Wall clock time and date at job start Fri Apr 10 2020 18:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00234 * 2 1 4 4 H 1.48506 * 109.47084 * 270.00135 * 3 2 1 5 5 H 1.48503 * 109.47037 * 29.99713 * 3 2 1 6 6 H 1.48497 * 109.47401 * 150.00015 * 3 2 1 7 7 C 1.38815 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99910 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00228 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00168 * 174.06616 * 9 7 2 11 11 C 1.52995 * 109.54543 * 300.59089 * 10 9 7 12 12 N 1.46501 * 109.47305 * 305.05788 * 11 10 9 13 13 C 1.34771 * 120.00192 * 175.90597 * 12 11 10 14 14 O 1.21283 * 120.00034 * 359.97438 * 13 12 11 15 15 C 1.50707 * 120.00102 * 179.97438 * 13 12 11 16 16 H 1.09001 * 110.60044 * 317.22450 * 15 13 12 17 17 C 1.54108 * 110.54838 * 79.99573 * 15 13 12 18 18 N 1.47049 * 103.86303 * 118.59524 * 17 15 13 19 19 C 1.33951 * 109.17755 * 0.02562 * 18 17 15 20 20 O 1.21585 * 123.03928 * 180.02562 * 19 18 17 21 21 N 1.33943 * 113.91772 * 359.97438 * 19 18 17 22 22 C 1.53184 * 109.61818 * 60.81259 * 10 9 7 23 23 C 1.53100 * 109.16065 * 62.92891 * 22 10 9 24 24 O 1.42896 * 109.41370 * 57.61110 * 23 22 10 25 25 C 1.42906 * 114.09959 * 298.84231 * 24 23 22 26 26 C 1.53089 * 109.41554 * 61.15696 * 25 24 23 27 27 H 0.97003 * 119.99417 * 0.02562 * 1 2 3 28 28 H 0.97004 * 119.99740 * 354.06911 * 9 7 2 29 29 H 1.09001 * 109.47370 * 185.05829 * 11 10 9 30 30 H 1.09000 * 109.47335 * 65.05771 * 11 10 9 31 31 H 0.97006 * 119.99589 * 355.90077 * 12 11 10 32 32 H 1.09005 * 110.54744 * 0.02562 * 17 15 13 33 33 H 1.09005 * 110.66894 * 237.25167 * 17 15 13 34 34 H 0.96993 * 125.41443 * 179.73201 * 18 17 15 35 35 H 0.97001 * 125.41329 * 180.02562 * 21 19 18 36 36 H 1.08992 * 109.52518 * 182.83534 * 22 10 9 37 37 H 1.08995 * 109.51826 * 303.02997 * 22 10 9 38 38 H 1.09002 * 109.48028 * 297.62710 * 23 22 10 39 39 H 1.08998 * 109.47653 * 177.59298 * 23 22 10 40 40 H 1.09004 * 109.47970 * 301.17570 * 25 24 23 41 41 H 1.09009 * 109.48788 * 181.14840 * 25 24 23 42 42 H 1.09004 * 109.52188 * 182.48547 * 26 25 24 43 43 H 1.09002 * 109.56989 * 62.33167 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0520 -3.6534 -0.1323 11 6 2.8280 -3.6632 -1.4508 12 7 1.9087 -3.3990 -2.5605 13 6 2.3846 -3.2779 -3.8155 14 8 3.5739 -3.3871 -4.0263 15 6 1.4388 -3.0068 -4.9571 16 1 0.5418 -3.6193 -4.8658 17 6 1.0696 -1.5115 -5.0102 18 7 1.5642 -1.0728 -6.3236 19 6 2.1289 -2.1129 -6.9510 20 8 2.6223 -2.0303 -8.0591 21 7 2.1019 -3.2518 -6.2466 22 6 3.0281 -3.8102 1.0379 23 6 2.2368 -3.8784 2.3467 24 8 1.3101 -4.9645 2.2854 25 6 0.3433 -4.8483 1.2395 26 6 1.0585 -4.8190 -0.1137 27 1 -0.4849 0.8401 -0.0004 28 1 0.3594 -2.3903 0.0866 29 1 3.2952 -4.6381 -1.5902 30 1 3.5977 -2.8918 -1.4252 31 1 0.9575 -3.3114 -2.3918 32 1 1.5706 -0.9651 -4.2110 33 1 -0.0104 -1.3793 -4.9443 34 1 1.4893 -0.1742 -6.6810 35 1 2.4625 -4.1031 -6.5402 36 1 3.6035 -4.7273 0.9119 37 1 3.7042 -2.9557 1.0652 38 1 1.6934 -2.9447 2.4920 39 1 2.9234 -4.0329 3.1790 40 1 -0.2249 -3.9273 1.3703 41 1 -0.3343 -5.7015 1.2742 42 1 0.3261 -4.6861 -0.9100 43 1 1.5940 -5.7565 -0.2640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671945992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:37 Heat of formation + Delta-G solvation = -83.274282 kcal Electronic energy + Delta-G solvation = -27552.823507 eV Core-core repulsion = 23633.785099 eV Total energy + Delta-G solvation = -3919.038408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22787 -39.64506 -38.66672 -36.23820 -35.81762 -33.62489 -32.98245 -32.32760 -30.75267 -29.46975 -29.26302 -26.73719 -24.24521 -23.86213 -23.09067 -22.03760 -21.74770 -20.23464 -18.79623 -17.98143 -17.51489 -17.24982 -16.33744 -15.80241 -15.76996 -15.61274 -15.39418 -14.81474 -14.77871 -14.42049 -14.19627 -13.96116 -13.81572 -13.65539 -13.37002 -12.90701 -12.81320 -12.51827 -12.19990 -12.02626 -11.82431 -11.51483 -11.01887 -10.99633 -10.90040 -10.44143 -10.31123 -10.16521 -10.02470 -9.90799 -9.81243 -9.38607 -9.22534 -8.96909 -8.79847 -8.64099 -7.21550 -5.98080 -3.28633 2.61974 2.82078 3.12231 3.29785 3.37417 3.38978 3.44654 4.03768 4.27993 4.30406 4.41233 4.79217 4.80552 5.07451 5.13762 5.22972 5.33511 5.42892 5.44686 5.49194 5.53742 5.66661 5.68008 5.89372 5.97252 6.01147 6.10135 6.19385 6.29387 6.43871 6.45516 6.61425 6.67445 6.83267 6.96165 7.13728 7.34994 7.54706 7.61716 7.81273 8.18946 8.44005 8.62954 9.32342 9.81665 10.18699 11.23185 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.005068 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.076122 B = 5523.814465 C = 7070.530955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.004 4.004 3 Si 0.899 3.101 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.712 5.712 10 C 0.189 3.811 11 C 0.119 3.881 12 N -0.692 5.692 13 C 0.499 3.501 14 O -0.538 6.538 15 C 0.105 3.895 16 H 0.113 0.887 17 C 0.103 3.897 18 N -0.738 5.738 19 C 0.706 3.294 20 O -0.593 6.593 21 N -0.714 5.714 22 C -0.155 4.155 23 C 0.070 3.930 24 O -0.393 6.393 25 C 0.066 3.934 26 C -0.151 4.151 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.403 0.597 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.431 0.569 35 H 0.432 0.568 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 -8.435 -2.563 9.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.731 3.269 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.354 5.354 10 C 0.097 3.903 11 C -0.007 4.007 12 N -0.342 5.342 13 C 0.281 3.719 14 O -0.415 6.415 15 C -0.006 4.006 16 H 0.131 0.869 17 C -0.023 4.023 18 N -0.400 5.400 19 C 0.405 3.595 20 O -0.471 6.471 21 N -0.376 5.376 22 C -0.195 4.195 23 C -0.006 4.006 24 O -0.312 6.312 25 C -0.011 4.011 26 C -0.189 4.189 27 H 0.066 0.934 28 H 0.220 0.780 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.239 0.761 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.273 0.727 35 H 0.274 0.726 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.446 -8.469 -3.120 9.141 hybrid contribution -0.132 1.401 -0.126 1.413 sum -1.577 -7.068 -3.247 7.936 Atomic orbital electron populations 1.69638 1.04928 1.25797 1.57258 1.24659 0.95386 0.97408 1.02558 0.86321 0.78871 0.84153 0.77597 1.21758 1.21826 1.20798 1.19047 0.90969 0.83619 1.43067 0.91271 1.42468 1.06178 0.99409 1.87341 1.19836 0.91586 0.87381 0.91515 1.21826 0.92739 0.99716 0.86384 1.45683 1.11966 1.70635 1.05930 1.20556 0.89268 0.77872 0.84191 1.90718 1.16127 1.50359 1.84287 1.21837 0.95815 0.98162 0.84750 0.86919 1.22312 1.01464 0.91484 0.87001 1.45059 1.63856 1.12268 1.18863 1.15850 0.78598 0.81233 0.83805 1.90973 1.52451 1.84398 1.19288 1.44777 1.64269 1.12027 1.16539 1.22486 0.99067 1.01460 0.96506 1.22448 0.91301 0.90364 0.96530 1.87810 1.44624 1.46249 1.52496 1.22464 0.90621 1.01642 0.86395 1.22362 0.99448 0.98726 0.98414 0.93444 0.78017 0.92947 0.91219 0.76114 0.88614 0.88519 0.72701 0.72636 0.92536 0.90517 0.91441 0.90321 0.92290 0.89992 0.91215 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -23.84 13.07 55.49 0.73 -23.12 16 2 C 0.00 -0.09 5.50 -17.43 -0.10 -0.18 16 3 Si 0.90 20.44 29.55 -169.99 -5.02 15.42 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.24 -5.37 8.70 -15.06 -0.13 -5.50 16 8 H 0.07 1.62 6.76 -52.49 -0.35 1.27 16 9 N -0.71 -13.59 3.77 -47.07 -0.18 -13.77 16 10 C 0.19 2.95 0.41 -131.64 -0.05 2.90 16 11 C 0.12 1.89 4.32 -4.04 -0.02 1.88 16 12 N -0.69 -9.87 5.16 -60.29 -0.31 -10.18 16 13 C 0.50 7.45 6.95 -10.98 -0.08 7.38 16 14 O -0.54 -10.27 16.56 5.56 0.09 -10.18 16 15 C 0.10 1.21 4.17 -68.20 -0.28 0.93 16 16 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 17 C 0.10 1.19 7.70 -3.16 -0.02 1.17 16 18 N -0.74 -9.38 6.37 -64.70 -0.41 -9.79 16 19 C 0.71 11.00 8.92 -88.40 -0.79 10.21 16 20 O -0.59 -11.45 18.05 5.29 0.10 -11.35 16 21 N -0.71 -9.39 5.60 -59.33 -0.33 -9.72 16 22 C -0.15 -2.42 4.82 -26.58 -0.13 -2.54 16 23 C 0.07 1.10 6.68 37.21 0.25 1.35 16 24 O -0.39 -6.21 10.77 -35.23 -0.38 -6.58 16 25 C 0.07 0.91 6.67 37.20 0.25 1.16 16 26 C -0.15 -1.98 4.80 -26.59 -0.13 -2.11 16 27 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 28 H 0.38 7.93 6.73 -40.82 -0.27 7.65 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.31 7.55 -51.93 -0.39 0.92 16 31 H 0.40 5.26 7.31 -40.82 -0.30 4.96 16 32 H 0.10 1.31 7.72 -51.93 -0.40 0.91 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.43 4.70 8.96 -40.82 -0.37 4.33 16 35 H 0.43 5.16 8.96 -40.82 -0.37 4.79 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.30 7.13 -51.93 -0.37 0.93 16 38 H 0.07 1.23 7.75 -51.93 -0.40 0.82 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 0.91 7.09 -51.93 -0.37 0.54 16 41 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 42 H 0.07 0.82 7.21 -51.93 -0.37 0.45 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 348.34 15.07 5.25 5.25 Total: -1.00 -31.24 348.34 -7.77 -39.00 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -6.06 Total: 18.41 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: -1.23 Total: 16.63 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -0.51 Total: -66.59 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.19 Total: -28.12 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.24 -7.77 -39.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671945992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.269 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds