Wall clock time and date at job start Fri Apr 10 2020 18:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.46724 * 2 1 4 4 C 1.52995 * 109.46990 * 119.99802 * 2 1 3 5 5 N 1.46496 * 109.47388 * 295.00330 * 4 2 1 6 6 C 1.34778 * 120.00141 * 180.02562 * 5 4 2 7 7 O 1.21347 * 120.00143 * 359.97438 * 6 5 4 8 8 C 1.49452 * 119.99873 * 179.97438 * 6 5 4 9 9 O 1.21352 * 120.00368 * 353.61235 * 8 6 5 10 10 N 1.34782 * 119.99853 * 173.61290 * 8 6 5 11 11 C 1.46928 * 120.62748 * 351.27341 * 10 8 6 12 12 C 1.53194 * 108.88949 * 233.55808 * 11 10 8 13 13 C 1.53076 * 109.29729 * 305.57898 * 12 11 10 14 14 C 1.53040 * 109.65532 * 61.15721 * 13 12 11 15 15 H 1.08991 * 109.50418 * 58.64985 * 14 13 12 16 16 C 1.50700 * 109.49510 * 178.75142 * 14 13 12 17 17 H 1.07995 * 120.00544 * 34.99849 * 16 14 13 18 18 C 1.37883 * 119.99712 * 215.00205 * 16 14 13 19 19 N 1.31515 * 119.99984 * 174.90469 * 18 16 14 20 20 Si 1.86803 * 120.00037 * 354.90530 * 18 16 14 21 21 H 1.48497 * 109.46798 * 94.66334 * 20 18 16 22 22 H 1.48500 * 109.46944 * 214.66632 * 20 18 16 23 23 H 1.48499 * 109.47042 * 334.66587 * 20 18 16 24 24 C 1.46926 * 120.63165 * 171.29622 * 10 8 6 25 25 C 1.50698 * 109.47277 * 240.00070 * 2 1 3 26 26 O 1.20826 * 120.00163 * 239.99885 * 25 2 1 27 27 O 1.34227 * 120.00023 * 59.99710 * 25 2 1 28 28 H 1.08989 * 109.46962 * 299.99761 * 1 2 3 29 29 H 1.08998 * 109.47092 * 60.00495 * 1 2 3 30 30 H 1.09005 * 109.46724 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47198 * 175.00267 * 4 2 1 32 32 H 1.09001 * 109.47554 * 55.00609 * 4 2 1 33 33 H 0.96998 * 120.00301 * 359.97438 * 5 4 2 34 34 H 1.08999 * 109.58763 * 353.41653 * 11 10 8 35 35 H 1.09002 * 109.58608 * 113.70289 * 11 10 8 36 36 H 1.08998 * 109.50040 * 65.39283 * 12 11 10 37 37 H 1.09001 * 109.49449 * 185.48666 * 12 11 10 38 38 H 1.08994 * 109.34804 * 301.13289 * 13 12 11 39 39 H 1.09004 * 109.44061 * 181.23460 * 13 12 11 40 40 H 0.97003 * 120.00101 * 179.97438 * 19 18 16 41 41 H 1.08996 * 109.58859 * 246.15909 * 24 10 8 42 42 H 1.09003 * 109.58551 * 6.44068 * 24 10 8 43 43 H 0.96700 * 117.00155 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 0.0354 2.4423 6 6 1.9964 -0.4131 3.6659 7 8 2.6268 -1.4437 3.7793 8 6 1.6014 0.3591 4.8830 9 8 1.0738 1.4458 4.7675 10 7 1.8312 -0.1515 6.1090 11 6 2.2908 -1.5380 6.2683 12 6 1.3497 -2.2645 7.2344 13 6 1.2595 -1.4748 8.5426 14 6 0.6900 -0.0817 8.2647 15 1 -0.2950 -0.1757 7.8078 16 6 0.5742 0.6816 9.5590 17 1 1.3113 0.5425 10.3359 18 6 -0.4732 1.5575 9.7513 19 7 -0.6314 2.1478 10.9158 20 14 -1.6673 1.9060 8.3577 21 1 -2.8471 1.0128 8.4819 22 1 -2.1089 3.3221 8.4267 23 1 -0.9950 1.6599 7.0566 24 6 1.6265 0.6675 7.3115 25 6 2.0324 -0.7104 -1.2304 26 8 2.7271 -1.6927 -1.1196 27 8 1.7081 -0.2518 -2.4496 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1263 -0.7994 1.2056 32 1 1.6055 -1.7198 1.2952 33 1 1.1488 0.8594 2.3518 34 1 2.2800 -2.0400 5.3009 35 1 3.3035 -1.5432 6.6715 36 1 0.3580 -2.3403 6.7883 37 1 1.7358 -3.2637 7.4359 38 1 2.2547 -1.3803 8.9767 39 1 0.6075 -2.0011 9.2399 40 1 -1.3680 2.7643 11.0510 41 1 2.5840 0.8421 7.8021 42 1 1.1798 1.6217 7.0320 43 1 2.0536 -0.7410 -3.2088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589040232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:58 Heat of formation + Delta-G solvation = -157.705099 kcal Electronic energy + Delta-G solvation = -26416.514397 eV Core-core repulsion = 22461.955676 eV Total energy + Delta-G solvation = -3954.558721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.06038 -40.59650 -38.66363 -37.15317 -36.81752 -36.15008 -33.44993 -32.85310 -31.86793 -30.50873 -27.63775 -26.00620 -25.19182 -24.79084 -22.55926 -21.86278 -21.03055 -20.27257 -19.01234 -18.57203 -17.61133 -17.30415 -16.81644 -16.57222 -16.31569 -15.92040 -15.41485 -15.07535 -14.64851 -14.27525 -14.09984 -14.00700 -13.71653 -13.55862 -13.21108 -13.15689 -12.71215 -12.60042 -12.48537 -12.21773 -12.12344 -11.92849 -11.73862 -11.71130 -11.15104 -10.96066 -10.75062 -10.65156 -10.48240 -10.09382 -9.72287 -9.55579 -9.49328 -9.22846 -8.81551 -8.65672 -8.14281 -6.13710 -4.14723 1.54059 1.68143 2.12590 2.75362 3.29122 3.35118 3.39595 3.49855 3.71207 3.92618 4.24476 4.40850 4.45017 4.47537 4.79849 5.15421 5.16665 5.17460 5.28387 5.40362 5.47468 5.50526 5.62931 5.69074 5.87299 5.98178 6.01386 6.18434 6.20883 6.34955 6.46746 6.54029 6.63415 6.76583 6.82199 6.97195 7.24643 7.32689 7.36404 7.61404 7.70873 7.81135 8.21950 8.46247 8.91758 9.49407 10.98570 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.022440 B = 0.003135 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.499215 B = 8928.496872 C = 9784.256480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 H 0.121 0.879 4 C 0.131 3.869 5 N -0.705 5.705 6 C 0.512 3.488 7 O -0.509 6.509 8 C 0.496 3.504 9 O -0.531 6.531 10 N -0.570 5.570 11 C 0.071 3.929 12 C -0.137 4.137 13 C -0.106 4.106 14 C 0.008 3.992 15 H 0.035 0.965 16 C -0.514 4.514 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.895 5.895 20 Si 0.867 3.133 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.252 1.252 24 C 0.107 3.893 25 C 0.490 3.510 26 O -0.508 6.508 27 O -0.513 6.513 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.413 0.587 34 H 0.128 0.872 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.265 0.735 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.737 -5.554 -24.355 25.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 H 0.138 0.862 4 C 0.008 3.992 5 N -0.360 5.360 6 C 0.294 3.706 7 O -0.385 6.385 8 C 0.278 3.722 9 O -0.409 6.409 10 N -0.302 5.302 11 C -0.050 4.050 12 C -0.175 4.175 13 C -0.144 4.144 14 C -0.012 4.012 15 H 0.053 0.947 16 C -0.552 4.552 17 H 0.094 0.906 18 C -0.128 4.128 19 N -0.532 5.532 20 Si 0.694 3.306 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.176 1.176 24 C -0.014 4.014 25 C 0.331 3.669 26 O -0.395 6.395 27 O -0.325 6.325 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.250 0.750 34 H 0.145 0.855 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 3.849 -5.644 -23.830 24.790 hybrid contribution -0.640 0.385 -1.113 1.340 sum 3.209 -5.259 -24.943 25.693 Atomic orbital electron populations 1.21859 0.90920 1.03749 1.04178 1.21163 0.99289 1.01674 0.89516 0.86160 1.21224 1.01522 0.95218 0.81252 1.45717 1.57194 1.28232 1.04872 1.20565 0.79949 0.85265 0.84774 1.90512 1.38957 1.23751 1.85264 1.19853 0.81299 0.86531 0.84564 1.90746 1.42198 1.21791 1.86116 1.48454 1.62036 1.14204 1.05461 1.22756 0.97464 0.80963 1.03855 1.22026 0.99408 0.98683 0.97409 1.21599 1.00977 0.96856 0.94950 1.19457 0.94314 0.92461 0.94928 0.94663 1.20893 1.11405 1.23791 0.99099 0.90614 1.25086 0.97253 0.95199 0.95241 1.69906 1.31308 1.29340 1.22611 0.86978 0.81638 0.77700 0.84265 1.20516 1.21328 1.17564 1.22727 1.01016 0.95373 0.82258 1.23045 0.76830 0.82329 0.84717 1.90783 1.35555 1.25947 1.87249 1.84505 1.72263 1.58994 1.16753 0.90373 0.90526 0.91478 0.89685 0.89756 0.74977 0.85457 0.91643 0.92421 0.91533 0.92733 0.92165 0.92529 0.91398 0.89685 0.72764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.00 37.16 0.33 -0.49 16 2 C -0.10 -0.61 2.86 -91.77 -0.26 -0.88 16 3 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 4 C 0.13 1.19 4.41 -4.05 -0.02 1.17 16 5 N -0.71 -7.59 5.27 -60.73 -0.32 -7.91 16 6 C 0.51 7.44 7.74 -11.58 -0.09 7.35 16 7 O -0.51 -7.95 13.18 5.50 0.07 -7.88 16 8 C 0.50 8.81 7.73 -11.58 -0.09 8.72 16 9 O -0.53 -10.56 15.93 5.50 0.09 -10.48 16 10 N -0.57 -10.57 2.97 -173.27 -0.52 -11.09 16 11 C 0.07 1.14 5.98 -3.71 -0.02 1.12 16 12 C -0.14 -2.20 6.09 -26.59 -0.16 -2.36 16 13 C -0.11 -2.05 5.14 -26.67 -0.14 -2.18 16 14 C 0.01 0.19 1.79 -91.65 -0.16 0.02 16 15 H 0.04 0.84 5.60 -51.93 -0.29 0.55 16 16 C -0.51 -13.93 8.86 -34.44 -0.31 -14.24 16 17 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 18 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 19 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 20 Si 0.87 21.60 26.62 -169.99 -4.53 17.08 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.25 -6.23 5.99 56.52 0.34 -5.89 16 24 C 0.11 2.27 5.53 -3.71 -0.02 2.25 16 25 C 0.49 3.63 7.63 36.00 0.27 3.90 16 26 O -0.51 -5.50 16.68 -18.75 -0.31 -5.81 16 27 O -0.51 -2.56 13.33 -39.25 -0.52 -3.08 16 28 H 0.08 0.43 7.18 -51.94 -0.37 0.06 16 29 H 0.08 0.35 8.11 -51.93 -0.42 -0.07 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.86 7.96 -51.93 -0.41 0.45 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.41 3.91 7.14 -40.82 -0.29 3.62 16 34 H 0.13 1.99 4.31 -54.82 -0.24 1.75 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.08 1.99 5.89 -51.93 -0.31 1.68 16 43 H 0.41 0.46 9.10 45.56 0.41 0.88 16 LS Contribution 351.32 15.07 5.29 5.29 Total: -1.00 -34.32 351.32 -6.07 -40.39 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.34 Total: 3.20 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -0.76 Total: 6.43 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -0.06 Total: -45.13 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.68 Total: -27.26 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.53 Total: 17.08 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.32 -6.07 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589040232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.317 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds