Wall clock time and date at job start Fri Apr 10 2020 18:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.02013 * 2 1 4 4 C 1.52210 * 110.18886 * 241.26759 * 2 1 3 5 5 C 1.53899 * 110.68056 * 294.20690 * 4 2 1 6 6 C 1.51516 * 107.02757 * 304.00313 * 5 4 2 7 7 H 1.08994 * 109.10874 * 304.27606 * 6 5 4 8 8 O 1.41498 * 118.14408 * 179.87613 * 6 5 4 9 9 C 1.44505 * 108.22794 * 209.51604 * 8 6 5 10 10 H 1.09007 * 109.98955 * 125.58974 * 9 8 6 11 11 C 1.50704 * 109.87132 * 246.64547 * 9 8 6 12 12 O 1.20818 * 119.99865 * 2.87449 * 11 9 8 13 13 O 1.34226 * 119.99862 * 182.87148 * 11 9 8 14 14 C 1.55367 * 107.33660 * 6.08452 * 9 8 6 15 15 C 1.53796 * 101.16105 * 21.53072 * 14 9 8 16 16 H 1.09000 * 111.21625 * 79.70100 * 15 14 9 17 17 N 1.45704 * 116.20716 * 208.14924 * 15 14 9 18 18 C 1.46897 * 111.00021 * 298.81018 * 17 15 14 19 19 C 1.50699 * 109.47304 * 170.00027 * 18 17 15 20 20 O 1.21299 * 119.99724 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00685 * 179.97438 * 19 18 17 22 22 C 1.37093 * 120.00263 * 179.97438 * 21 19 18 23 23 H 1.07994 * 120.00084 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99503 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00442 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99574 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47205 * 89.99756 * 26 24 22 28 28 H 1.48503 * 109.46957 * 209.99459 * 26 24 22 29 29 H 1.48496 * 109.47404 * 329.99502 * 26 24 22 30 30 H 1.08998 * 109.46811 * 301.06919 * 1 2 3 31 31 H 1.08996 * 109.47521 * 61.06804 * 1 2 3 32 32 H 1.09005 * 109.47418 * 181.07169 * 1 2 3 33 33 H 1.09003 * 110.26781 * 173.34180 * 4 2 1 34 34 H 1.08992 * 108.48986 * 53.93331 * 4 2 1 35 35 H 1.08994 * 109.94598 * 184.61694 * 5 4 2 36 36 H 1.09006 * 109.93703 * 63.37811 * 5 4 2 37 37 H 0.96702 * 116.99985 * 180.02562 * 13 11 9 38 38 H 1.08999 * 111.08706 * 263.56043 * 14 9 8 39 39 H 1.09005 * 111.12263 * 139.51758 * 14 9 8 40 40 H 1.09000 * 109.47266 * 289.99417 * 18 17 15 41 41 H 1.08999 * 109.47432 * 50.00169 * 18 17 15 42 42 H 0.97003 * 119.99095 * 0.02562 * 21 19 18 43 43 H 0.96994 * 119.99798 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8852 1.0304 0.0000 4 6 2.0553 -0.6867 -1.2527 5 6 1.6887 -2.1814 -1.2474 6 6 2.2395 -2.7688 0.0362 7 1 3.3093 -2.5675 0.0904 8 8 2.0301 -4.1461 0.2837 9 6 1.9697 -4.3443 1.7138 10 1 1.0456 -4.8575 1.9802 11 6 3.1554 -5.1556 2.1690 12 8 4.0016 -5.4876 1.3731 13 8 3.2713 -5.5093 3.4586 14 6 2.0044 -2.9401 2.3777 15 6 1.5293 -2.0501 1.2168 16 1 0.4451 -2.0858 1.1105 17 7 2.0113 -0.6751 1.2212 18 6 1.5642 0.0356 2.4266 19 6 2.2748 1.3612 2.5207 20 8 3.0754 1.6821 1.6678 21 7 2.0209 2.1902 3.5526 22 6 2.6678 3.3959 3.6385 23 1 3.3806 3.6816 2.8791 24 6 2.4063 4.2503 4.7027 25 7 1.5387 3.9029 5.6264 26 14 3.2872 5.8934 4.8193 27 1 2.4938 6.9317 4.1139 28 1 3.4405 6.2726 6.2469 29 1 4.6277 5.7823 4.1901 30 1 -0.3633 0.5304 0.8802 31 1 -0.3634 0.4971 -0.8994 32 1 -0.3634 -1.0275 0.0192 33 1 3.1388 -0.5847 -1.3131 34 1 1.6034 -0.2110 -2.1230 35 1 2.1393 -2.6778 -2.1067 36 1 0.6053 -2.2986 -1.2750 37 1 4.0491 -6.0292 3.7030 38 1 3.0164 -2.6765 2.6850 39 1 1.3148 -2.8868 3.2202 40 1 0.4886 0.2032 2.3716 41 1 1.7942 -0.5633 3.3078 42 1 1.3810 1.9334 4.2348 43 1 1.3559 4.4995 6.3690 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604712090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:07 Heat of formation + Delta-G solvation = -179.146151 kcal Electronic energy + Delta-G solvation = -27335.912572 eV Core-core repulsion = 23380.424096 eV Total energy + Delta-G solvation = -3955.488475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.31346 -41.04001 -39.95488 -38.42208 -37.09201 -35.91811 -34.81699 -33.23049 -32.62666 -31.53931 -29.22192 -27.92002 -26.31796 -25.78335 -23.56040 -22.54221 -22.24672 -20.94535 -20.23384 -19.73009 -19.14491 -18.03919 -17.60814 -17.43608 -17.24080 -16.81455 -16.66401 -16.47438 -15.93113 -15.70847 -15.36972 -15.30911 -14.71205 -14.44590 -14.28642 -13.98498 -13.50526 -13.39970 -13.37124 -13.16217 -13.08365 -12.91451 -12.75620 -12.63610 -12.59631 -12.40042 -12.28672 -12.12694 -11.80202 -11.71862 -11.53236 -11.35628 -11.11304 -10.70037 -10.22288 -9.97088 -9.21638 -8.44641 -5.92480 1.07111 1.38270 1.42314 1.54365 1.76583 2.09141 2.28119 2.44555 2.81835 3.21923 3.33341 3.38978 3.53493 3.86010 3.96575 3.98014 4.02695 4.12396 4.23057 4.26306 4.30799 4.40923 4.49793 4.55433 4.57528 4.60998 4.70340 4.82733 4.89169 4.94704 5.00964 5.14290 5.16057 5.27209 5.42988 5.48982 5.52902 5.68961 5.90929 6.07773 6.21966 6.63865 6.92446 7.16231 7.60186 8.16646 8.72761 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.017036 B = 0.003608 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.174598 B = 7759.013332 C = 8771.978433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.068 3.932 3 H 0.066 0.934 4 C -0.099 4.099 5 C -0.100 4.100 6 C 0.079 3.921 7 H 0.041 0.959 8 O -0.353 6.353 9 C 0.093 3.907 10 H 0.165 0.835 11 C 0.469 3.531 12 O -0.546 6.546 13 O -0.502 6.502 14 C -0.130 4.130 15 C 0.039 3.961 16 H 0.094 0.906 17 N -0.503 5.503 18 C 0.050 3.950 19 C 0.443 3.557 20 O -0.615 6.615 21 N -0.575 5.575 22 C -0.330 4.330 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.988 3.012 27 H -0.271 1.271 28 H -0.271 1.271 29 H -0.275 1.275 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.429 0.571 38 H 0.073 0.927 39 H 0.130 0.870 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.396 0.604 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.488 -16.576 -5.461 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.040 4.040 3 H 0.084 0.916 4 C -0.137 4.137 5 C -0.138 4.138 6 C 0.021 3.979 7 H 0.059 0.941 8 O -0.271 6.271 9 C 0.034 3.966 10 H 0.182 0.818 11 C 0.312 3.688 12 O -0.436 6.436 13 O -0.316 6.316 14 C -0.168 4.168 15 C -0.070 4.070 16 H 0.112 0.888 17 N -0.228 5.228 18 C -0.081 4.081 19 C 0.231 3.769 20 O -0.501 6.501 21 N -0.213 5.213 22 C -0.460 4.460 23 H 0.095 0.905 24 C -0.210 4.210 25 N -0.561 5.561 26 Si 0.813 3.187 27 H -0.197 1.197 28 H -0.196 1.196 29 H -0.200 1.200 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.291 0.709 38 H 0.092 0.908 39 H 0.148 0.852 40 H 0.097 0.903 41 H 0.127 0.873 42 H 0.230 0.770 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.588 -16.288 -6.330 18.346 hybrid contribution 0.344 0.692 0.904 1.189 sum -5.244 -15.596 -5.425 17.325 Atomic orbital electron populations 1.22444 0.95694 1.03037 1.02816 1.21780 0.93911 0.98830 0.89437 0.91624 1.21438 1.01082 0.94278 0.96899 1.21457 1.02393 0.94395 0.95513 1.22413 0.98632 0.79768 0.97105 0.94078 1.88375 1.93026 1.25387 1.20346 1.22840 0.95529 0.96319 0.81906 0.81759 1.24163 0.87292 0.77150 0.80178 1.90727 1.43248 1.53655 1.55939 1.84471 1.51643 1.68590 1.26945 1.22916 1.04496 0.90346 0.99016 1.23259 0.99425 0.88845 0.95479 0.88830 1.62373 1.58390 1.00631 1.01399 1.21859 0.98456 0.92759 0.95032 1.20760 0.85875 0.87341 0.82963 1.90483 1.39608 1.77562 1.42427 1.41914 1.39509 1.16572 1.23265 1.19612 1.22222 0.94987 1.09157 0.90533 1.25951 0.97588 1.02740 0.94761 1.69659 1.34509 1.39127 1.12812 0.84993 0.78345 0.77647 0.77763 1.19668 1.19609 1.20014 0.93186 0.90692 0.90233 0.92872 0.88794 0.90256 0.89065 0.70877 0.90832 0.85181 0.90322 0.87284 0.77033 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.07 8.25 71.98 0.59 -3.48 16 2 C 0.07 1.99 2.50 44.52 0.11 2.10 16 3 H 0.07 2.54 6.08 -2.39 -0.01 2.52 16 4 C -0.10 -2.42 5.46 30.64 0.17 -2.25 16 5 C -0.10 -2.09 5.76 30.41 0.18 -1.92 16 6 C 0.08 1.97 2.91 30.93 0.09 2.06 16 7 H 0.04 1.30 8.12 -2.39 -0.02 1.28 16 8 O -0.35 -8.72 10.58 -130.00 -1.38 -10.10 16 9 C 0.09 1.75 4.05 30.66 0.12 1.88 16 10 H 0.17 1.82 8.14 -2.38 -0.02 1.80 16 11 C 0.47 10.39 7.55 71.24 0.54 10.93 16 12 O -0.55 -16.90 17.28 28.31 0.49 -16.41 16 13 O -0.50 -7.58 13.42 -51.38 -0.69 -8.27 16 14 C -0.13 -2.51 5.24 31.68 0.17 -2.34 16 15 C 0.04 0.88 1.96 46.23 0.09 0.97 16 16 H 0.09 1.72 5.92 -2.39 -0.01 1.70 16 17 N -0.50 -15.23 4.34 -846.74 -3.67 -18.90 16 18 C 0.05 1.61 5.16 85.56 0.44 2.05 16 19 C 0.44 20.43 7.49 87.66 0.66 21.09 16 20 O -0.61 -33.32 14.14 -3.09 -0.04 -33.37 16 21 N -0.57 -28.76 5.29 -306.98 -1.62 -30.38 16 22 C -0.33 -18.50 9.68 84.04 0.81 -17.68 16 23 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 24 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 25 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 26 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 29 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 30 H 0.05 1.23 6.23 -2.39 -0.01 1.22 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.41 5.00 -2.38 -0.01 1.40 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 1.88 8.13 -2.39 -0.02 1.86 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.55 7.01 -2.38 -0.02 1.53 16 37 H 0.43 3.18 9.10 -74.06 -0.67 2.50 16 38 H 0.07 1.76 7.87 -2.39 -0.02 1.74 16 39 H 0.13 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.08 2.21 5.91 -2.39 -0.01 2.19 16 41 H 0.11 3.07 7.17 -2.39 -0.02 3.05 16 42 H 0.40 18.70 7.90 -92.71 -0.73 17.97 16 43 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -75.24 341.12 -0.50 -75.75 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: -0.33 Total: 32.26 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 4.44 Total: 13.30 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -5.01 Total: -97.83 kcal Atomic # 8 Polarization: -66.52 SS G_CDS: -1.62 Total: -68.14 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -75.24 -0.50 -75.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604712090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.400 kcal (2) G-P(sol) polarization free energy of solvation -75.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds