Wall clock time and date at job start Fri Apr 10 2020 18:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42900 * 109.47219 * 2 1 4 4 C 1.36000 * 116.99913 * 180.02562 * 3 2 1 5 5 C 1.39689 * 125.67168 * 180.02562 * 4 3 2 6 6 C 1.37985 * 107.64072 * 179.97438 * 5 4 3 7 7 C 1.47164 * 126.43728 * 179.97438 * 6 5 4 8 8 O 1.21636 * 119.99943 * 349.12794 * 7 6 5 9 9 N 1.34770 * 120.00374 * 169.13404 * 7 6 5 10 10 C 1.46503 * 119.99892 * 0.98806 * 9 7 6 11 11 C 1.46504 * 120.00721 * 180.98592 * 9 7 6 12 12 C 1.52998 * 109.46962 * 89.99399 * 11 9 7 13 13 H 1.09004 * 109.46919 * 60.01163 * 12 11 9 14 14 O 1.42890 * 109.47522 * 300.00555 * 12 11 9 15 15 C 1.52998 * 109.46734 * 180.02562 * 12 11 9 16 16 N 1.46507 * 109.46931 * 185.00484 * 15 12 11 17 17 C 1.36937 * 120.00028 * 180.02562 * 16 15 12 18 18 H 1.08002 * 119.99684 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00114 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00053 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00361 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46697 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46993 * 120.00026 * 21 19 17 24 24 H 1.48495 * 109.47158 * 239.99979 * 21 19 17 25 25 N 1.36671 * 107.12536 * 0.02562 * 6 5 4 26 26 H 0.97001 * 126.09420 * 180.02562 * 25 6 5 27 27 N 1.31223 * 125.67296 * 359.69826 * 4 3 2 28 28 H 1.09000 * 109.46740 * 299.99443 * 1 2 3 29 29 H 1.08995 * 109.47308 * 59.99414 * 1 2 3 30 30 H 1.08999 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46740 * 240.00557 * 2 1 3 32 32 H 1.08995 * 109.47308 * 120.00586 * 2 1 3 33 33 H 1.07999 * 126.18010 * 359.94960 * 5 4 3 34 34 H 1.09004 * 109.47552 * 83.40064 * 10 9 7 35 35 H 1.08998 * 109.47516 * 203.40405 * 10 9 7 36 36 H 1.09000 * 109.46866 * 323.40330 * 10 9 7 37 37 H 1.08991 * 109.47439 * 210.00416 * 11 9 7 38 38 H 1.09004 * 109.46354 * 330.00216 * 11 9 7 39 39 H 0.96700 * 114.00473 * 300.00205 * 14 12 11 40 40 H 1.08999 * 109.47885 * 305.00358 * 15 12 11 41 41 H 1.09000 * 109.47205 * 65.01014 * 15 12 11 42 42 H 0.97004 * 119.99946 * 0.02562 * 16 15 12 43 43 H 0.97000 * 120.00277 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3547 1.5254 -0.0005 5 6 4.0136 2.7571 -0.0001 6 6 5.3703 2.5056 -0.0003 7 6 6.4456 3.5103 -0.0006 8 8 6.1836 4.6814 -0.1993 9 7 7.7206 3.1330 0.2192 10 6 8.0391 1.7197 0.4369 11 6 8.7882 4.1360 0.2405 12 6 8.9670 4.6604 1.6666 13 1 9.2314 3.8345 2.3270 14 8 7.7462 5.2546 2.1122 15 6 10.0815 5.7084 1.6886 16 7 10.3344 6.1233 3.0708 17 6 11.2961 7.0604 3.3392 18 1 11.8679 7.4939 2.5320 19 6 11.5353 7.4540 4.6486 20 7 10.8374 6.9268 5.6322 21 14 12.8468 8.7329 5.0149 22 1 13.4828 9.1672 3.7451 23 1 12.2234 9.9042 5.6818 24 1 13.8762 8.1443 5.9087 25 7 5.5279 1.1480 -0.0015 26 1 6.3724 0.6707 -0.0015 27 7 4.2530 0.5689 0.0046 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.5457 3.7305 -0.0001 34 1 8.1403 1.2176 -0.5252 35 1 8.9753 1.6390 0.9891 36 1 7.2384 1.2508 1.0089 37 1 9.7193 3.6829 -0.0995 38 1 8.5238 4.9620 -0.4199 39 1 7.4497 5.9982 1.5699 40 1 10.9906 5.2810 1.2655 41 1 9.7783 6.5737 1.0992 42 1 9.8205 5.7343 3.7957 43 1 11.0048 7.2016 6.5473 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677090635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:23 Heat of formation + Delta-G solvation = -38.264612 kcal Electronic energy + Delta-G solvation = -25655.883938 eV Core-core repulsion = 21738.797296 eV Total energy + Delta-G solvation = -3917.086642 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.70307 -40.86216 -39.34304 -38.61758 -36.71882 -35.88769 -33.33609 -33.06412 -32.01497 -31.30765 -30.54913 -28.23265 -27.31157 -25.23596 -24.52693 -23.21715 -22.51627 -22.33306 -21.22943 -19.23435 -19.13976 -18.19829 -17.96088 -17.47265 -17.16982 -16.97299 -16.57892 -16.34027 -16.19419 -15.62604 -15.36193 -15.06269 -14.89205 -14.76292 -14.52530 -14.24698 -14.11132 -13.70681 -13.58915 -13.42085 -13.21310 -12.95528 -12.81562 -12.69779 -12.60024 -12.15257 -12.05563 -11.97336 -11.84189 -11.81356 -11.34006 -11.08061 -10.98122 -10.31986 -9.87354 -9.66082 -9.00756 -7.94968 -5.24573 -0.09883 1.32823 1.35119 1.46755 1.48512 1.55868 1.58493 2.05134 2.27281 2.55641 3.23306 3.37200 3.48657 3.53351 3.75412 3.89219 4.03222 4.05654 4.12051 4.19144 4.23870 4.36273 4.39193 4.40689 4.48182 4.54486 4.66651 4.74854 4.79552 4.94525 4.94768 5.00460 5.21962 5.24035 5.25250 5.48315 5.78490 6.08463 6.17787 6.26184 6.39278 6.80390 6.86481 7.32546 8.09463 8.31112 9.28703 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.029682 B = 0.002267 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.106357 B =12345.873191 C =12699.238376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.301 6.301 4 C 0.254 3.746 5 C -0.212 4.212 6 C 0.067 3.933 7 C 0.585 3.415 8 O -0.542 6.542 9 N -0.596 5.596 10 C 0.040 3.960 11 C 0.095 3.905 12 C 0.093 3.907 13 H 0.093 0.907 14 O -0.569 6.569 15 C 0.123 3.877 16 N -0.742 5.742 17 C -0.245 4.245 18 H 0.079 0.921 19 C -0.080 4.080 20 N -0.971 5.971 21 Si 0.976 3.024 22 H -0.263 1.263 23 H -0.296 1.296 24 H -0.292 1.292 25 N -0.436 5.436 26 H 0.460 0.540 27 N -0.328 5.328 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.163 0.837 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.129 0.871 38 H 0.088 0.912 39 H 0.378 0.622 40 H 0.045 0.955 41 H 0.023 0.977 42 H 0.373 0.627 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.390 -19.021 -16.833 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.206 6.206 4 C 0.052 3.948 5 C -0.244 4.244 6 C -0.064 4.064 7 C 0.371 3.629 8 O -0.417 6.417 9 N -0.327 5.327 10 C -0.102 4.102 11 C -0.028 4.028 12 C 0.032 3.968 13 H 0.111 0.889 14 O -0.375 6.375 15 C -0.004 4.004 16 N -0.385 5.385 17 C -0.376 4.376 18 H 0.097 0.903 19 C -0.272 4.272 20 N -0.622 5.622 21 Si 0.805 3.195 22 H -0.187 1.187 23 H -0.224 1.224 24 H -0.219 1.219 25 N -0.165 5.165 26 H 0.318 0.682 27 N -0.171 5.171 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.181 0.819 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.147 0.853 38 H 0.106 0.894 39 H 0.226 0.774 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.205 0.795 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.433 -19.792 -16.569 29.098 hybrid contribution 0.697 1.524 0.561 1.767 sum -12.736 -18.268 -16.008 27.426 Atomic orbital electron populations 1.21828 0.90797 1.04416 1.03463 1.22989 0.96950 0.79859 1.02440 1.86322 1.13334 1.31649 1.89290 1.20311 0.84956 0.91810 0.97752 1.21217 0.90356 0.98654 1.14147 1.21048 0.94876 0.84971 1.05524 1.17146 0.81924 0.86600 0.77185 1.90817 1.82494 1.18380 1.50047 1.47609 1.05854 1.09589 1.69650 1.22615 1.04375 0.79379 1.03849 1.22251 0.91268 0.92930 0.96309 1.22474 0.83734 0.94798 0.95780 0.88915 1.86532 1.40608 1.51777 1.58576 1.21464 0.96713 0.95710 0.86552 1.42488 1.43568 1.48932 1.03471 1.19718 1.11057 1.14454 0.92413 0.90263 1.25644 1.02694 1.03127 0.95762 1.69858 1.45132 1.48172 0.99010 0.85031 0.78305 0.78181 0.77967 1.18708 1.22361 1.21895 1.47359 1.07285 1.02931 1.58886 0.68160 1.77246 0.89013 1.20509 1.30360 0.91695 0.91446 0.87931 0.91337 0.91666 0.81935 0.88181 0.87056 0.90698 0.85307 0.89368 0.77420 0.93687 0.95871 0.79496 0.94086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 71.98 0.74 -0.77 16 2 C 0.05 0.80 6.33 71.98 0.46 1.26 16 3 O -0.30 -6.70 10.22 -93.56 -0.96 -7.66 16 4 C 0.25 6.13 7.85 85.13 0.67 6.80 16 5 C -0.21 -5.38 10.65 22.56 0.24 -5.14 16 6 C 0.07 1.55 6.71 40.68 0.27 1.82 16 7 C 0.59 14.79 7.15 86.59 0.62 15.41 16 8 O -0.54 -17.34 15.34 2.97 0.05 -17.30 16 9 N -0.60 -11.44 2.83 -850.96 -2.41 -13.85 16 10 C 0.04 0.40 8.90 127.77 1.14 1.54 16 11 C 0.10 1.98 5.12 86.38 0.44 2.43 16 12 C 0.09 2.80 3.27 30.59 0.10 2.90 16 13 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 14 O -0.57 -20.85 12.11 -141.87 -1.72 -22.57 16 15 C 0.12 4.58 5.90 86.38 0.51 5.09 16 16 N -0.74 -37.96 5.55 -343.45 -1.91 -39.87 16 17 C -0.24 -13.73 9.99 84.03 0.84 -12.89 16 18 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 19 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 20 N -0.97 -60.98 13.06 21.65 0.28 -60.70 16 21 Si 0.98 46.54 29.55 68.60 2.03 48.56 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 N -0.44 -7.83 6.39 -48.20 -0.31 -8.14 16 26 H 0.46 4.94 5.01 -213.36 -1.07 3.87 16 27 N -0.33 -7.17 12.05 -170.76 -2.06 -9.23 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.16 4.11 8.06 -2.91 -0.02 4.08 16 34 H 0.10 0.37 7.75 -2.39 -0.02 0.36 16 35 H 0.11 0.85 8.02 -2.39 -0.02 0.83 16 36 H 0.07 0.77 5.19 -2.39 -0.01 0.76 16 37 H 0.13 1.77 8.07 -2.39 -0.02 1.75 16 38 H 0.09 2.00 7.41 -2.39 -0.02 1.98 16 39 H 0.38 13.14 8.48 -74.06 -0.63 12.51 16 40 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.37 21.05 7.67 -92.71 -0.71 20.34 16 43 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -78.07 363.00 -1.85 -79.92 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: -1.35 Total: 36.61 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 6.49 Total: 14.23 kcal Atomic # 7 Polarization: -125.39 SS G_CDS: -6.39 Total: -131.79 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -2.63 Total: -47.53 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -78.07 -1.85 -79.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677090635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.651 kcal (2) G-P(sol) polarization free energy of solvation -78.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds