Wall clock time and date at job start Fri Apr 10 2020 18:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34226 * 117.00440 * 2 1 4 4 O 1.20830 * 119.99434 * 0.02562 * 3 2 1 5 5 C 1.50691 * 120.00554 * 180.02562 * 3 2 1 6 6 H 1.09001 * 115.56383 * 308.20741 * 5 3 2 7 7 C 1.53004 * 117.50243 * 162.52276 * 5 3 2 8 8 C 1.53004 * 117.50247 * 93.89783 * 5 3 2 9 9 H 1.09000 * 117.52150 * 214.97197 * 8 5 3 10 10 C 1.50704 * 117.49412 * 0.02562 * 8 5 3 11 11 O 1.21283 * 120.00251 * 5.22626 * 10 8 5 12 12 N 1.34776 * 119.99890 * 185.22173 * 10 8 5 13 13 C 1.46498 * 120.00344 * 175.12412 * 12 10 8 14 14 C 1.52996 * 112.94348 * 54.61567 * 13 12 10 15 15 C 1.53007 * 109.47001 * 65.82939 * 14 13 12 16 16 O 1.42899 * 109.47106 * 185.06358 * 15 14 13 17 17 C 1.53942 * 113.74245 * 186.21291 * 13 12 10 18 18 N 1.47587 * 86.24002 * 137.99908 * 17 13 12 19 19 C 1.36936 * 134.49281 * 155.41744 * 18 17 13 20 20 H 1.07997 * 119.99871 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00231 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99719 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00168 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46782 * 89.99793 * 23 21 19 25 25 H 1.48498 * 109.46795 * 209.99631 * 23 21 19 26 26 H 1.48496 * 109.46833 * 329.99804 * 23 21 19 27 27 C 1.47809 * 90.92200 * 335.46188 * 18 17 13 28 28 H 1.08997 * 109.46972 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46649 * 299.99489 * 1 2 3 30 30 H 1.08995 * 109.47480 * 60.00001 * 1 2 3 31 31 H 1.08997 * 117.50333 * 145.01926 * 7 5 3 32 32 H 1.09002 * 117.49429 * 359.97438 * 7 5 3 33 33 H 0.97005 * 119.99623 * 355.11429 * 12 10 8 34 34 H 1.09000 * 109.47114 * 185.82667 * 14 13 12 35 35 H 1.09001 * 109.47577 * 305.83149 * 14 13 12 36 36 H 1.08994 * 109.47171 * 305.06353 * 15 14 13 37 37 H 1.09002 * 109.46580 * 65.06990 * 15 14 13 38 38 H 0.96697 * 114.00104 * 179.97438 * 16 15 14 39 39 H 1.08997 * 113.76735 * 252.35587 * 17 13 12 40 40 H 1.08992 * 113.76890 * 23.64548 * 17 13 12 41 41 H 0.96997 * 119.99460 * 179.97438 * 22 21 19 42 42 H 1.09003 * 113.66298 * 270.22771 * 27 18 17 43 43 H 1.09002 * 113.93805 * 138.88927 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0682 0.6919 0.7718 7 6 4.2040 2.6046 -0.4082 8 6 4.2665 1.4042 -1.3548 9 1 5.2290 0.9067 -1.4738 10 6 3.3983 1.4436 -2.5860 11 8 2.1908 1.4693 -2.4760 12 7 3.9638 1.4504 -3.8094 13 6 3.1216 1.3807 -5.0061 14 6 2.0500 2.4720 -5.0456 15 6 2.7209 3.8411 -5.1748 16 8 1.7294 4.8669 -5.0932 17 6 3.9174 1.2456 -6.3170 18 7 2.8976 0.2580 -6.7205 19 6 2.4320 -0.2042 -7.9225 20 1 2.8423 0.1804 -8.8445 21 6 1.4328 -1.1672 -7.9559 22 7 0.9332 -1.6364 -6.8321 23 14 0.7982 -1.7983 -9.5956 24 1 1.6014 -2.9738 -10.0179 25 1 -0.6256 -2.1962 -9.4552 26 1 0.9144 -0.7266 -10.6169 27 6 2.5815 -0.0294 -5.3055 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 5.1252 2.8965 0.0960 32 1 3.5349 3.4223 -0.6763 33 1 4.9285 1.5015 -3.8975 34 1 1.3943 2.3066 -5.9004 35 1 1.4644 2.4397 -4.1268 36 1 3.4434 3.9692 -4.3689 37 1 3.2324 3.9058 -6.1352 38 1 2.0840 5.7635 -5.1674 39 1 3.9182 2.1499 -6.9255 40 1 4.9124 0.8208 -6.1851 41 1 0.2347 -2.3090 -6.8555 42 1 3.1835 -0.8307 -4.8768 43 1 1.5163 -0.1437 -5.1047 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675067122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:17 Heat of formation + Delta-G solvation = -79.205549 kcal Electronic energy + Delta-G solvation = -27440.071367 eV Core-core repulsion = 23488.916642 eV Total energy + Delta-G solvation = -3951.154726 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.75394 -39.73099 -38.23975 -36.51231 -36.38073 -35.56531 -33.62803 -31.92147 -30.30607 -27.99030 -27.19217 -25.16422 -25.12547 -24.11927 -22.93926 -21.66403 -20.59493 -19.78497 -18.67144 -18.11950 -17.16757 -16.81847 -16.75024 -16.14343 -15.83012 -15.53749 -14.99549 -14.86630 -14.65753 -14.14678 -13.87988 -13.71712 -13.56215 -13.01213 -12.87249 -12.62664 -12.27850 -11.91396 -11.82890 -11.67670 -11.50136 -11.17626 -10.97122 -10.92143 -10.87803 -10.79709 -10.64058 -10.48479 -10.22067 -10.14982 -10.00407 -9.74081 -9.58637 -9.08143 -8.83934 -8.55564 -6.93817 -5.77772 -3.12504 2.26127 2.70663 2.85789 3.33877 3.40090 3.44626 3.46534 3.72189 4.40098 4.46855 4.48974 4.49340 4.67480 4.91867 5.01705 5.10274 5.32375 5.32409 5.41085 5.45442 5.47810 5.49146 5.53880 5.62871 5.78953 5.82441 5.86124 5.93208 6.15019 6.33743 6.47233 6.55278 6.69944 6.90553 6.91964 7.23339 7.31669 7.56238 7.83341 7.89019 7.95402 8.05827 8.52088 9.01136 9.67864 10.53206 11.38561 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.014089 B = 0.004356 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.905126 B = 6426.748290 C = 7272.355734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.354 6.354 3 C 0.507 3.493 4 O -0.501 6.501 5 C -0.135 4.135 6 H 0.143 0.857 7 C -0.119 4.119 8 C -0.165 4.165 9 H 0.136 0.864 10 C 0.534 3.466 11 O -0.516 6.516 12 N -0.709 5.709 13 C 0.126 3.874 14 C -0.104 4.104 15 C 0.084 3.916 16 O -0.572 6.572 17 C 0.118 3.882 18 N -0.602 5.602 19 C -0.227 4.227 20 H 0.082 0.918 21 C -0.004 4.004 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.289 1.289 26 H -0.280 1.280 27 C 0.170 3.830 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.396 0.604 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.035 0.965 37 H 0.041 0.959 38 H 0.370 0.630 39 H 0.050 0.950 40 H 0.037 0.963 41 H 0.255 0.745 42 H 0.029 0.971 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.689 7.981 13.828 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.270 6.270 3 C 0.350 3.650 4 O -0.388 6.388 5 C -0.155 4.155 6 H 0.161 0.839 7 C -0.157 4.157 8 C -0.186 4.186 9 H 0.154 0.846 10 C 0.319 3.681 11 O -0.392 6.392 12 N -0.360 5.360 13 C 0.040 3.960 14 C -0.142 4.142 15 C 0.006 3.994 16 O -0.376 6.376 17 C -0.009 4.009 18 N -0.329 5.329 19 C -0.354 4.354 20 H 0.099 0.901 21 C -0.201 4.201 22 N -0.562 5.562 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.215 1.215 26 H -0.205 1.205 27 C 0.044 3.956 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.230 0.770 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.216 0.784 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.940 7.538 13.716 17.550 hybrid contribution 0.621 -0.154 -1.014 1.199 sum 8.562 7.384 12.702 17.005 Atomic orbital electron populations 1.23189 0.76176 1.03318 1.02427 1.86397 1.23447 1.33056 1.84126 1.21897 0.89671 0.81633 0.71830 1.90626 1.66447 1.36456 1.45235 1.21679 0.89842 1.04363 0.99597 0.83922 1.23123 1.02518 0.91063 0.98963 1.22529 1.01541 1.05325 0.89239 0.84620 1.19461 0.88202 0.76640 0.83816 1.90713 1.14227 1.48584 1.85630 1.45970 1.10084 1.74586 1.05330 1.22992 0.92026 0.98747 0.82202 1.21458 0.97661 0.89619 1.05438 1.22159 0.90171 0.88487 0.98564 1.86544 1.36907 1.17390 1.96788 1.22858 0.92991 0.93771 0.91281 1.45668 1.39740 1.45607 1.01876 1.18937 1.15658 1.18116 0.82737 0.90070 1.24813 0.99057 0.99008 0.97205 1.69838 1.29781 1.32016 1.24517 0.86111 0.78105 0.78762 0.82705 1.21580 1.21549 1.20538 1.22585 1.00797 0.89126 0.83093 0.88470 0.92591 0.91307 0.86406 0.86813 0.77018 0.89481 0.88816 0.94683 0.94033 0.78449 0.93157 0.94594 0.93478 0.95350 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.56 101.05 1.07 1.65 16 2 O -0.35 -5.60 10.56 -39.66 -0.42 -6.02 16 3 C 0.51 8.00 5.10 36.00 0.18 8.19 16 4 O -0.50 -9.30 15.66 -24.68 -0.39 -9.69 16 5 C -0.14 -1.51 6.30 -91.77 -0.58 -2.09 16 6 H 0.14 1.09 8.14 -51.93 -0.42 0.67 16 7 C -0.12 -1.11 9.74 -26.73 -0.26 -1.37 16 8 C -0.16 -1.76 6.19 -91.76 -0.57 -2.33 16 9 H 0.14 0.98 8.14 -51.93 -0.42 0.56 16 10 C 0.53 8.33 7.35 -10.98 -0.08 8.25 16 11 O -0.52 -10.34 11.55 -12.19 -0.14 -10.48 16 12 N -0.71 -10.42 4.93 -48.82 -0.24 -10.66 16 13 C 0.13 2.39 0.73 -133.69 -0.10 2.29 16 14 C -0.10 -2.07 4.81 -26.73 -0.13 -2.20 16 15 C 0.08 1.35 6.80 37.16 0.25 1.60 16 16 O -0.57 -9.32 13.66 -35.23 -0.48 -9.81 16 17 C 0.12 2.28 8.02 -2.97 -0.02 2.26 16 18 N -0.60 -15.23 3.56 -176.74 -0.63 -15.86 16 19 C -0.23 -6.32 10.70 -15.06 -0.16 -6.48 16 20 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 21 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 22 N -0.92 -27.54 11.40 55.49 0.63 -26.91 16 23 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 27 C 0.17 4.12 6.84 -2.85 -0.02 4.10 16 28 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 30 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 31 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.11 1.34 7.78 -51.93 -0.40 0.93 16 33 H 0.40 4.35 8.67 -40.82 -0.35 3.99 16 34 H 0.09 2.02 8.01 -51.93 -0.42 1.60 16 35 H 0.09 2.10 5.82 -51.93 -0.30 1.80 16 36 H 0.03 0.51 7.82 -51.93 -0.41 0.10 16 37 H 0.04 0.63 6.96 -51.93 -0.36 0.26 16 38 H 0.37 3.92 9.12 45.56 0.42 4.33 16 39 H 0.05 0.92 6.88 -51.93 -0.36 0.56 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 2.25 7.13 -51.93 -0.37 1.88 16 LS Contribution 360.28 15.07 5.43 5.43 Total: -1.00 -37.51 360.28 -7.25 -44.76 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.48 Total: 8.36 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: -0.51 Total: 13.68 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.24 Total: -53.43 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -1.43 Total: -36.00 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.51 -7.25 -44.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675067122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.448 kcal (2) G-P(sol) polarization free energy of solvation -37.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds