Wall clock time and date at job start Fri Apr 10 2020 18:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42900 * 109.47219 * 2 1 4 4 C 1.36000 * 116.99913 * 180.02562 * 3 2 1 5 5 C 1.39689 * 125.67168 * 180.02562 * 4 3 2 6 6 C 1.37985 * 107.64072 * 179.97438 * 5 4 3 7 7 C 1.47164 * 126.43728 * 179.97438 * 6 5 4 8 8 O 1.21636 * 119.99943 * 349.12794 * 7 6 5 9 9 N 1.34770 * 120.00374 * 169.13404 * 7 6 5 10 10 C 1.46503 * 119.99892 * 0.98806 * 9 7 6 11 11 C 1.46504 * 120.00721 * 180.98592 * 9 7 6 12 12 C 1.52998 * 109.46962 * 89.99399 * 11 9 7 13 13 H 1.09004 * 109.46919 * 60.01163 * 12 11 9 14 14 O 1.42890 * 109.47522 * 300.00555 * 12 11 9 15 15 C 1.52998 * 109.46734 * 180.02562 * 12 11 9 16 16 N 1.46507 * 109.46931 * 185.00484 * 15 12 11 17 17 C 1.36937 * 120.00028 * 180.02562 * 16 15 12 18 18 H 1.08002 * 119.99684 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00114 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00053 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00361 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46697 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46993 * 120.00026 * 21 19 17 24 24 H 1.48495 * 109.47158 * 239.99979 * 21 19 17 25 25 N 1.36671 * 107.12536 * 0.02562 * 6 5 4 26 26 H 0.97001 * 126.09420 * 180.02562 * 25 6 5 27 27 N 1.31223 * 125.67296 * 359.69826 * 4 3 2 28 28 H 1.09000 * 109.46740 * 299.99443 * 1 2 3 29 29 H 1.08995 * 109.47308 * 59.99414 * 1 2 3 30 30 H 1.08999 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46740 * 240.00557 * 2 1 3 32 32 H 1.08995 * 109.47308 * 120.00586 * 2 1 3 33 33 H 1.07999 * 126.18010 * 359.94960 * 5 4 3 34 34 H 1.09004 * 109.47552 * 83.40064 * 10 9 7 35 35 H 1.08998 * 109.47516 * 203.40405 * 10 9 7 36 36 H 1.09000 * 109.46866 * 323.40330 * 10 9 7 37 37 H 1.08991 * 109.47439 * 210.00416 * 11 9 7 38 38 H 1.09004 * 109.46354 * 330.00216 * 11 9 7 39 39 H 0.96700 * 114.00473 * 300.00205 * 14 12 11 40 40 H 1.08999 * 109.47885 * 305.00358 * 15 12 11 41 41 H 1.09000 * 109.47205 * 65.01014 * 15 12 11 42 42 H 0.97004 * 119.99946 * 0.02562 * 16 15 12 43 43 H 0.97000 * 120.00277 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3547 1.5254 -0.0005 5 6 4.0136 2.7571 -0.0001 6 6 5.3703 2.5056 -0.0003 7 6 6.4456 3.5103 -0.0006 8 8 6.1836 4.6814 -0.1993 9 7 7.7206 3.1330 0.2192 10 6 8.0391 1.7197 0.4369 11 6 8.7882 4.1360 0.2405 12 6 8.9670 4.6604 1.6666 13 1 9.2314 3.8345 2.3270 14 8 7.7462 5.2546 2.1122 15 6 10.0815 5.7084 1.6886 16 7 10.3344 6.1233 3.0708 17 6 11.2961 7.0604 3.3392 18 1 11.8679 7.4939 2.5320 19 6 11.5353 7.4540 4.6486 20 7 10.8374 6.9268 5.6322 21 14 12.8468 8.7329 5.0149 22 1 13.4828 9.1672 3.7451 23 1 12.2234 9.9042 5.6818 24 1 13.8762 8.1443 5.9087 25 7 5.5279 1.1480 -0.0015 26 1 6.3724 0.6707 -0.0015 27 7 4.2530 0.5689 0.0046 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.5457 3.7305 -0.0001 34 1 8.1403 1.2176 -0.5252 35 1 8.9753 1.6390 0.9891 36 1 7.2384 1.2508 1.0089 37 1 9.7193 3.6829 -0.0995 38 1 8.5238 4.9620 -0.4199 39 1 7.4497 5.9982 1.5699 40 1 10.9906 5.2810 1.2655 41 1 9.7783 6.5737 1.0992 42 1 9.8205 5.7343 3.7957 43 1 11.0048 7.2016 6.5473 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677090635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:24 Heat of formation + Delta-G solvation = -7.926305 kcal Electronic energy + Delta-G solvation = -25654.568371 eV Core-core repulsion = 21738.797296 eV Total energy + Delta-G solvation = -3915.771074 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.81446 -39.90074 -38.50034 -37.31772 -35.68173 -34.01608 -32.47990 -31.48584 -30.93279 -30.46287 -29.25154 -27.41176 -25.85906 -24.13355 -23.26594 -22.02176 -21.56298 -21.14061 -20.31559 -18.26052 -17.39417 -17.17412 -16.80620 -16.64381 -16.15441 -16.04434 -15.29950 -15.04668 -14.66438 -14.44569 -14.39498 -13.92345 -13.75086 -13.67207 -13.46311 -13.00155 -12.96946 -12.92244 -12.65736 -12.39907 -12.18552 -12.02316 -11.59771 -11.21530 -11.15924 -10.94532 -10.83652 -10.74745 -10.29177 -10.13067 -9.80864 -9.70554 -9.40804 -8.97087 -8.90575 -8.70652 -6.92656 -5.75312 -3.04986 0.83564 2.13097 2.28162 2.42981 2.97847 3.06524 3.43466 3.48604 3.51320 4.05252 4.36862 4.45989 4.55543 4.61658 4.67981 4.72825 4.79065 4.95707 4.98279 5.07333 5.10105 5.15806 5.24620 5.44518 5.46413 5.50707 5.59547 5.63985 5.65048 5.86278 5.92930 6.09073 6.27459 6.49205 6.59426 6.69980 6.95420 6.96640 7.24555 7.69035 7.80863 8.15623 8.42782 9.54214 10.11772 10.47104 11.47094 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.029682 B = 0.002267 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.106357 B =12345.873191 C =12699.238376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.288 6.288 4 C 0.263 3.737 5 C -0.191 4.191 6 C 0.067 3.933 7 C 0.590 3.410 8 O -0.505 6.505 9 N -0.601 5.601 10 C 0.052 3.948 11 C 0.084 3.916 12 C 0.085 3.915 13 H 0.096 0.904 14 O -0.548 6.548 15 C 0.126 3.874 16 N -0.725 5.725 17 C -0.243 4.243 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.929 5.929 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 N -0.456 5.456 26 H 0.447 0.553 27 N -0.326 5.326 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.167 0.833 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.375 0.625 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.388 0.612 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.312 -17.602 -15.364 27.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 O -0.193 6.193 4 C 0.059 3.941 5 C -0.222 4.222 6 C -0.063 4.063 7 C 0.375 3.625 8 O -0.377 6.377 9 N -0.334 5.334 10 C -0.092 4.092 11 C -0.038 4.038 12 C 0.024 3.976 13 H 0.114 0.886 14 O -0.353 6.353 15 C -0.002 4.002 16 N -0.370 5.370 17 C -0.374 4.374 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.578 5.578 21 Si 0.739 3.261 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.219 1.219 25 N -0.182 5.182 26 H 0.302 0.698 27 N -0.168 5.168 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.185 0.815 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.223 0.777 40 H 0.043 0.957 41 H 0.040 0.960 42 H 0.223 0.777 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.384 -18.316 -15.043 27.724 hybrid contribution 1.001 1.166 0.162 1.545 sum -13.383 -17.150 -14.881 26.356 Atomic orbital electron populations 1.21799 0.92592 1.02965 1.03624 1.22734 0.95530 0.81142 1.02234 1.86326 1.13785 1.29746 1.89398 1.20231 0.84409 0.91921 0.97500 1.21090 0.89649 0.98358 1.13120 1.21228 0.95364 0.84377 1.05369 1.16957 0.81093 0.86961 0.77452 1.90839 1.81800 1.16925 1.48154 1.47560 1.06911 1.08030 1.70931 1.22268 1.03676 0.81721 1.01558 1.22412 0.89497 0.92317 0.99603 1.22506 0.85809 0.96171 0.93113 0.88571 1.86558 1.39642 1.51434 1.57641 1.21234 0.94623 0.94617 0.89774 1.42253 1.44202 1.49241 1.01313 1.19263 1.11196 1.14763 0.92158 0.91172 1.24772 1.00011 1.00493 0.95699 1.69692 1.42983 1.46192 0.98911 0.86109 0.81076 0.81129 0.77802 1.20562 1.21816 1.21871 1.47321 1.07046 1.03687 1.60186 0.69848 1.77276 0.88602 1.20584 1.30362 0.91378 0.91463 0.90228 0.91786 0.91693 0.81496 0.91656 0.88599 0.90740 0.89016 0.88828 0.77682 0.95748 0.95973 0.77743 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.06 0.47 6.33 37.16 0.24 0.71 16 3 O -0.29 -3.21 10.22 -19.74 -0.20 -3.42 16 4 C 0.26 3.19 7.85 -17.27 -0.14 3.06 16 5 C -0.19 -2.39 10.65 -39.13 -0.42 -2.81 16 6 C 0.07 0.79 6.71 -82.18 -0.55 0.24 16 7 C 0.59 7.69 7.15 -12.64 -0.09 7.60 16 8 O -0.50 -8.01 15.34 -2.19 -0.03 -8.05 16 9 N -0.60 -6.44 2.83 -182.95 -0.52 -6.96 16 10 C 0.05 0.34 8.90 59.85 0.53 0.88 16 11 C 0.08 0.98 5.12 -4.04 -0.02 0.96 16 12 C 0.08 1.34 3.27 -26.73 -0.09 1.25 16 13 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 14 O -0.55 -9.99 12.11 -42.67 -0.52 -10.51 16 15 C 0.13 2.44 5.90 -4.04 -0.02 2.41 16 16 N -0.73 -18.59 5.55 -59.91 -0.33 -18.92 16 17 C -0.24 -6.86 9.99 -15.06 -0.15 -7.02 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -28.71 13.06 55.49 0.72 -27.99 16 21 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 N -0.46 -4.48 6.39 33.41 0.21 -4.27 16 26 H 0.45 3.00 5.01 -182.65 -0.92 2.08 16 27 N -0.33 -3.75 12.05 30.46 0.37 -3.38 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.17 1.99 8.06 -52.49 -0.42 1.57 16 34 H 0.07 0.27 7.75 -51.93 -0.40 -0.13 16 35 H 0.10 0.55 8.02 -51.93 -0.42 0.14 16 36 H 0.07 0.49 5.19 -51.93 -0.27 0.22 16 37 H 0.09 0.83 8.07 -51.93 -0.42 0.41 16 38 H 0.09 1.15 7.41 -51.93 -0.38 0.76 16 39 H 0.38 6.39 8.48 45.56 0.39 6.78 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.39 10.77 7.67 -40.82 -0.31 10.46 16 43 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -35.69 363.00 -6.36 -42.05 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -6.08 Total: 12.09 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -0.42 Total: 6.31 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.46 Total: -61.52 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.75 Total: -21.97 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.69 -6.36 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677090635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.122 kcal (2) G-P(sol) polarization free energy of solvation -35.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds