Wall clock time and date at job start Fri Apr 10 2020 18:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.02247 * 2 1 4 4 C 1.52600 * 108.97546 * 241.09564 * 2 1 3 5 5 C 1.53863 * 111.22952 * 293.04093 * 4 2 1 6 6 C 1.51686 * 106.98341 * 304.81875 * 5 4 2 7 7 H 1.08995 * 109.80767 * 303.35605 * 6 5 4 8 8 O 1.42383 * 117.27218 * 177.11808 * 6 5 4 9 9 C 1.45178 * 105.18719 * 198.96614 * 8 6 5 10 10 H 1.09000 * 109.72343 * 267.44571 * 9 8 6 11 11 C 1.50695 * 110.17070 * 146.31106 * 9 8 6 12 12 O 1.20827 * 120.00065 * 357.12366 * 11 9 8 13 13 O 1.34227 * 120.00159 * 177.12019 * 11 9 8 14 14 C 1.55079 * 107.16949 * 26.74832 * 9 8 6 15 15 C 1.53146 * 103.09061 * 1.77079 * 14 9 8 16 16 H 1.08994 * 111.19918 * 90.69225 * 15 14 9 17 17 N 1.45546 * 116.30152 * 218.23850 * 15 14 9 18 18 C 1.46898 * 110.99516 * 300.72354 * 17 15 14 19 19 C 1.50707 * 109.46668 * 172.71484 * 18 17 15 20 20 O 1.21289 * 119.99887 * 353.79921 * 19 18 17 21 21 N 1.34773 * 119.99798 * 173.79837 * 19 18 17 22 22 C 1.37107 * 119.99911 * 179.72367 * 21 19 18 23 23 H 1.07998 * 119.99792 * 0.27588 * 22 21 19 24 24 C 1.38944 * 119.99988 * 180.27612 * 22 21 19 25 25 N 1.31415 * 120.00001 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 120.00220 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47406 * 90.00007 * 26 24 22 28 28 H 1.48496 * 109.47296 * 209.99972 * 26 24 22 29 29 H 1.48499 * 109.46935 * 329.99976 * 26 24 22 30 30 H 1.09003 * 109.46897 * 298.56086 * 1 2 3 31 31 H 1.09000 * 109.46873 * 58.56562 * 1 2 3 32 32 H 1.08998 * 109.46731 * 178.56579 * 1 2 3 33 33 H 1.09000 * 109.12180 * 53.48939 * 4 2 1 34 34 H 1.09002 * 109.12326 * 172.64616 * 4 2 1 35 35 H 1.09006 * 109.95572 * 64.18763 * 5 4 2 36 36 H 1.08999 * 109.94956 * 185.45005 * 5 4 2 37 37 H 0.96694 * 117.00326 * 179.97438 * 13 11 9 38 38 H 1.08995 * 110.69444 * 243.36443 * 14 9 8 39 39 H 1.09005 * 110.83183 * 120.23585 * 14 9 8 40 40 H 1.09000 * 109.47347 * 52.72047 * 18 17 15 41 41 H 1.08997 * 109.47657 * 292.71031 * 18 17 15 42 42 H 0.97003 * 120.00404 * 0.02562 * 21 19 18 43 43 H 0.96989 * 120.00520 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8853 1.0305 0.0000 4 6 2.0262 -0.6975 -1.2633 5 6 1.6765 -2.1958 -1.2464 6 6 2.2502 -2.7702 0.0349 7 1 3.3219 -2.5769 0.0790 8 8 1.9961 -4.1450 0.3047 9 6 2.2328 -4.3033 1.7283 10 1 3.2660 -4.6064 1.8980 11 6 1.2949 -5.3353 2.2994 12 8 0.4632 -5.8529 1.5922 13 8 1.3834 -5.6795 3.5938 14 6 1.9707 -2.9263 2.3918 15 6 1.5355 -2.0506 1.2133 16 1 0.4541 -2.0781 1.0799 17 7 2.0115 -0.6752 1.2215 18 6 1.5584 0.0314 2.4270 19 6 2.2132 1.3873 2.4905 20 8 3.0652 1.6878 1.6812 21 7 1.8521 2.2659 3.4465 22 6 2.4518 3.4973 3.5078 23 1 3.2104 3.7649 2.7871 24 6 2.0836 4.4010 4.4969 25 7 2.6588 5.5811 4.5559 26 14 0.7720 3.9380 5.7437 27 1 1.4115 3.2931 6.9186 28 1 0.0514 5.1604 6.1813 29 1 -0.1897 2.9922 5.1224 30 1 -0.3633 0.4913 0.9026 31 1 -0.3633 0.5360 -0.8769 32 1 -0.3633 -1.0273 -0.0257 33 1 1.5629 -0.2324 -2.1334 34 1 3.1082 -0.5848 -1.3319 35 1 0.5943 -2.3254 -1.2603 36 1 2.1225 -2.6915 -2.1086 37 1 0.7602 -6.3455 3.9146 38 1 2.8825 -2.5372 2.8449 39 1 1.1744 -2.9984 3.1328 40 1 1.8313 -0.5456 3.3106 41 1 0.4757 0.1522 2.3921 42 1 1.1709 2.0255 4.0940 43 1 2.4015 6.2121 5.2461 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604712098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:15 Heat of formation + Delta-G solvation = -144.833315 kcal Electronic energy + Delta-G solvation = -27393.002970 eV Core-core repulsion = 23439.002411 eV Total energy + Delta-G solvation = -3954.000559 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.36248 -40.15181 -38.57194 -37.25345 -36.32999 -34.10866 -33.73159 -31.74027 -31.59873 -30.59836 -28.10958 -26.74664 -25.03931 -24.27869 -22.37256 -21.81730 -21.25481 -19.61018 -19.16513 -18.30563 -18.06918 -17.17421 -16.77357 -16.14229 -16.02627 -15.65672 -15.58078 -15.07716 -14.81384 -14.36900 -14.21073 -13.81223 -13.50024 -13.38564 -12.99001 -12.81665 -12.59491 -12.55631 -12.28593 -12.10795 -11.98287 -11.82050 -11.70732 -11.63213 -11.23192 -11.20125 -10.81453 -10.74604 -10.62620 -10.46176 -10.19598 -10.00940 -9.91435 -9.55335 -8.59797 -8.21488 -8.08050 -6.33987 -3.85504 1.85469 2.35234 2.99313 3.03870 3.12576 3.45401 3.69908 3.82861 4.07299 4.20917 4.39925 4.62587 4.66765 4.80840 4.91984 4.94089 5.03917 5.10510 5.14260 5.18487 5.35951 5.38882 5.46555 5.51356 5.58370 5.64330 5.71299 5.72685 5.83797 5.88383 5.91591 6.04509 6.11540 6.14424 6.28334 6.44241 6.52868 7.05875 7.19707 7.55242 7.57619 8.11314 8.57015 8.92300 9.39400 9.79905 10.79122 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.016660 B = 0.003853 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.245759 B = 7265.603843 C = 8369.320467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.070 3.930 3 H 0.114 0.886 4 C -0.105 4.105 5 C -0.108 4.108 6 C 0.077 3.923 7 H 0.085 0.915 8 O -0.340 6.340 9 C 0.091 3.909 10 H 0.116 0.884 11 C 0.479 3.521 12 O -0.497 6.497 13 O -0.512 6.512 14 C -0.134 4.134 15 C 0.034 3.966 16 H 0.065 0.935 17 N -0.479 5.479 18 C 0.032 3.968 19 C 0.453 3.547 20 O -0.557 6.557 21 N -0.591 5.591 22 C -0.304 4.304 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.881 5.881 26 Si 0.878 3.122 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.413 0.587 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.370 0.630 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.957 -19.385 -4.019 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.038 4.038 3 H 0.132 0.868 4 C -0.143 4.143 5 C -0.146 4.146 6 C 0.019 3.981 7 H 0.103 0.897 8 O -0.258 6.258 9 C 0.032 3.968 10 H 0.133 0.867 11 C 0.319 3.681 12 O -0.383 6.383 13 O -0.325 6.325 14 C -0.172 4.172 15 C -0.076 4.076 16 H 0.083 0.917 17 N -0.204 5.204 18 C -0.099 4.099 19 C 0.239 3.761 20 O -0.439 6.439 21 N -0.231 5.231 22 C -0.433 4.433 23 H 0.138 0.862 24 C -0.161 4.161 25 N -0.521 5.521 26 Si 0.705 3.295 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.273 0.727 38 H 0.125 0.875 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.202 0.798 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.831 -18.964 -4.967 19.974 hybrid contribution -2.411 -0.553 1.618 2.956 sum -6.241 -19.517 -3.349 20.763 Atomic orbital electron populations 1.22584 0.98225 1.01678 1.02706 1.21974 0.92143 1.00940 0.88746 0.86838 1.21558 1.02607 0.93074 0.97051 1.21502 1.01380 0.95768 0.95923 1.22768 1.00147 0.79361 0.95856 0.89681 1.88913 1.90740 1.26709 1.19475 1.22506 0.97637 0.93372 0.83320 0.86690 1.23247 0.83295 0.81640 0.79870 1.90745 1.35333 1.52009 1.60201 1.84496 1.60955 1.59534 1.27504 1.22672 1.04697 0.91766 0.98089 1.23037 0.98646 0.90661 0.95276 0.91717 1.62455 1.57070 0.99256 1.01570 1.22056 0.98223 0.95699 0.93924 1.19564 0.86610 0.85603 0.84336 1.90545 1.34003 1.78078 1.41248 1.42226 1.37171 1.15101 1.28568 1.19420 1.20321 0.88458 1.15102 0.86228 1.25025 0.97917 0.95404 0.97721 1.69615 1.41947 1.06289 1.34238 0.86695 0.81838 0.78809 0.82178 1.19580 1.20185 1.19599 0.92267 0.91761 0.92531 0.90606 0.90570 0.91146 0.90786 0.72733 0.87527 0.89677 0.89046 0.92825 0.79790 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 8.25 37.16 0.31 -2.12 16 2 C 0.07 1.00 2.57 -67.51 -0.17 0.82 16 3 H 0.11 2.05 6.07 -51.93 -0.31 1.73 16 4 C -0.11 -1.24 5.41 -26.49 -0.14 -1.38 16 5 C -0.11 -1.18 5.74 -26.95 -0.15 -1.34 16 6 C 0.08 0.91 2.92 -26.08 -0.08 0.84 16 7 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 8 O -0.34 -4.35 10.76 -54.51 -0.59 -4.93 16 9 C 0.09 0.94 3.94 -26.79 -0.11 0.84 16 10 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 11 C 0.48 5.13 7.47 36.00 0.27 5.40 16 12 O -0.50 -7.10 17.30 -25.29 -0.44 -7.54 16 13 O -0.51 -3.83 13.42 -39.25 -0.53 -4.36 16 14 C -0.13 -1.38 5.34 -25.56 -0.14 -1.51 16 15 C 0.03 0.41 2.02 -67.06 -0.14 0.27 16 16 H 0.07 0.81 5.79 -51.93 -0.30 0.51 16 17 N -0.48 -7.01 4.37 -219.18 -0.96 -7.97 16 18 C 0.03 0.51 5.09 -4.97 -0.03 0.48 16 19 C 0.45 9.74 7.35 -10.98 -0.08 9.66 16 20 O -0.56 -14.07 14.23 5.55 0.08 -13.99 16 21 N -0.59 -13.54 5.09 -10.96 -0.06 -13.60 16 22 C -0.30 -8.36 10.16 -14.93 -0.15 -8.51 16 23 H 0.12 3.76 7.39 -52.49 -0.39 3.38 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -25.30 13.96 55.50 0.77 -24.53 16 26 Si 0.88 18.96 27.74 -169.99 -4.71 14.25 16 27 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 28 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 29 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 30 H 0.06 0.79 6.15 -51.93 -0.32 0.48 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.66 4.97 -51.93 -0.26 0.40 16 33 H 0.08 0.78 8.13 -51.93 -0.42 0.36 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.77 6.94 -51.93 -0.36 0.41 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.41 1.35 9.10 45.56 0.41 1.76 16 38 H 0.11 1.07 8.03 -51.93 -0.42 0.65 16 39 H 0.08 0.79 7.73 -51.93 -0.40 0.39 16 40 H 0.09 1.25 7.11 -51.93 -0.37 0.88 16 41 H 0.05 0.77 5.96 -51.93 -0.31 0.46 16 42 H 0.37 7.47 5.76 -40.82 -0.24 7.23 16 43 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 337.49 15.07 5.09 5.09 Total: -1.00 -34.13 337.49 -7.01 -41.14 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -4.96 Total: 11.96 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.70 Total: 4.48 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.24 Total: -46.09 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -1.47 Total: -30.82 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.71 Total: 14.25 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.13 -7.01 -41.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604712098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.696 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds