Wall clock time and date at job start Fri Apr 10 2020 18:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 117.00134 * 2 1 4 4 O 1.20833 * 119.99648 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00107 * 180.02562 * 3 2 1 6 6 H 1.08997 * 115.56209 * 34.31202 * 5 3 2 7 7 C 1.53006 * 117.49946 * 248.62100 * 5 3 2 8 8 C 1.53002 * 60.00123 * 252.51383 * 7 5 3 9 9 H 1.08997 * 117.49719 * 107.51539 * 8 7 5 10 10 C 1.50701 * 117.49547 * 252.51429 * 8 7 5 11 11 O 1.21279 * 120.00081 * 68.60577 * 10 8 7 12 12 N 1.34778 * 119.99661 * 248.60853 * 10 8 7 13 13 C 1.46498 * 120.00032 * 185.01456 * 12 10 8 14 14 C 1.53003 * 113.28053 * 291.76154 * 13 12 10 15 15 C 1.53001 * 109.46804 * 314.86126 * 14 13 12 16 16 O 1.42903 * 109.47039 * 185.04513 * 15 14 13 17 17 C 1.53495 * 114.20785 * 64.82385 * 13 12 10 18 18 N 1.47071 * 87.98361 * 87.52040 * 17 13 12 19 19 C 1.36937 * 136.05977 * 207.08020 * 18 17 13 20 20 H 1.07995 * 119.99770 * 354.82556 * 19 18 17 21 21 C 1.38812 * 119.99875 * 174.82780 * 19 18 17 22 22 N 1.31617 * 119.99819 * 183.96959 * 21 19 18 23 23 Si 1.86800 * 120.00119 * 4.24139 * 21 19 18 24 24 H 1.48500 * 109.47124 * 174.42631 * 23 21 19 25 25 H 1.48496 * 109.47343 * 294.42462 * 23 21 19 26 26 H 1.48495 * 109.46814 * 54.42729 * 23 21 19 27 27 C 1.47069 * 87.88222 * 27.34361 * 18 17 13 28 28 H 1.08994 * 109.47441 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47032 * 299.99896 * 1 2 3 30 30 H 1.08999 * 109.47294 * 59.99464 * 1 2 3 31 31 H 1.08993 * 117.49847 * 145.02172 * 7 5 3 32 32 H 1.09005 * 117.51492 * 359.97438 * 7 5 3 33 33 H 0.96999 * 120.00044 * 5.00897 * 12 10 8 34 34 H 1.08995 * 109.46993 * 74.86226 * 14 13 12 35 35 H 1.08999 * 109.46904 * 194.86367 * 14 13 12 36 36 H 1.09004 * 109.47391 * 305.04496 * 15 14 13 37 37 H 1.09002 * 109.47238 * 65.04929 * 15 14 13 38 38 H 0.96690 * 114.00380 * 179.97438 * 16 15 14 39 39 H 1.08998 * 113.47091 * 332.74687 * 17 13 12 40 40 H 1.09005 * 113.46911 * 202.30045 * 17 13 12 41 41 H 0.97008 * 120.00118 * 5.28406 * 22 21 19 42 42 H 1.09001 * 113.47335 * 87.43903 * 27 18 17 43 43 H 1.09003 * 113.46839 * 217.87382 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0783 0.4885 -0.5552 7 6 4.2465 1.8056 1.2631 8 6 4.2008 2.6672 -0.0005 9 1 3.5300 3.5263 0.0002 10 6 5.4857 2.8463 -0.7673 11 8 5.9779 1.9058 -1.3539 12 7 6.0877 4.0516 -0.8012 13 6 7.2754 4.2540 -1.6347 14 6 8.5024 3.4887 -1.1350 15 6 8.6310 3.6642 0.3795 16 8 9.8396 3.0487 0.8294 17 6 7.0179 4.1155 -3.1415 18 7 6.6642 5.5429 -3.1597 19 6 5.8650 6.3511 -3.9234 20 1 5.3735 5.9529 -4.7986 21 6 5.6867 7.6823 -3.5725 22 7 4.8579 8.4388 -4.2603 23 14 6.6288 8.4020 -2.1289 24 1 6.3671 9.8613 -2.0451 25 1 6.1854 7.7467 -0.8723 26 1 8.0828 8.1701 -2.3218 27 6 7.5518 5.7215 -2.0007 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 5.2058 1.3685 1.5397 32 1 3.6056 2.0983 2.0948 33 1 5.7346 4.7852 -0.2738 34 1 8.3909 2.4303 -1.3700 35 1 9.3964 3.8771 -1.6230 36 1 8.6523 4.7268 0.6217 37 1 7.7793 3.1961 0.8731 38 1 9.9871 3.1216 1.7822 39 1 6.1819 3.4582 -3.3805 40 1 7.9149 3.8832 -3.7157 41 1 4.3146 8.0486 -4.9629 42 1 8.5896 5.9127 -2.2740 43 1 7.1708 6.4325 -1.2676 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675067120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:10 Heat of formation + Delta-G solvation = -103.464215 kcal Electronic energy + Delta-G solvation = -26779.405177 eV Core-core repulsion = 22827.198517 eV Total energy + Delta-G solvation = -3952.206660 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.06008 -41.53353 -39.89400 -37.96186 -37.69807 -36.79134 -35.33972 -34.10899 -32.24126 -29.30503 -29.09816 -27.25449 -26.43519 -25.14441 -24.58008 -22.53471 -22.03370 -21.14784 -20.46480 -19.66336 -19.32972 -18.33436 -18.09991 -17.88111 -17.45109 -17.30754 -16.35156 -16.27284 -16.10611 -15.72797 -15.43943 -15.23872 -15.02775 -14.88719 -14.58668 -14.34697 -13.80116 -13.55977 -13.45133 -13.34989 -12.99089 -12.92603 -12.56189 -12.43496 -12.30517 -11.97786 -11.89489 -11.88074 -11.78489 -11.67275 -11.33856 -11.16190 -11.02849 -10.90641 -10.60469 -10.13551 -9.23265 -8.66836 -5.50848 0.84765 1.31213 1.34896 1.50171 1.57442 1.69711 2.09484 2.55776 2.63371 2.89436 3.10980 3.17334 3.35557 3.43475 3.57179 3.62724 3.91879 4.10482 4.13562 4.25842 4.26433 4.28347 4.31122 4.44280 4.47440 4.56536 4.57020 4.65440 4.66627 4.73118 4.79501 4.87856 4.90134 5.04845 5.14025 5.20084 5.23061 5.57584 5.90625 6.49176 6.58280 6.65501 6.98078 7.17570 7.28268 8.20717 8.87077 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.011140 B = 0.004537 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.833703 B = 6169.813195 C = 7878.880358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.495 3.505 4 O -0.535 6.535 5 C -0.147 4.147 6 H 0.148 0.852 7 C -0.076 4.076 8 C -0.170 4.170 9 H 0.134 0.866 10 C 0.550 3.450 11 O -0.562 6.562 12 N -0.687 5.687 13 C 0.161 3.839 14 C -0.105 4.105 15 C 0.089 3.911 16 O -0.591 6.591 17 C 0.118 3.882 18 N -0.651 5.651 19 C -0.292 4.292 20 H 0.038 0.962 21 C -0.083 4.083 22 N -0.970 5.970 23 Si 1.110 2.890 24 H -0.307 1.307 25 H -0.251 1.251 26 H -0.261 1.261 27 C 0.092 3.908 28 H 0.136 0.864 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.413 0.587 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.397 0.603 39 H 0.029 0.971 40 H 0.060 0.940 41 H 0.243 0.757 42 H 0.077 0.923 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.083 -16.416 19.372 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.339 3.661 4 O -0.425 6.425 5 C -0.167 4.167 6 H 0.166 0.834 7 C -0.113 4.113 8 C -0.191 4.191 9 H 0.152 0.848 10 C 0.337 3.663 11 O -0.441 6.441 12 N -0.337 5.337 13 C 0.072 3.928 14 C -0.145 4.145 15 C 0.011 3.989 16 O -0.400 6.400 17 C -0.009 4.009 18 N -0.379 5.379 19 C -0.419 4.419 20 H 0.056 0.944 21 C -0.274 4.274 22 N -0.615 5.615 23 Si 0.934 3.066 24 H -0.236 1.236 25 H -0.176 1.176 26 H -0.186 1.186 27 C -0.032 4.032 28 H 0.154 0.846 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.249 0.751 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.247 0.753 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.095 0.905 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.375 -15.407 18.958 24.468 hybrid contribution -1.426 -0.599 -1.536 2.180 sum -0.051 -16.006 17.422 23.658 Atomic orbital electron populations 1.23614 0.74364 1.05986 1.02625 1.86478 1.25199 1.32061 1.83461 1.22756 0.90723 0.81328 0.71249 1.90692 1.67573 1.37408 1.46823 1.21676 0.87715 0.99181 1.08095 0.83449 1.23302 1.03206 0.95806 0.88998 1.22236 0.96710 0.96073 1.04083 0.84850 1.19655 0.84396 0.82223 0.80008 1.90676 1.66120 1.40921 1.46374 1.45321 1.29047 1.12856 1.46485 1.21439 0.85620 0.95644 0.90073 1.21526 0.95607 1.00999 0.96348 1.21969 0.86413 0.97017 0.93509 1.86419 1.42377 1.80784 1.30373 1.22805 0.98009 0.85604 0.94457 1.46026 1.49753 1.05737 1.36402 1.19926 1.21787 0.93924 1.06245 0.94443 1.27233 1.01269 0.93007 1.05841 1.71028 1.27767 1.37363 1.25353 0.83343 0.75823 0.74127 0.73288 1.23574 1.17645 1.18590 1.23425 0.95660 0.94600 0.89556 0.84611 0.91315 0.92514 0.84464 0.84763 0.75086 0.91187 0.89615 0.92229 0.93102 0.75276 0.95205 0.92196 0.94815 0.90530 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.36 -7.50 10.57 -51.42 -0.54 -8.04 16 3 C 0.49 12.19 7.74 71.24 0.55 12.75 16 4 O -0.53 -16.34 16.01 21.94 0.35 -15.98 16 5 C -0.15 -3.21 5.81 -11.54 -0.07 -3.28 16 6 H 0.15 3.31 7.67 -2.39 -0.02 3.29 16 7 C -0.08 -1.12 9.94 30.60 0.30 -0.82 16 8 C -0.17 -3.97 5.70 -11.54 -0.07 -4.04 16 9 H 0.13 3.36 7.67 -2.39 -0.02 3.34 16 10 C 0.55 16.03 6.97 87.66 0.61 16.64 16 11 O -0.56 -19.42 14.56 -3.03 -0.04 -19.47 16 12 N -0.69 -19.98 4.33 -421.96 -1.83 -21.81 16 13 C 0.16 5.18 0.77 4.16 0.00 5.18 16 14 C -0.11 -2.84 4.96 30.60 0.15 -2.69 16 15 C 0.09 1.85 6.64 71.98 0.48 2.32 16 16 O -0.59 -11.90 13.66 -148.98 -2.04 -13.93 16 17 C 0.12 4.84 7.67 83.18 0.64 5.48 16 18 N -0.65 -31.30 3.69 -737.85 -2.72 -34.02 16 19 C -0.29 -17.24 11.09 84.03 0.93 -16.31 16 20 H 0.04 2.47 8.05 -2.91 -0.02 2.45 16 21 C -0.08 -4.91 5.50 84.86 0.47 -4.44 16 22 N -0.97 -63.19 13.70 21.65 0.30 -62.89 16 23 Si 1.11 50.56 25.11 68.60 1.72 52.29 16 24 H -0.31 -14.64 7.11 99.48 0.71 -13.94 16 25 H -0.25 -9.59 6.31 99.48 0.63 -8.96 16 26 H -0.26 -10.63 6.70 99.48 0.67 -9.96 16 27 C 0.09 3.41 5.29 83.26 0.44 3.85 16 28 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 0.96 8.13 -2.38 -0.02 0.94 16 30 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 31 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.13 1.44 8.14 -2.38 -0.02 1.43 16 33 H 0.41 10.58 8.75 -92.71 -0.81 9.77 16 34 H 0.07 2.12 7.34 -2.39 -0.02 2.10 16 35 H 0.09 2.24 7.87 -2.39 -0.02 2.22 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 0.98 7.54 -2.39 -0.02 0.96 16 38 H 0.40 3.91 9.12 -74.06 -0.68 3.23 16 39 H 0.03 1.35 7.46 -2.39 -0.02 1.33 16 40 H 0.06 2.33 8.11 -2.38 -0.02 2.31 16 41 H 0.24 16.12 8.73 -92.70 -0.81 15.31 16 42 H 0.08 2.63 7.85 -2.39 -0.02 2.62 16 43 H 0.07 2.37 4.01 -2.39 -0.01 2.36 16 Total: -1.00 -82.49 359.40 0.24 -82.25 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -0.59 Total: 25.36 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 5.64 Total: 16.25 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -4.26 Total: -118.72 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: -2.27 Total: -57.42 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 1.72 Total: 52.29 kcal Total: -82.49 0.24 -82.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675067120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.213 kcal (2) G-P(sol) polarization free energy of solvation -82.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds