Wall clock time and date at job start Fri Apr 10 2020 18:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.02013 * 2 1 4 4 C 1.52210 * 110.18886 * 241.26759 * 2 1 3 5 5 C 1.53899 * 110.68056 * 294.20690 * 4 2 1 6 6 C 1.51516 * 107.02757 * 304.00313 * 5 4 2 7 7 H 1.08994 * 109.10874 * 304.27606 * 6 5 4 8 8 O 1.41498 * 118.14408 * 179.87613 * 6 5 4 9 9 C 1.44505 * 108.22794 * 209.51604 * 8 6 5 10 10 H 1.09007 * 109.98955 * 125.58974 * 9 8 6 11 11 C 1.50704 * 109.87132 * 246.64547 * 9 8 6 12 12 O 1.20818 * 119.99865 * 2.87449 * 11 9 8 13 13 O 1.34226 * 119.99862 * 182.87148 * 11 9 8 14 14 C 1.55367 * 107.33660 * 6.08452 * 9 8 6 15 15 C 1.53796 * 101.16105 * 21.53072 * 14 9 8 16 16 H 1.09000 * 111.21625 * 79.70100 * 15 14 9 17 17 N 1.45704 * 116.20716 * 208.14924 * 15 14 9 18 18 C 1.46897 * 111.00021 * 298.81018 * 17 15 14 19 19 C 1.50699 * 109.47304 * 170.00027 * 18 17 15 20 20 O 1.21299 * 119.99724 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00685 * 179.97438 * 19 18 17 22 22 C 1.37093 * 120.00263 * 179.97438 * 21 19 18 23 23 H 1.07994 * 120.00084 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99503 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00442 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99574 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47205 * 89.99756 * 26 24 22 28 28 H 1.48503 * 109.46957 * 209.99459 * 26 24 22 29 29 H 1.48496 * 109.47404 * 329.99502 * 26 24 22 30 30 H 1.08998 * 109.46811 * 301.06919 * 1 2 3 31 31 H 1.08996 * 109.47521 * 61.06804 * 1 2 3 32 32 H 1.09005 * 109.47418 * 181.07169 * 1 2 3 33 33 H 1.09003 * 110.26781 * 173.34180 * 4 2 1 34 34 H 1.08992 * 108.48986 * 53.93331 * 4 2 1 35 35 H 1.08994 * 109.94598 * 184.61694 * 5 4 2 36 36 H 1.09006 * 109.93703 * 63.37811 * 5 4 2 37 37 H 0.96702 * 116.99985 * 180.02562 * 13 11 9 38 38 H 1.08999 * 111.08706 * 263.56043 * 14 9 8 39 39 H 1.09005 * 111.12263 * 139.51758 * 14 9 8 40 40 H 1.09000 * 109.47266 * 289.99417 * 18 17 15 41 41 H 1.08999 * 109.47432 * 50.00169 * 18 17 15 42 42 H 0.97003 * 119.99095 * 0.02562 * 21 19 18 43 43 H 0.96994 * 119.99798 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8852 1.0304 0.0000 4 6 2.0553 -0.6867 -1.2527 5 6 1.6887 -2.1814 -1.2474 6 6 2.2395 -2.7688 0.0362 7 1 3.3093 -2.5675 0.0904 8 8 2.0301 -4.1461 0.2837 9 6 1.9697 -4.3443 1.7138 10 1 1.0456 -4.8575 1.9802 11 6 3.1554 -5.1556 2.1690 12 8 4.0016 -5.4876 1.3731 13 8 3.2713 -5.5093 3.4586 14 6 2.0044 -2.9401 2.3777 15 6 1.5293 -2.0501 1.2168 16 1 0.4451 -2.0858 1.1105 17 7 2.0113 -0.6751 1.2212 18 6 1.5642 0.0356 2.4266 19 6 2.2748 1.3612 2.5207 20 8 3.0754 1.6821 1.6678 21 7 2.0209 2.1902 3.5526 22 6 2.6678 3.3959 3.6385 23 1 3.3806 3.6816 2.8791 24 6 2.4063 4.2503 4.7027 25 7 1.5387 3.9029 5.6264 26 14 3.2872 5.8934 4.8193 27 1 2.4938 6.9317 4.1139 28 1 3.4405 6.2726 6.2469 29 1 4.6277 5.7823 4.1901 30 1 -0.3633 0.5304 0.8802 31 1 -0.3634 0.4971 -0.8994 32 1 -0.3634 -1.0275 0.0192 33 1 3.1388 -0.5847 -1.3131 34 1 1.6034 -0.2110 -2.1230 35 1 2.1393 -2.6778 -2.1067 36 1 0.6053 -2.2986 -1.2750 37 1 4.0491 -6.0292 3.7030 38 1 3.0164 -2.6765 2.6850 39 1 1.3148 -2.8868 3.2202 40 1 0.4886 0.2032 2.3716 41 1 1.7942 -0.5633 3.3078 42 1 1.3810 1.9334 4.2348 43 1 1.3559 4.4995 6.3690 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604712090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:08 Heat of formation + Delta-G solvation = -153.064311 kcal Electronic energy + Delta-G solvation = -27334.781578 eV Core-core repulsion = 23380.424096 eV Total energy + Delta-G solvation = -3954.357482 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.32451 -40.02280 -38.41650 -37.16315 -36.19627 -34.04712 -33.64217 -31.62694 -31.23561 -30.53422 -27.99320 -26.63833 -25.00651 -24.37621 -22.48745 -21.55050 -21.25339 -19.47264 -18.90087 -18.26084 -17.82842 -16.99960 -16.58218 -16.37697 -15.91998 -15.63051 -15.50913 -14.92958 -14.58601 -14.22881 -14.10122 -13.90258 -13.51618 -13.27900 -12.98249 -12.66100 -12.46834 -12.35907 -12.19341 -12.04414 -11.72345 -11.66051 -11.57037 -11.42300 -11.35493 -11.08221 -10.78893 -10.64663 -10.45261 -10.38053 -10.24175 -10.08400 -9.72118 -9.48328 -8.48990 -8.01724 -7.93453 -6.43706 -3.84411 1.97032 2.54966 3.16189 3.25251 3.30826 3.39296 3.86683 3.90527 4.19156 4.25022 4.45274 4.74179 4.82667 4.91006 4.95396 5.00969 5.12229 5.14778 5.22904 5.23841 5.40984 5.45550 5.56576 5.60351 5.65627 5.74409 5.79692 5.85414 5.93450 5.94897 6.12222 6.17734 6.23953 6.27277 6.36790 6.55271 6.63284 7.17238 7.29181 7.53465 7.69414 8.04305 8.59669 9.16396 9.52350 10.04073 10.74039 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.017036 B = 0.003608 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.174598 B = 7759.013332 C = 8771.978433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.070 3.930 3 H 0.112 0.888 4 C -0.104 4.104 5 C -0.108 4.108 6 C 0.077 3.923 7 H 0.076 0.924 8 O -0.340 6.340 9 C 0.095 3.905 10 H 0.126 0.874 11 C 0.466 3.534 12 O -0.498 6.498 13 O -0.514 6.514 14 C -0.133 4.133 15 C 0.035 3.965 16 H 0.070 0.930 17 N -0.480 5.480 18 C 0.035 3.965 19 C 0.445 3.555 20 O -0.576 6.576 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.411 0.589 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.391 0.609 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.490 -15.405 -5.970 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.038 4.038 3 H 0.130 0.870 4 C -0.142 4.142 5 C -0.146 4.146 6 C 0.019 3.981 7 H 0.094 0.906 8 O -0.258 6.258 9 C 0.036 3.964 10 H 0.143 0.857 11 C 0.306 3.694 12 O -0.385 6.385 13 O -0.326 6.326 14 C -0.171 4.171 15 C -0.075 4.075 16 H 0.088 0.912 17 N -0.204 5.204 18 C -0.096 4.096 19 C 0.230 3.770 20 O -0.460 6.460 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.271 0.729 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.225 0.775 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.572 -15.090 -6.872 16.962 hybrid contribution -0.341 0.389 1.052 1.173 sum -3.913 -14.701 -5.820 16.288 Atomic orbital electron populations 1.22534 0.98037 1.01615 1.02709 1.21870 0.92066 1.01103 0.88766 0.86983 1.21498 1.02421 0.93101 0.97146 1.21505 1.01198 0.95855 0.96055 1.22514 1.00379 0.79382 0.95851 0.90585 1.88390 1.93104 1.25658 1.18621 1.22510 0.94448 0.96307 0.83171 0.85699 1.23876 0.87708 0.77899 0.79879 1.90737 1.41576 1.51572 1.54581 1.84511 1.50658 1.68751 1.28723 1.22882 1.04950 0.90746 0.98526 1.23206 0.98359 0.90933 0.94987 0.91209 1.62483 1.57090 0.99127 1.01746 1.22010 0.98179 0.95952 0.93424 1.19679 0.86803 0.85914 0.84601 1.90502 1.37950 1.76285 1.41305 1.41860 1.39133 1.16734 1.22380 1.19688 1.21265 0.93046 1.08790 0.87923 1.25245 0.97144 0.99994 0.95481 1.69606 1.34068 1.38072 1.12603 0.85875 0.79768 0.81444 0.77321 1.20441 1.20935 1.19404 0.92057 0.91907 0.92564 0.90538 0.90824 0.90929 0.91229 0.72943 0.88679 0.88280 0.92630 0.89364 0.77550 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.36 8.25 37.16 0.31 -2.05 16 2 C 0.07 1.03 2.50 -67.73 -0.17 0.86 16 3 H 0.11 2.07 6.08 -51.93 -0.32 1.76 16 4 C -0.10 -1.29 5.46 -26.67 -0.15 -1.44 16 5 C -0.11 -1.24 5.76 -27.01 -0.16 -1.39 16 6 C 0.08 1.00 2.91 -26.21 -0.08 0.93 16 7 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 8 O -0.34 -4.51 10.58 -54.69 -0.58 -5.09 16 9 C 0.10 1.03 4.05 -26.62 -0.11 0.92 16 10 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 11 C 0.47 5.50 7.55 36.01 0.27 5.77 16 12 O -0.50 -7.74 17.28 -25.36 -0.44 -8.18 16 13 O -0.51 -4.45 13.42 -39.25 -0.53 -4.98 16 14 C -0.13 -1.46 5.24 -25.06 -0.13 -1.59 16 15 C 0.03 0.43 1.96 -66.68 -0.13 0.30 16 16 H 0.07 0.80 5.92 -51.93 -0.31 0.49 16 17 N -0.48 -7.43 4.34 -218.99 -0.95 -8.38 16 18 C 0.04 0.59 5.16 -4.98 -0.03 0.57 16 19 C 0.44 10.03 7.49 -10.99 -0.08 9.95 16 20 O -0.58 -14.93 14.14 5.54 0.08 -14.85 16 21 N -0.56 -13.83 5.29 -10.96 -0.06 -13.89 16 22 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 23 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.09 13.05 55.50 0.72 -23.36 16 26 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 30 H 0.06 0.82 6.23 -51.93 -0.32 0.50 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.62 5.00 -51.93 -0.26 0.36 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.72 7.01 -51.93 -0.36 0.36 16 37 H 0.41 1.91 9.10 45.56 0.41 2.33 16 38 H 0.09 1.19 7.87 -51.93 -0.41 0.78 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.84 5.91 -51.93 -0.31 0.54 16 41 H 0.09 1.33 7.17 -51.93 -0.37 0.96 16 42 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 43 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 341.12 15.07 5.14 5.14 Total: -1.00 -33.28 341.12 -7.35 -40.63 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -0.69 Total: 5.05 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.28 Total: -45.63 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.47 Total: -33.11 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.28 -7.35 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604712090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.432 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds