Wall clock time and date at job start Fri Apr 10 2020 18:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.46947 * 2 1 4 4 N 1.46902 * 109.46794 * 119.99556 * 2 1 3 5 5 C 1.46902 * 111.00189 * 275.00180 * 4 2 1 6 6 C 1.50696 * 109.47080 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00117 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99827 * 179.97438 * 6 5 4 9 9 C 1.37102 * 120.00235 * 179.97438 * 8 6 5 10 10 H 1.08003 * 119.99637 * 0.02562 * 9 8 6 11 11 C 1.38941 * 120.00116 * 180.02562 * 9 8 6 12 12 N 1.31404 * 120.00343 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99897 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47166 * 60.00257 * 13 11 9 15 15 H 1.48501 * 109.47521 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47174 * 300.00376 * 13 11 9 17 17 C 1.52999 * 109.47249 * 239.99629 * 2 1 3 18 18 H 1.08997 * 110.88592 * 306.07301 * 17 2 1 19 19 C 1.55155 * 111.00343 * 182.18845 * 17 2 1 20 20 C 1.54319 * 102.94357 * 206.42408 * 19 17 2 21 21 N 1.47021 * 107.27006 * 22.19299 * 20 19 17 22 22 C 1.34784 * 125.64874 * 181.10940 * 21 20 19 23 23 O 1.21345 * 119.99944 * 179.97438 * 22 21 20 24 24 C 1.49449 * 119.99753 * 359.96910 * 22 21 20 25 25 N 1.34771 * 119.99620 * 180.02562 * 24 22 21 26 26 O 1.21345 * 120.00302 * 0.02562 * 24 22 21 27 27 C 1.47423 * 108.70468 * 1.05732 * 21 20 19 28 28 H 1.08997 * 109.46934 * 175.17024 * 1 2 3 29 29 H 1.08997 * 109.47176 * 295.17890 * 1 2 3 30 30 H 1.08998 * 109.46551 * 55.17504 * 1 2 3 31 31 H 1.00902 * 110.99756 * 38.95799 * 4 2 1 32 32 H 1.09001 * 109.46746 * 300.00325 * 5 4 2 33 33 H 1.08995 * 109.47151 * 59.99904 * 5 4 2 34 34 H 0.96996 * 120.00055 * 0.02562 * 8 6 5 35 35 H 0.97005 * 120.00363 * 179.97438 * 12 11 9 36 36 H 1.08996 * 110.72127 * 324.78773 * 19 17 2 37 37 H 1.09001 * 110.71860 * 87.88358 * 19 17 2 38 38 H 1.09000 * 109.88680 * 141.61247 * 20 19 17 39 39 H 1.09005 * 109.88217 * 262.78127 * 20 19 17 40 40 H 0.97001 * 120.00661 * 0.02562 * 25 24 22 41 41 H 0.97004 * 120.00364 * 180.02562 * 25 24 22 42 42 H 1.08993 * 110.36943 * 217.03186 * 27 21 20 43 43 H 1.09003 * 110.36503 * 94.70720 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2227 2.3470 6 6 2.5884 -0.5213 3.5558 7 8 2.8695 -1.6981 3.4699 8 7 2.7294 0.1211 4.7322 9 6 3.1892 -0.5559 5.8322 10 1 3.4388 -1.6039 5.7558 11 6 3.3341 0.1062 7.0450 12 7 3.0300 1.3812 7.1380 13 14 3.9613 -0.8160 8.5435 14 1 5.3176 -1.3519 8.2631 15 1 4.0242 0.1089 9.7036 16 1 3.0403 -1.9384 8.8553 17 6 2.0401 -0.7213 -1.2492 18 1 1.6043 -1.7173 -1.3279 19 6 3.5901 -0.7901 -1.2577 20 6 3.9239 -0.8793 -2.7617 21 7 2.7738 -0.3334 -3.4971 22 6 2.6649 -0.2538 -4.8382 23 8 1.6649 0.2172 -5.3388 24 6 3.7759 -0.7454 -5.7086 25 7 3.6672 -0.6652 -7.0495 26 8 4.7757 -1.2167 -5.2079 27 6 1.7587 0.1112 -2.5248 28 1 -0.3633 -1.0240 -0.0865 29 1 -0.3633 0.4372 0.9300 30 1 -0.3632 0.5869 -0.8436 31 1 1.4495 -1.4979 1.4101 32 1 2.7588 1.0463 2.1182 33 1 1.0871 0.6164 2.5525 34 1 2.5049 1.0622 4.8008 35 1 3.1308 1.8434 7.9849 36 1 4.0186 0.1116 -0.8204 37 1 3.9397 -1.6770 -0.7291 38 1 4.8157 -0.2915 -2.9791 39 1 4.0849 -1.9195 -3.0447 40 1 2.8682 -0.2881 -7.4498 41 1 4.3881 -0.9847 -7.6145 42 1 0.7569 -0.0969 -2.9003 43 1 1.8733 1.1749 -2.3165 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672228402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:51 Heat of formation + Delta-G solvation = -104.357160 kcal Electronic energy + Delta-G solvation = -25568.684132 eV Core-core repulsion = 21648.731501 eV Total energy + Delta-G solvation = -3919.952630 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.00845 -39.25221 -38.41811 -37.90902 -36.07572 -34.09634 -33.88767 -32.04050 -31.19968 -30.36159 -28.50933 -26.49643 -25.80584 -24.12020 -22.83683 -21.99446 -20.42734 -20.11668 -19.20290 -18.34784 -17.88312 -17.42312 -16.67416 -16.62259 -15.98672 -15.54854 -15.21934 -14.84568 -14.72973 -14.52185 -14.04899 -13.89771 -13.70139 -13.56803 -13.26363 -13.20236 -12.75611 -12.68506 -12.25420 -12.15186 -11.90119 -11.57970 -11.54443 -11.26860 -11.05384 -10.98277 -10.81394 -10.66489 -10.44434 -10.28327 -10.21444 -9.92979 -9.50125 -9.02376 -8.47020 -8.05368 -7.95917 -6.41826 -3.82718 1.10330 2.08514 2.88786 3.20098 3.25838 3.30172 3.35781 3.90609 3.97598 4.15567 4.24326 4.46683 4.57778 4.80734 5.05700 5.11817 5.16548 5.21038 5.21740 5.25731 5.35664 5.50617 5.63791 5.69282 5.75024 5.77234 5.82579 5.88032 6.01052 6.09427 6.11295 6.20278 6.25891 6.29778 6.56389 6.98434 7.21099 7.37212 7.54831 7.65238 7.67754 8.06003 8.61069 9.17723 9.54251 10.05662 10.75786 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.031912 B = 0.002199 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.205002 B =12731.849650 C =13243.817061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.095 3.905 3 H 0.081 0.919 4 N -0.660 5.660 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.583 6.583 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.102 0.898 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.931 3.069 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.274 1.274 17 C -0.087 4.087 18 H 0.086 0.914 19 C -0.113 4.113 20 C 0.101 3.899 21 N -0.585 5.585 22 C 0.516 3.484 23 O -0.529 6.529 24 C 0.515 3.485 25 N -0.825 5.825 26 O -0.514 6.514 27 C 0.109 3.891 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.351 0.649 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.392 0.608 35 H 0.272 0.728 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.413 0.587 41 H 0.411 0.589 42 H 0.082 0.918 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.775 0.617 -24.065 24.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.016 4.016 3 H 0.099 0.901 4 N -0.292 5.292 5 C -0.081 4.081 6 C 0.226 3.774 7 O -0.467 6.467 8 N -0.201 5.201 9 C -0.429 4.429 10 H 0.120 0.880 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.107 4.107 18 H 0.105 0.895 19 C -0.151 4.151 20 C -0.021 4.021 21 N -0.318 5.318 22 C 0.299 3.701 23 O -0.406 6.406 24 C 0.293 3.707 25 N -0.391 5.391 26 O -0.388 6.388 27 C -0.013 4.013 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.170 0.830 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.225 0.775 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.244 0.756 41 H 0.243 0.757 42 H 0.101 0.899 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.857 0.012 -23.936 24.008 hybrid contribution -0.858 0.421 0.597 1.127 sum -2.715 0.433 -23.339 23.500 Atomic orbital electron populations 1.22579 0.97236 1.02430 1.02345 1.21477 0.92364 0.97768 0.90040 0.90131 1.60107 1.57613 1.09110 1.02364 1.21690 0.99886 0.95687 0.90860 1.19816 0.85162 0.88237 0.84180 1.90524 1.55306 1.16294 1.84617 1.41863 1.57774 1.12453 1.07977 1.19647 1.40067 0.96417 0.86778 0.87983 1.25258 0.97660 0.95781 0.99262 1.69600 1.48630 1.08853 1.27262 0.85918 0.79467 0.78806 0.80027 1.19872 1.21005 1.19940 1.22338 0.96713 0.99408 0.92240 0.89534 1.22598 0.94851 1.04723 0.92963 1.22395 0.87886 0.99940 0.91902 1.48336 1.20478 1.58848 1.04143 1.19702 0.87505 0.80752 0.82141 1.90764 1.31150 1.45298 1.73381 1.20056 0.87324 0.79376 0.83920 1.43511 1.24556 1.64825 1.06221 1.90832 1.30807 1.43215 1.73965 1.22449 0.92076 0.99029 0.87733 0.92191 0.92246 0.92117 0.82953 0.89665 0.93866 0.77484 0.91830 0.90272 0.88699 0.90460 0.90348 0.75644 0.75699 0.89946 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 9.00 37.16 0.33 -1.45 16 2 C 0.09 1.01 2.13 -67.71 -0.14 0.86 16 3 H 0.08 0.84 7.68 -51.93 -0.40 0.44 16 4 N -0.66 -9.56 5.47 -107.99 -0.59 -10.15 16 5 C 0.05 0.85 5.96 -4.98 -0.03 0.82 16 6 C 0.44 10.08 7.82 -10.99 -0.09 10.00 16 7 O -0.58 -15.43 15.78 5.55 0.09 -15.34 16 8 N -0.56 -14.06 5.29 -10.97 -0.06 -14.11 16 9 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 10 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.37 13.05 55.49 0.72 -23.64 16 13 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 C -0.09 -0.86 2.75 -88.47 -0.24 -1.10 16 18 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 19 C -0.11 -1.19 6.04 -24.90 -0.15 -1.34 16 20 C 0.10 1.03 5.49 -3.07 -0.02 1.02 16 21 N -0.58 -6.19 3.33 -171.03 -0.57 -6.76 16 22 C 0.52 5.71 7.91 -11.58 -0.09 5.62 16 23 O -0.53 -6.67 16.73 5.50 0.09 -6.58 16 24 C 0.51 5.00 8.13 -11.59 -0.09 4.91 16 25 N -0.82 -4.77 8.87 30.90 0.27 -4.50 16 26 O -0.51 -6.18 14.96 5.50 0.08 -6.10 16 27 C 0.11 1.04 5.81 -2.53 -0.01 1.03 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.61 7.36 -51.93 -0.38 0.23 16 30 H 0.06 0.50 7.78 -51.93 -0.40 0.09 16 31 H 0.35 5.39 8.18 -39.29 -0.32 5.07 16 32 H 0.09 1.30 8.06 -51.93 -0.42 0.88 16 33 H 0.04 0.65 7.36 -51.93 -0.38 0.27 16 34 H 0.39 9.34 7.90 -40.82 -0.32 9.01 16 35 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 0.81 7.70 -51.93 -0.40 0.41 16 39 H 0.08 0.83 7.58 -51.93 -0.39 0.44 16 40 H 0.41 1.84 8.30 -40.82 -0.34 1.50 16 41 H 0.41 1.52 8.93 -40.82 -0.36 1.16 16 42 H 0.08 0.78 8.04 -51.93 -0.42 0.37 16 43 H 0.08 0.69 7.95 -51.93 -0.41 0.27 16 LS Contribution 361.31 15.07 5.44 5.44 Total: -1.00 -33.14 361.31 -6.47 -39.61 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -6.15 Total: 13.76 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: -0.78 Total: 12.44 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.22 Total: -59.16 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: 0.26 Total: -28.02 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.14 -6.47 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672228402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.750 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds