Wall clock time and date at job start Fri Apr 10 2020 18:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.02247 * 2 1 4 4 C 1.52600 * 108.97546 * 241.09564 * 2 1 3 5 5 C 1.53863 * 111.22952 * 293.04093 * 4 2 1 6 6 C 1.51686 * 106.98341 * 304.81875 * 5 4 2 7 7 H 1.08995 * 109.80767 * 303.35605 * 6 5 4 8 8 O 1.42383 * 117.27218 * 177.11808 * 6 5 4 9 9 C 1.45178 * 105.18719 * 198.96614 * 8 6 5 10 10 H 1.09000 * 109.72343 * 267.44571 * 9 8 6 11 11 C 1.50695 * 110.17070 * 146.31106 * 9 8 6 12 12 O 1.20827 * 120.00065 * 357.12366 * 11 9 8 13 13 O 1.34227 * 120.00159 * 177.12019 * 11 9 8 14 14 C 1.55079 * 107.16949 * 26.74832 * 9 8 6 15 15 C 1.53146 * 103.09061 * 1.77079 * 14 9 8 16 16 H 1.08994 * 111.19918 * 90.69225 * 15 14 9 17 17 N 1.45546 * 116.30152 * 218.23850 * 15 14 9 18 18 C 1.46898 * 110.99516 * 300.72354 * 17 15 14 19 19 C 1.50707 * 109.46668 * 172.71484 * 18 17 15 20 20 O 1.21289 * 119.99887 * 353.79921 * 19 18 17 21 21 N 1.34773 * 119.99798 * 173.79837 * 19 18 17 22 22 C 1.37107 * 119.99911 * 179.72367 * 21 19 18 23 23 H 1.07998 * 119.99792 * 0.27588 * 22 21 19 24 24 C 1.38944 * 119.99988 * 180.27612 * 22 21 19 25 25 N 1.31415 * 120.00001 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 120.00220 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47406 * 90.00007 * 26 24 22 28 28 H 1.48496 * 109.47296 * 209.99972 * 26 24 22 29 29 H 1.48499 * 109.46935 * 329.99976 * 26 24 22 30 30 H 1.09003 * 109.46897 * 298.56086 * 1 2 3 31 31 H 1.09000 * 109.46873 * 58.56562 * 1 2 3 32 32 H 1.08998 * 109.46731 * 178.56579 * 1 2 3 33 33 H 1.09000 * 109.12180 * 53.48939 * 4 2 1 34 34 H 1.09002 * 109.12326 * 172.64616 * 4 2 1 35 35 H 1.09006 * 109.95572 * 64.18763 * 5 4 2 36 36 H 1.08999 * 109.94956 * 185.45005 * 5 4 2 37 37 H 0.96694 * 117.00326 * 179.97438 * 13 11 9 38 38 H 1.08995 * 110.69444 * 243.36443 * 14 9 8 39 39 H 1.09005 * 110.83183 * 120.23585 * 14 9 8 40 40 H 1.09000 * 109.47347 * 52.72047 * 18 17 15 41 41 H 1.08997 * 109.47657 * 292.71031 * 18 17 15 42 42 H 0.97003 * 120.00404 * 0.02562 * 21 19 18 43 43 H 0.96989 * 120.00520 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8853 1.0305 0.0000 4 6 2.0262 -0.6975 -1.2633 5 6 1.6765 -2.1958 -1.2464 6 6 2.2502 -2.7702 0.0349 7 1 3.3219 -2.5769 0.0790 8 8 1.9961 -4.1450 0.3047 9 6 2.2328 -4.3033 1.7283 10 1 3.2660 -4.6064 1.8980 11 6 1.2949 -5.3353 2.2994 12 8 0.4632 -5.8529 1.5922 13 8 1.3834 -5.6795 3.5938 14 6 1.9707 -2.9263 2.3918 15 6 1.5355 -2.0506 1.2133 16 1 0.4541 -2.0781 1.0799 17 7 2.0115 -0.6752 1.2215 18 6 1.5584 0.0314 2.4270 19 6 2.2132 1.3873 2.4905 20 8 3.0652 1.6878 1.6812 21 7 1.8521 2.2659 3.4465 22 6 2.4518 3.4973 3.5078 23 1 3.2104 3.7649 2.7871 24 6 2.0836 4.4010 4.4969 25 7 2.6588 5.5811 4.5559 26 14 0.7720 3.9380 5.7437 27 1 1.4115 3.2931 6.9186 28 1 0.0514 5.1604 6.1813 29 1 -0.1897 2.9922 5.1224 30 1 -0.3633 0.4913 0.9026 31 1 -0.3633 0.5360 -0.8769 32 1 -0.3633 -1.0273 -0.0257 33 1 1.5629 -0.2324 -2.1334 34 1 3.1082 -0.5848 -1.3319 35 1 0.5943 -2.3254 -1.2603 36 1 2.1225 -2.6915 -2.1086 37 1 0.7602 -6.3455 3.9146 38 1 2.8825 -2.5372 2.8449 39 1 1.1744 -2.9984 3.1328 40 1 1.8313 -0.5456 3.3106 41 1 0.4757 0.1522 2.3921 42 1 1.1709 2.0255 4.0940 43 1 2.4015 6.2121 5.2461 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604712098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:14 Heat of formation + Delta-G solvation = -172.560153 kcal Electronic energy + Delta-G solvation = -27394.205296 eV Core-core repulsion = 23439.002411 eV Total energy + Delta-G solvation = -3955.202885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.28872 -41.07782 -40.07296 -38.42618 -37.09887 -35.95648 -34.85416 -33.70556 -32.61689 -31.54626 -29.32888 -27.96888 -26.20514 -25.72689 -23.43142 -22.68876 -22.15297 -21.22120 -20.55373 -19.82022 -18.99217 -18.00061 -17.90769 -17.33846 -17.04965 -16.76530 -16.74665 -16.66786 -15.93666 -15.51415 -15.31773 -15.25304 -14.83147 -14.57058 -14.41557 -14.06354 -14.00594 -13.56383 -13.42788 -13.20556 -13.08511 -12.85563 -12.75134 -12.71769 -12.60236 -12.39699 -12.09775 -11.97642 -11.78890 -11.71175 -11.52551 -11.34496 -11.16375 -10.81976 -10.30532 -10.20302 -9.26986 -8.39056 -5.99307 1.06581 1.30617 1.36110 1.44578 1.64595 1.98738 2.24038 2.47107 2.76955 3.15095 3.18781 3.38139 3.55095 3.79708 3.96404 3.98926 4.07300 4.09267 4.16601 4.18633 4.29663 4.32936 4.41142 4.51221 4.54902 4.58928 4.67833 4.76672 4.88631 4.91634 5.00541 5.08888 5.12409 5.23126 5.43594 5.51690 5.55250 5.63236 5.89909 6.00375 6.16134 6.62230 6.91488 6.93714 7.42921 8.00141 8.78620 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.016660 B = 0.003853 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.245759 B = 7265.603843 C = 8369.320467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.067 3.933 3 H 0.068 0.932 4 C -0.099 4.099 5 C -0.102 4.102 6 C 0.078 3.922 7 H 0.079 0.921 8 O -0.357 6.357 9 C 0.086 3.914 10 H 0.138 0.862 11 C 0.488 3.512 12 O -0.539 6.539 13 O -0.500 6.500 14 C -0.129 4.129 15 C 0.035 3.965 16 H 0.067 0.933 17 N -0.494 5.494 18 C 0.044 3.956 19 C 0.456 3.544 20 O -0.601 6.601 21 N -0.594 5.594 22 C -0.324 4.324 23 H 0.057 0.943 24 C -0.014 4.014 25 N -0.936 5.936 26 Si 0.961 3.039 27 H -0.256 1.256 28 H -0.277 1.277 29 H -0.233 1.233 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.433 0.567 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.122 0.878 41 H 0.078 0.922 42 H 0.388 0.612 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.181 -22.199 -2.532 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.041 4.041 3 H 0.086 0.914 4 C -0.137 4.137 5 C -0.140 4.140 6 C 0.020 3.980 7 H 0.097 0.903 8 O -0.276 6.276 9 C 0.027 3.973 10 H 0.155 0.845 11 C 0.331 3.669 12 O -0.428 6.428 13 O -0.315 6.315 14 C -0.167 4.167 15 C -0.074 4.074 16 H 0.085 0.915 17 N -0.218 5.218 18 C -0.087 4.087 19 C 0.243 3.757 20 O -0.484 6.484 21 N -0.236 5.236 22 C -0.453 4.453 23 H 0.075 0.925 24 C -0.213 4.213 25 N -0.577 5.577 26 Si 0.781 3.219 27 H -0.181 1.181 28 H -0.203 1.203 29 H -0.156 1.156 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.296 0.704 38 H 0.130 0.870 39 H 0.119 0.881 40 H 0.140 0.860 41 H 0.095 0.905 42 H 0.223 0.777 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.057 -21.821 -3.467 22.910 hybrid contribution -1.582 0.304 1.075 1.936 sum -7.639 -21.516 -2.392 22.957 Atomic orbital electron populations 1.22505 0.96566 1.02626 1.02722 1.21877 0.93470 0.98878 0.89875 0.91369 1.21491 1.01839 0.93920 0.96402 1.21456 1.01653 0.94687 0.96162 1.22742 0.99842 0.79282 0.96170 0.90296 1.88899 1.90900 1.26759 1.21036 1.22716 0.98841 0.93490 0.82210 0.84461 1.23255 0.82336 0.81015 0.80328 1.90739 1.37047 1.53646 1.61378 1.84454 1.61383 1.59973 1.25686 1.22686 1.05428 0.91031 0.97581 1.23053 0.98701 0.89047 0.96589 0.91490 1.62386 1.57875 1.00458 1.01107 1.21982 0.98800 0.92152 0.95798 1.20727 0.85336 0.87176 0.82426 1.90537 1.35885 1.79400 1.42579 1.42051 1.37829 1.13881 1.29814 1.18985 1.20371 0.91136 1.14800 0.92508 1.26055 1.00641 0.94668 0.99886 1.69799 1.44222 1.07983 1.35655 0.85416 0.78461 0.79285 0.78693 1.18065 1.20255 1.15630 0.93077 0.90936 0.90998 0.89110 0.91865 0.90687 0.89587 0.70432 0.87044 0.88139 0.86031 0.90455 0.77700 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.33 8.25 71.98 0.59 -3.74 16 2 C 0.07 1.89 2.57 44.64 0.11 2.00 16 3 H 0.07 2.57 6.07 -2.39 -0.01 2.55 16 4 C -0.10 -2.26 5.41 30.75 0.17 -2.09 16 5 C -0.10 -2.05 5.74 30.45 0.17 -1.87 16 6 C 0.08 1.70 2.92 31.01 0.09 1.79 16 7 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 8 O -0.36 -8.36 10.76 -130.55 -1.40 -9.76 16 9 C 0.09 1.54 3.94 30.56 0.12 1.66 16 10 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 11 C 0.49 9.10 7.47 71.23 0.53 9.63 16 12 O -0.54 -14.35 17.30 28.21 0.49 -13.86 16 13 O -0.50 -5.74 13.42 -51.39 -0.69 -6.43 16 14 C -0.13 -2.21 5.34 31.36 0.17 -2.05 16 15 C 0.04 0.77 2.02 46.07 0.09 0.86 16 16 H 0.07 1.46 5.79 -2.39 -0.01 1.44 16 17 N -0.49 -13.72 4.37 -847.37 -3.71 -17.42 16 18 C 0.04 1.27 5.09 85.56 0.44 1.70 16 19 C 0.46 19.64 7.35 87.66 0.64 20.29 16 20 O -0.60 -31.71 14.23 -3.06 -0.04 -31.76 16 21 N -0.59 -27.08 5.09 -306.98 -1.56 -28.64 16 22 C -0.32 -18.53 10.16 84.04 0.85 -17.67 16 23 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 24 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 25 N -0.94 -55.79 13.96 21.66 0.30 -55.49 16 26 Si 0.96 38.05 27.74 68.60 1.90 39.95 16 27 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 28 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 29 H -0.23 -7.74 6.52 99.48 0.65 -7.09 16 30 H 0.05 1.26 6.15 -2.39 -0.01 1.25 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 1.46 4.97 -2.39 -0.01 1.45 16 33 H 0.09 1.77 8.13 -2.39 -0.02 1.75 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.46 6.94 -2.38 -0.02 1.44 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.43 1.35 9.10 -74.06 -0.67 0.67 16 38 H 0.11 1.84 8.03 -2.39 -0.02 1.82 16 39 H 0.10 1.43 7.73 -2.38 -0.02 1.41 16 40 H 0.12 2.86 7.11 -2.39 -0.02 2.84 16 41 H 0.08 1.95 5.96 -2.39 -0.01 1.93 16 42 H 0.39 14.67 5.76 -92.71 -0.53 14.13 16 43 H 0.28 15.19 8.31 -92.72 -0.77 14.42 16 Total: -1.00 -79.80 337.49 -0.45 -80.26 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: -0.19 Total: 32.94 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 4.45 Total: 10.22 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -4.97 Total: -101.56 kcal Atomic # 8 Polarization: -60.16 SS G_CDS: -1.65 Total: -61.81 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 1.90 Total: 39.95 kcal Total: -79.80 -0.45 -80.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604712098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.303 kcal (2) G-P(sol) polarization free energy of solvation -79.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds