Wall clock time and date at job start Fri Apr 10 2020 18:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 117.00134 * 2 1 4 4 O 1.20833 * 119.99648 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00107 * 180.02562 * 3 2 1 6 6 H 1.08997 * 115.56209 * 34.31202 * 5 3 2 7 7 C 1.53006 * 117.49946 * 248.62100 * 5 3 2 8 8 C 1.53002 * 60.00123 * 252.51383 * 7 5 3 9 9 H 1.08997 * 117.49719 * 107.51539 * 8 7 5 10 10 C 1.50701 * 117.49547 * 252.51429 * 8 7 5 11 11 O 1.21279 * 120.00081 * 68.60577 * 10 8 7 12 12 N 1.34778 * 119.99661 * 248.60853 * 10 8 7 13 13 C 1.46498 * 120.00032 * 185.01456 * 12 10 8 14 14 C 1.53003 * 113.28053 * 291.76154 * 13 12 10 15 15 C 1.53001 * 109.46804 * 314.86126 * 14 13 12 16 16 O 1.42903 * 109.47039 * 185.04513 * 15 14 13 17 17 C 1.53495 * 114.20785 * 64.82385 * 13 12 10 18 18 N 1.47071 * 87.98361 * 87.52040 * 17 13 12 19 19 C 1.36937 * 136.05977 * 207.08020 * 18 17 13 20 20 H 1.07995 * 119.99770 * 354.82556 * 19 18 17 21 21 C 1.38812 * 119.99875 * 174.82780 * 19 18 17 22 22 N 1.31617 * 119.99819 * 183.96959 * 21 19 18 23 23 Si 1.86800 * 120.00119 * 4.24139 * 21 19 18 24 24 H 1.48500 * 109.47124 * 174.42631 * 23 21 19 25 25 H 1.48496 * 109.47343 * 294.42462 * 23 21 19 26 26 H 1.48495 * 109.46814 * 54.42729 * 23 21 19 27 27 C 1.47069 * 87.88222 * 27.34361 * 18 17 13 28 28 H 1.08994 * 109.47441 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47032 * 299.99896 * 1 2 3 30 30 H 1.08999 * 109.47294 * 59.99464 * 1 2 3 31 31 H 1.08993 * 117.49847 * 145.02172 * 7 5 3 32 32 H 1.09005 * 117.51492 * 359.97438 * 7 5 3 33 33 H 0.96999 * 120.00044 * 5.00897 * 12 10 8 34 34 H 1.08995 * 109.46993 * 74.86226 * 14 13 12 35 35 H 1.08999 * 109.46904 * 194.86367 * 14 13 12 36 36 H 1.09004 * 109.47391 * 305.04496 * 15 14 13 37 37 H 1.09002 * 109.47238 * 65.04929 * 15 14 13 38 38 H 0.96690 * 114.00380 * 179.97438 * 16 15 14 39 39 H 1.08998 * 113.47091 * 332.74687 * 17 13 12 40 40 H 1.09005 * 113.46911 * 202.30045 * 17 13 12 41 41 H 0.97008 * 120.00118 * 5.28406 * 22 21 19 42 42 H 1.09001 * 113.47335 * 87.43903 * 27 18 17 43 43 H 1.09003 * 113.46839 * 217.87382 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0783 0.4885 -0.5552 7 6 4.2465 1.8056 1.2631 8 6 4.2008 2.6672 -0.0005 9 1 3.5300 3.5263 0.0002 10 6 5.4857 2.8463 -0.7673 11 8 5.9779 1.9058 -1.3539 12 7 6.0877 4.0516 -0.8012 13 6 7.2754 4.2540 -1.6347 14 6 8.5024 3.4887 -1.1350 15 6 8.6310 3.6642 0.3795 16 8 9.8396 3.0487 0.8294 17 6 7.0179 4.1155 -3.1415 18 7 6.6642 5.5429 -3.1597 19 6 5.8650 6.3511 -3.9234 20 1 5.3735 5.9529 -4.7986 21 6 5.6867 7.6823 -3.5725 22 7 4.8579 8.4388 -4.2603 23 14 6.6288 8.4020 -2.1289 24 1 6.3671 9.8613 -2.0451 25 1 6.1854 7.7467 -0.8723 26 1 8.0828 8.1701 -2.3218 27 6 7.5518 5.7215 -2.0007 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 5.2058 1.3685 1.5397 32 1 3.6056 2.0983 2.0948 33 1 5.7346 4.7852 -0.2738 34 1 8.3909 2.4303 -1.3700 35 1 9.3964 3.8771 -1.6230 36 1 8.6523 4.7268 0.6217 37 1 7.7793 3.1961 0.8731 38 1 9.9871 3.1216 1.7822 39 1 6.1819 3.4582 -3.3805 40 1 7.9149 3.8832 -3.7157 41 1 4.3146 8.0486 -4.9629 42 1 8.5896 5.9127 -2.2740 43 1 7.1708 6.4325 -1.2676 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675067120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:11 Heat of formation + Delta-G solvation = -73.744287 kcal Electronic energy + Delta-G solvation = -26778.116424 eV Core-core repulsion = 22827.198517 eV Total energy + Delta-G solvation = -3950.917907 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.98227 -40.28473 -38.61249 -36.95216 -36.75015 -35.76609 -33.73354 -32.21382 -30.93058 -28.49802 -27.37934 -25.62482 -25.35793 -24.15652 -23.29868 -21.24005 -20.67494 -19.99819 -19.11550 -18.34516 -17.64129 -17.32516 -17.10772 -16.69794 -16.54847 -15.90119 -15.23394 -15.02401 -14.73657 -14.33150 -14.11034 -13.81461 -13.72102 -13.57472 -13.28719 -13.05994 -12.88685 -12.56817 -12.23867 -12.04504 -11.86166 -11.44542 -11.11498 -11.06111 -11.05520 -10.89338 -10.84244 -10.68563 -10.60897 -10.39761 -9.98105 -9.71675 -9.20876 -9.12031 -9.05269 -8.72972 -7.20260 -6.33746 -3.26632 1.81177 2.27121 2.59812 3.23946 3.26411 3.37472 3.57693 3.58221 4.18137 4.28203 4.45137 4.52071 4.53231 4.68651 4.72620 4.84558 4.85258 4.93200 5.06223 5.20779 5.24717 5.29217 5.32833 5.35247 5.53399 5.62800 5.68001 5.71764 5.94741 5.98839 6.07828 6.11124 6.16277 6.32177 6.39827 6.49253 6.91699 7.05673 7.51634 7.60199 7.69453 8.20708 8.37459 8.94063 9.45636 10.29944 11.17601 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.011140 B = 0.004537 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.833703 B = 6169.813195 C = 7878.880358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.493 3.507 4 O -0.501 6.501 5 C -0.137 4.137 6 H 0.151 0.849 7 C -0.117 4.117 8 C -0.154 4.154 9 H 0.141 0.859 10 C 0.549 3.451 11 O -0.535 6.535 12 N -0.686 5.686 13 C 0.133 3.867 14 C -0.111 4.111 15 C 0.083 3.917 16 O -0.576 6.576 17 C 0.127 3.873 18 N -0.623 5.623 19 C -0.299 4.299 20 H 0.082 0.918 21 C -0.025 4.025 22 N -0.935 5.935 23 Si 1.074 2.926 24 H -0.295 1.295 25 H -0.294 1.294 26 H -0.289 1.289 27 C 0.094 3.906 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.404 0.596 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.042 0.958 38 H 0.374 0.626 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.261 0.739 42 H 0.059 0.941 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.501 -15.313 15.662 21.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.336 3.664 4 O -0.389 6.389 5 C -0.156 4.156 6 H 0.168 0.832 7 C -0.155 4.155 8 C -0.175 4.175 9 H 0.159 0.841 10 C 0.335 3.665 11 O -0.412 6.412 12 N -0.335 5.335 13 C 0.045 3.955 14 C -0.151 4.151 15 C 0.005 3.995 16 O -0.380 6.380 17 C -0.001 4.001 18 N -0.351 5.351 19 C -0.425 4.425 20 H 0.100 0.900 21 C -0.224 4.224 22 N -0.577 5.577 23 Si 0.907 3.093 24 H -0.222 1.222 25 H -0.223 1.223 26 H -0.216 1.216 27 C -0.032 4.032 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.239 0.761 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.221 0.779 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.227 -14.227 15.207 20.826 hybrid contribution -0.882 -0.773 -0.268 1.203 sum -1.108 -15.000 14.939 21.199 Atomic orbital electron populations 1.23307 0.76015 1.03784 1.02763 1.86483 1.23537 1.32958 1.84023 1.22545 0.90313 0.81389 0.72199 1.90706 1.66800 1.36353 1.44994 1.21628 0.88249 0.99967 1.05757 0.83178 1.23087 1.02623 0.99564 0.90195 1.22382 0.98124 0.95662 1.01312 0.84148 1.19255 0.83936 0.82866 0.80485 1.90686 1.65166 1.40063 1.45247 1.45301 1.29228 1.12275 1.46707 1.21824 0.84084 0.97353 0.92240 1.21638 0.97052 1.02450 0.93926 1.22107 0.85779 0.95949 0.95663 1.86484 1.42779 1.80749 1.28037 1.22597 0.98627 0.87836 0.91000 1.46054 1.48893 1.04496 1.35662 1.20154 1.21784 0.93209 1.07351 0.90006 1.25681 1.00895 0.92338 1.03452 1.70899 1.25866 1.36652 1.24275 0.83674 0.75464 0.75378 0.74743 1.22189 1.22297 1.21608 1.23204 0.95796 0.92725 0.91483 0.87943 0.91820 0.91666 0.86468 0.87017 0.76102 0.89865 0.90086 0.93739 0.93965 0.77949 0.92748 0.93348 0.92867 0.92367 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.93 10.57 -39.26 -0.41 -4.34 16 3 C 0.49 6.27 7.74 36.00 0.28 6.54 16 4 O -0.50 -7.71 16.01 -18.76 -0.30 -8.01 16 5 C -0.14 -1.58 5.81 -91.77 -0.53 -2.12 16 6 H 0.15 1.76 7.67 -51.93 -0.40 1.36 16 7 C -0.12 -1.06 9.94 -26.73 -0.27 -1.32 16 8 C -0.15 -1.91 5.70 -91.77 -0.52 -2.44 16 9 H 0.14 1.82 7.67 -51.93 -0.40 1.43 16 10 C 0.55 8.37 6.97 -10.98 -0.08 8.29 16 11 O -0.53 -9.44 14.56 5.56 0.08 -9.36 16 12 N -0.69 -10.66 4.33 -47.30 -0.21 -10.87 16 13 C 0.13 2.28 0.77 -131.57 -0.10 2.18 16 14 C -0.11 -1.66 4.96 -26.73 -0.13 -1.79 16 15 C 0.08 1.03 6.64 37.16 0.25 1.28 16 16 O -0.58 -6.95 13.66 -35.23 -0.48 -7.43 16 17 C 0.13 2.61 7.67 -8.51 -0.07 2.54 16 18 N -0.62 -15.05 3.69 -184.57 -0.68 -15.73 16 19 C -0.30 -8.56 11.09 -15.06 -0.17 -8.73 16 20 H 0.08 2.52 8.05 -52.49 -0.42 2.10 16 21 C -0.03 -0.74 5.50 -17.43 -0.10 -0.83 16 22 N -0.93 -29.35 13.70 55.49 0.76 -28.59 16 23 Si 1.07 25.92 25.11 -169.99 -4.27 21.65 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -6.37 6.31 56.52 0.36 -6.02 16 26 H -0.29 -6.54 6.70 56.52 0.38 -6.16 16 27 C 0.09 1.87 5.29 -8.37 -0.04 1.82 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.40 5.73 8.75 -40.82 -0.36 5.38 16 34 H 0.08 1.34 7.34 -51.93 -0.38 0.96 16 35 H 0.08 1.19 7.87 -51.93 -0.41 0.78 16 36 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.04 0.50 7.54 -51.93 -0.39 0.11 16 38 H 0.37 2.65 9.12 45.56 0.42 3.07 16 39 H 0.05 1.20 7.46 -51.93 -0.39 0.81 16 40 H 0.05 0.95 8.11 -51.93 -0.42 0.53 16 41 H 0.26 8.17 8.73 -40.82 -0.36 7.82 16 42 H 0.06 1.12 7.85 -51.93 -0.41 0.71 16 43 H 0.06 1.16 4.01 -51.93 -0.21 0.96 16 LS Contribution 359.40 15.07 5.42 5.42 Total: -1.00 -36.26 359.40 -6.03 -42.29 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -5.52 Total: 8.20 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -0.41 Total: 6.78 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.13 Total: -55.20 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -1.12 Total: -29.14 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -4.27 Total: 21.65 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.26 -6.03 -42.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675067120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.457 kcal (2) G-P(sol) polarization free energy of solvation -36.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds