 4.04192 4.11437 4.28022 4.30512 4.32188 4.40838 4.43821 4.51819 4.61365 4.65926 4.71771 4.80591 4.86451 4.93890 5.01360 5.12618 5.16671 5.30332 5.50379 5.62156 5.84320 6.04210 6.26355 6.38836 6.62921 7.10743 7.31241 7.33652 8.07110 8.31150 9.28654 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.016113 B = 0.002704 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.335497 B =10353.786268 C =11666.150249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.139 3.861 3 H 0.055 0.945 4 C 0.146 3.854 5 N -0.744 5.744 6 C -0.246 4.246 7 H 0.079 0.921 8 C -0.074 4.074 9 N -0.968 5.968 10 Si 0.974 3.026 11 H -0.281 1.281 12 H -0.298 1.298 13 H -0.274 1.274 14 N -0.708 5.708 15 C 0.509 3.491 16 O -0.591 6.591 17 C -0.130 4.130 18 C -0.106 4.106 19 C 0.119 3.881 20 N -0.582 5.582 21 C 0.509 3.491 22 O -0.504 6.504 23 C 0.075 3.925 24 N -0.709 5.709 25 C 0.695 3.305 26 O -0.583 6.583 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.374 0.626 33 H 0.250 0.750 34 H 0.411 0.589 35 H 0.129 0.871 36 H 0.110 0.890 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.153 0.847 42 H 0.162 0.838 43 H 0.455 0.545 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.859 2.590 22.615 24.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.033 3.967 3 H 0.073 0.927 4 C 0.019 3.981 5 N -0.387 5.387 6 C -0.378 4.378 7 H 0.097 0.903 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.803 3.197 11 H -0.207 1.207 12 H -0.225 1.225 13 H -0.200 1.200 14 N -0.359 5.359 15 C 0.297 3.703 16 O -0.472 6.472 17 C -0.170 4.170 18 C -0.145 4.145 19 C -0.002 4.002 20 N -0.327 5.327 21 C 0.299 3.701 22 O -0.376 6.376 23 C -0.052 4.052 24 N -0.375 5.375 25 C 0.395 3.605 26 O -0.460 6.460 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.206 0.794 33 H 0.059 0.941 34 H 0.247 0.753 35 H 0.147 0.853 36 H 0.128 0.872 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.171 0.829 42 H 0.179 0.821 43 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -9.022 2.992 22.051 24.013 hybrid contribution 0.821 -0.341 -0.548 1.044 sum -8.201 2.650 21.503 23.166 Atomic orbital electron populations 1.21991 0.92784 1.03139 1.02450 1.21065 0.95282 0.96025 0.84282 0.92708 1.21124 0.84060 0.98032 0.94887 1.42534 1.01852 1.69812 1.24519 1.19603 0.89947 1.28412 0.99838 0.90322 1.25573 0.97530 1.03007 1.00533 1.69825 1.07082 1.52639 1.32280 0.85203 0.77017 0.78657 0.78786 1.20694 1.22452 1.20035 1.45994 1.66237 1.14654 1.09011 1.21183 0.76525 0.86935 0.85690 1.90645 1.52615 1.17957 1.86025 1.21561 1.05000 0.99696 0.90748 1.21469 1.01637 0.98092 0.93332 1.21744 1.04723 0.90946 0.82832 1.46504 1.15477 1.41220 1.29532 1.21730 0.82641 0.79622 0.86116 1.90857 1.24028 1.65333 1.57407 1.22712 0.83636 1.02099 0.96721 1.45387 1.16808 1.43014 1.32271 1.16061 0.82991 0.81022 0.80392 1.90997 1.24272 1.54952 1.75770 0.90344 0.90710 0.93154 0.94649 0.94015 0.79388 0.94089 0.75302 0.85313 0.87185 0.93228 0.92144 0.87160 0.87708 0.82929 0.82069 0.69808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.48 71.98 0.68 -3.19 16 2 C 0.14 4.72 2.73 44.99 0.12 4.84 16 3 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 4 C 0.15 5.58 5.82 86.38 0.50 6.08 16 5 N -0.74 -37.01 5.43 -343.46 -1.87 -38.88 16 6 C -0.25 -13.47 9.99 84.03 0.84 -12.63 16 7 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 8 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 9 N -0.97 -59.03 13.06 21.65 0.28 -58.75 16 10 Si 0.97 45.69 29.55 68.60 2.03 47.71 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 14 N -0.71 -22.56 4.52 -442.51 -2.00 -24.56 16 15 C 0.51 16.77 7.79 87.66 0.68 17.45 16 16 O -0.59 -24.11 15.64 -3.02 -0.05 -24.16 16 17 C -0.13 -3.09 5.70 29.85 0.17 -2.92 16 18 C -0.11 -2.68 4.83 30.59 0.15 -2.53 16 19 C 0.12 2.37 5.70 86.38 0.49 2.86 16 20 N -0.58 -11.33 2.60 -773.13 -2.01 -13.34 16 21 C 0.51 8.96 8.32 87.94 0.73 9.70 16 22 O -0.50 -12.94 17.75 -2.89 -0.05 -12.99 16 23 C 0.07 0.42 7.97 85.76 0.68 1.11 16 24 N -0.71 -6.28 6.58 -480.32 -3.16 -9.44 16 25 C 0.69 13.32 8.62 179.44 1.55 14.87 16 26 O -0.58 -15.76 17.48 -3.82 -0.07 -15.83 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.37 20.22 7.33 -92.71 -0.68 19.54 16 33 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 34 H 0.41 11.94 8.60 -92.71 -0.80 11.14 16 35 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 37 H 0.05 1.50 8.10 -2.39 -0.02 1.49 16 38 H 0.06 1.71 8.10 -2.39 -0.02 1.69 16 39 H 0.11 1.93 7.86 -2.39 -0.02 1.91 16 40 H 0.10 1.96 8.00 -2.38 -0.02 1.94 16 41 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.16 -0.14 8.14 -2.39 -0.02 -0.16 16 43 H 0.45 1.57 8.96 -92.71 -0.83 0.74 16 Total: -1.00 -83.11 370.37 -1.08 -84.19 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: -1.25 Total: 34.17 kcal Atomic # 6 Polarization: 24.82 SS G_CDS: 7.07 Total: 31.89 kcal Atomic # 7 Polarization: -136.21 SS G_CDS: -8.76 Total: -144.97 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -0.17 Total: -52.98 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -83.11 -1.08 -84.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497979589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.330 kcal (2) G-P(sol) polarization free energy of solvation -83.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds