Wall clock time and date at job start Fri Apr 10 2020 18:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 O 1.42908 * 109.45576 * 65.00226 * 11 10 9 13 13 C 1.53039 * 109.46183 * 305.03316 * 11 10 9 14 14 C 1.53192 * 109.31539 * 178.59463 * 13 11 10 15 15 N 1.46925 * 108.76272 * 54.65521 * 14 13 11 16 16 C 1.34775 * 120.63256 * 126.36473 * 15 14 13 17 17 O 1.21280 * 120.00105 * 180.02562 * 16 15 14 18 18 C 1.50695 * 119.99869 * 0.02562 * 16 15 14 19 19 H 1.09001 * 110.49030 * 40.70272 * 18 16 15 20 20 C 1.54100 * 110.55321 * 278.00313 * 18 16 15 21 21 N 1.47052 * 103.86583 * 241.40401 * 20 18 16 22 22 C 1.33945 * 109.18006 * 0.02562 * 21 20 18 23 23 O 1.21585 * 123.04778 * 180.02562 * 22 21 20 24 24 N 1.34267 * 113.95909 * 359.91275 * 22 21 20 25 25 C 1.46927 * 118.73866 * 306.38263 * 15 14 13 26 26 C 1.53033 * 109.46416 * 184.97215 * 11 10 9 27 27 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 30 30 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 31 31 H 0.96699 * 113.99870 * 300.00318 * 12 11 10 32 32 H 1.09000 * 109.49553 * 298.56036 * 13 11 10 33 33 H 1.09003 * 109.50039 * 58.65516 * 13 11 10 34 34 H 1.09000 * 109.60115 * 294.86812 * 14 13 11 35 35 H 1.08998 * 109.70466 * 174.50682 * 14 13 11 36 36 H 1.09007 * 110.54678 * 0.02562 * 20 18 16 37 37 H 1.09001 * 110.55221 * 122.80819 * 20 18 16 38 38 H 0.97000 * 125.40966 * 179.97438 * 21 20 18 39 39 H 0.96995 * 125.58007 * 180.02562 * 24 22 21 40 40 H 1.08999 * 109.58781 * 293.82517 * 25 15 14 41 41 H 1.09001 * 109.70557 * 173.46796 * 25 15 14 42 42 H 1.08995 * 109.50142 * 301.34303 * 26 11 10 43 43 H 1.09005 * 109.49736 * 61.40767 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 8 0.3215 -4.8118 -1.2198 13 6 0.1036 -4.6688 1.1830 14 6 -0.9120 -5.8155 1.1602 15 7 -0.1837 -7.0913 1.1339 16 6 -0.4401 -8.0473 2.0487 17 8 0.1683 -9.0960 2.0166 18 6 -1.4825 -7.8132 3.1114 19 1 -2.3513 -7.3084 2.6889 20 6 -0.8936 -6.9932 4.2756 21 7 -1.0165 -7.8891 5.4352 22 6 -1.5768 -9.0411 5.0439 23 8 -1.7965 -9.9637 5.8047 24 7 -1.8766 -9.0849 3.7358 25 6 0.8296 -7.3049 0.0917 26 6 1.8254 -6.1413 0.1262 27 1 -0.4850 0.8401 0.0004 28 1 0.3557 -2.3880 0.0005 29 1 2.6849 -3.7145 -0.8894 30 1 2.6848 -3.7144 0.8905 31 1 -0.1865 -4.0021 -1.3659 32 1 0.6667 -4.6998 2.1157 33 1 -0.4214 -3.7166 1.1060 34 1 -1.5368 -5.7330 0.2709 35 1 -1.5376 -5.7702 2.0517 36 1 0.1529 -6.7550 4.0848 37 1 -1.4714 -6.0824 4.4329 38 1 -0.7356 -7.6795 6.3397 39 1 -2.2858 -9.8342 3.2754 40 1 0.3469 -7.3438 -0.8848 41 1 1.3555 -8.2416 0.2769 42 1 2.5262 -6.2374 -0.7030 43 1 2.3727 -6.1581 1.0688 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674091292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:06 Heat of formation + Delta-G solvation = -109.748040 kcal Electronic energy + Delta-G solvation = -27042.274399 eV Core-core repulsion = 23122.088003 eV Total energy + Delta-G solvation = -3920.186396 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.46861 -41.04943 -39.60901 -37.40742 -36.81347 -35.75222 -34.05354 -33.48780 -32.70016 -31.74048 -30.21773 -28.15621 -25.85146 -24.71281 -24.43927 -23.14267 -22.84167 -21.53685 -20.19708 -19.42428 -18.94099 -18.69067 -17.42343 -17.30660 -17.02255 -16.71542 -16.52727 -16.15859 -15.82187 -15.63637 -15.43774 -15.03868 -15.02101 -14.87293 -14.60028 -14.31547 -14.14930 -13.87570 -13.56981 -13.22781 -13.10379 -12.93258 -12.76482 -12.66847 -12.23261 -12.18089 -12.04272 -11.93565 -11.59709 -11.33975 -11.25245 -10.93811 -10.73664 -10.52285 -9.84889 -9.66966 -8.97496 -7.94140 -5.21018 1.34657 1.50282 1.51772 1.58818 1.62308 1.91007 2.10740 2.57400 2.98201 3.25443 3.28488 3.32580 3.44859 3.69773 3.78810 3.90395 3.97652 4.08635 4.26709 4.28823 4.40495 4.45893 4.58192 4.62556 4.68174 4.79067 4.81873 4.87067 4.96118 5.03804 5.13541 5.26008 5.38219 5.51358 5.53869 5.89073 6.18385 6.23609 6.28872 6.36639 6.81947 7.01592 7.37627 7.49612 8.08409 8.34741 9.28110 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.003142 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.515035 B = 8910.279845 C = 9717.591210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.063 4.063 3 Si 0.963 3.037 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.296 1.296 7 C -0.246 4.246 8 H 0.067 0.933 9 N -0.734 5.734 10 C 0.127 3.873 11 C 0.137 3.863 12 O -0.564 6.564 13 C -0.152 4.152 14 C 0.111 3.889 15 N -0.594 5.594 16 C 0.503 3.497 17 O -0.573 6.573 18 C 0.104 3.896 19 H 0.157 0.843 20 C 0.101 3.899 21 N -0.728 5.728 22 C 0.696 3.304 23 O -0.637 6.637 24 N -0.714 5.714 25 C 0.123 3.877 26 C -0.111 4.111 27 H 0.252 0.748 28 H 0.380 0.620 29 H 0.015 0.985 30 H 0.027 0.973 31 H 0.383 0.617 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.138 0.862 38 H 0.441 0.559 39 H 0.435 0.565 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.573 -11.965 4.478 13.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.256 4.256 3 Si 0.793 3.207 4 H -0.215 1.215 5 H -0.202 1.202 6 H -0.223 1.223 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.379 5.379 10 C 0.000 4.000 11 C 0.096 3.904 12 O -0.371 6.371 13 C -0.190 4.190 14 C -0.010 4.010 15 N -0.326 5.326 16 C 0.290 3.710 17 O -0.452 6.452 18 C -0.006 4.006 19 H 0.174 0.826 20 C -0.024 4.024 21 N -0.391 5.391 22 C 0.395 3.605 23 O -0.519 6.519 24 N -0.375 5.375 25 C 0.000 4.000 26 C -0.150 4.150 27 H 0.061 0.939 28 H 0.214 0.786 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.232 0.768 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.136 0.864 36 H 0.108 0.892 37 H 0.156 0.844 38 H 0.284 0.716 39 H 0.278 0.722 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.935 -13.431 4.747 14.779 hybrid contribution 0.217 1.522 -0.117 1.542 sum -3.718 -11.909 4.630 13.307 Atomic orbital electron populations 1.69732 1.06023 1.26068 1.59126 1.25358 0.96355 1.00370 1.03565 0.85298 0.77708 0.80311 0.77349 1.21471 1.20203 1.22266 1.19496 0.91286 0.85447 1.41534 0.91451 1.42393 1.05628 1.00472 1.89411 1.21456 0.94674 0.85942 0.97962 1.21237 0.90813 0.93783 0.84614 1.86385 1.65651 1.44344 1.40701 1.22446 0.98391 0.99214 0.98960 1.21964 0.93791 0.80254 1.05024 1.48173 1.39001 1.16410 1.29064 1.21184 0.84077 0.83335 0.82386 1.90727 1.52259 1.27770 1.74486 1.22174 0.98449 0.86347 0.93591 0.82580 1.22590 1.03749 0.94161 0.81861 1.45039 1.65938 1.15305 1.12807 1.16223 0.78109 0.83206 0.82971 1.90952 1.63117 1.40791 1.57017 1.44928 1.65956 1.19056 1.07538 1.21429 0.89526 0.98125 0.90889 1.21811 0.97637 0.92060 1.03487 0.93898 0.78595 0.96690 0.95495 0.76833 0.90142 0.90288 0.89645 0.86397 0.89244 0.84387 0.71583 0.72210 0.90526 0.90055 0.89919 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -52.66 13.06 21.65 0.28 -52.38 16 2 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 3 Si 0.96 43.09 29.55 68.60 2.03 45.11 16 4 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 7 C -0.25 -12.51 9.99 84.03 0.84 -11.67 16 8 H 0.07 3.40 7.83 -2.91 -0.02 3.38 16 9 N -0.73 -31.81 5.07 -343.47 -1.74 -33.55 16 10 C 0.13 4.37 5.43 86.38 0.47 4.84 16 11 C 0.14 3.46 0.71 -10.77 -0.01 3.46 16 12 O -0.56 -15.14 11.70 -148.98 -1.74 -16.89 16 13 C -0.15 -3.14 4.88 30.67 0.15 -2.99 16 14 C 0.11 1.57 5.98 86.36 0.52 2.08 16 15 N -0.59 -10.45 2.97 -818.91 -2.43 -12.88 16 16 C 0.50 9.82 6.81 87.66 0.60 10.42 16 17 O -0.57 -16.48 15.99 -3.03 -0.05 -16.53 16 18 C 0.10 1.34 3.14 44.51 0.14 1.48 16 19 H 0.16 0.86 6.89 -2.39 -0.02 0.84 16 20 C 0.10 1.04 7.12 86.65 0.62 1.65 16 21 N -0.73 -11.46 6.37 -477.08 -3.04 -14.50 16 22 C 0.70 16.58 8.92 179.47 1.60 18.18 16 23 O -0.64 -21.32 18.05 -3.98 -0.07 -21.39 16 24 N -0.71 -13.29 5.64 -459.91 -2.59 -15.88 16 25 C 0.12 2.55 6.19 86.36 0.53 3.08 16 26 C -0.11 -2.44 5.11 30.67 0.16 -2.28 16 27 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 28 H 0.38 16.56 5.55 -92.71 -0.51 16.05 16 29 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.38 10.42 8.19 -74.06 -0.61 9.81 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.97 6.53 -2.39 -0.02 1.96 16 34 H 0.09 1.23 7.81 -2.39 -0.02 1.21 16 35 H 0.12 0.80 5.32 -2.39 -0.01 0.79 16 36 H 0.09 0.98 7.72 -2.38 -0.02 0.96 16 37 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.44 5.48 8.96 -92.71 -0.83 4.65 16 39 H 0.44 7.65 8.96 -92.71 -0.83 6.82 16 40 H 0.08 1.64 7.81 -2.39 -0.02 1.62 16 41 H 0.08 1.86 7.01 -2.39 -0.02 1.84 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 43 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -74.74 345.26 -4.97 -79.71 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -1.69 Total: 33.78 kcal Atomic # 6 Polarization: 19.31 SS G_CDS: 6.08 Total: 25.39 kcal Atomic # 7 Polarization: -119.67 SS G_CDS: -9.53 Total: -129.19 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: -1.86 Total: -54.80 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -74.74 -4.97 -79.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674091292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.038 kcal (2) G-P(sol) polarization free energy of solvation -74.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds