Wall clock time and date at job start Fri Apr 10 2020 18:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99872 * 180.02562 * 12 11 10 14 14 O 1.21590 * 120.00297 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99768 * 180.02562 * 13 12 11 16 16 C 1.47271 * 121.35096 * 179.71761 * 15 13 12 17 17 C 1.53465 * 107.93412 * 118.51287 * 16 15 13 18 18 N 1.45644 * 110.73768 * 46.90977 * 17 16 15 19 19 C 1.46502 * 117.70448 * 157.99837 * 18 17 16 20 20 C 1.50698 * 109.47464 * 269.98320 * 19 18 17 21 21 N 1.34776 * 119.99857 * 179.97438 * 20 19 18 22 22 O 1.21274 * 120.00004 * 0.02562 * 20 19 18 23 23 C 1.33384 * 124.59449 * 337.98437 * 18 17 16 24 24 O 1.21276 * 118.49207 * 184.29741 * 23 18 17 25 25 C 1.47043 * 121.35466 * 0.02562 * 15 13 12 26 26 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 28 28 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 29 29 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 30 30 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 31 31 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 32 32 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 33 33 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 34 34 H 1.09004 * 109.71960 * 238.19660 * 16 15 13 35 35 H 1.09006 * 109.71760 * 358.84383 * 16 15 13 36 36 H 1.08997 * 109.32972 * 286.52726 * 17 16 15 37 37 H 1.08994 * 109.09758 * 167.15139 * 17 16 15 38 38 H 1.09006 * 109.46710 * 29.98316 * 19 18 17 39 39 H 1.09000 * 109.46842 * 149.98257 * 19 18 17 40 40 H 0.96997 * 120.00187 * 0.02562 * 21 20 19 41 41 H 0.97002 * 119.99792 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.56946 * 342.53589 * 25 15 13 43 43 H 1.08998 * 109.57181 * 102.89042 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9827 -7.3713 -0.0019 14 8 0.7873 -7.5935 -0.0020 15 7 2.8586 -8.3958 -0.0020 16 6 2.4006 -9.7954 0.0041 17 6 2.9113 -10.4653 -1.2787 18 7 4.3197 -10.1628 -1.4929 19 6 5.0896 -11.0718 -2.3458 20 6 5.6945 -12.1626 -1.5001 21 7 6.4494 -13.1201 -2.0744 22 8 5.5012 -12.1794 -0.3030 23 6 4.9579 -9.1160 -0.9674 24 8 6.1134 -8.9253 -1.2823 25 6 4.3102 -8.1613 -0.0013 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5566 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8725 -3.6048 0.8878 30 1 2.8712 -3.6040 -0.8921 31 1 0.8543 -5.0449 0.8894 32 1 0.8525 -5.0447 -0.8905 33 1 3.3858 -5.9235 -0.0021 34 1 2.8034 -10.3105 0.8763 35 1 1.3112 -9.8258 0.0290 36 1 2.3333 -10.1039 -2.1292 37 1 2.7852 -11.5445 -1.1919 38 1 4.4306 -11.5144 -3.0929 39 1 5.8836 -10.5164 -2.8449 40 1 6.6037 -13.1068 -3.0319 41 1 6.8385 -13.8224 -1.5301 42 1 4.5146 -7.1359 -0.3091 43 1 4.7068 -8.3297 0.9999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677219150.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:29 Heat of formation + Delta-G solvation = -92.218173 kcal Electronic energy + Delta-G solvation = -25729.152070 eV Core-core repulsion = 21809.725826 eV Total energy + Delta-G solvation = -3919.426244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.34093 -39.97708 -39.12313 -36.81156 -35.42706 -35.10105 -34.15849 -33.31858 -31.41957 -30.30442 -29.30098 -26.97248 -26.23396 -24.35654 -22.83722 -21.55690 -20.75275 -20.39618 -18.99325 -18.45336 -17.89389 -17.69445 -17.34170 -16.42051 -16.32026 -15.95552 -15.76210 -15.40277 -15.15697 -14.68191 -14.42922 -14.41268 -14.14796 -13.99804 -13.69831 -13.15710 -12.98774 -12.57142 -12.32764 -12.24896 -11.81324 -11.77263 -11.72579 -10.90034 -10.78248 -10.69052 -10.64095 -10.57780 -10.19298 -10.09485 -9.86263 -9.44757 -9.28133 -9.11926 -9.05627 -8.63339 -8.36197 -6.00960 -4.03879 2.05121 2.15365 2.26571 2.55967 3.14143 3.20304 3.31875 3.38251 3.41266 3.83243 3.99050 4.33530 4.43199 4.45526 4.50313 4.70572 4.81640 4.88654 4.94985 5.06330 5.33826 5.34883 5.50856 5.65136 5.66685 5.80017 6.04204 6.17033 6.26725 6.46563 6.61398 6.65996 6.78218 6.89735 6.91337 7.01214 7.63200 7.64509 7.76565 7.76992 7.92164 7.97896 8.38760 8.58229 9.02740 9.60252 11.10279 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.028200 B = 0.002245 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.668589 B =12468.867193 C =13164.446195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.134 3.866 12 N -0.739 5.739 13 C 0.710 3.290 14 O -0.584 6.584 15 N -0.639 5.639 16 C 0.118 3.882 17 C 0.102 3.898 18 N -0.583 5.583 19 C 0.084 3.916 20 C 0.502 3.498 21 N -0.855 5.855 22 O -0.533 6.533 23 C 0.521 3.479 24 O -0.543 6.543 25 C 0.104 3.896 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.020 0.980 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.393 0.607 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.402 0.598 41 H 0.402 0.598 42 H 0.115 0.885 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.770 -28.579 -5.943 31.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.160 4.160 11 C 0.011 3.989 12 N -0.395 5.395 13 C 0.412 3.588 14 O -0.461 6.461 15 N -0.380 5.380 16 C -0.006 4.006 17 C -0.022 4.022 18 N -0.315 5.315 19 C -0.043 4.043 20 C 0.285 3.715 21 N -0.420 5.420 22 O -0.408 6.408 23 C 0.309 3.691 24 O -0.420 6.420 25 C -0.022 4.022 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.229 0.771 34 H 0.099 0.901 35 H 0.134 0.866 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.129 0.871 39 H 0.139 0.861 40 H 0.230 0.770 41 H 0.233 0.767 42 H 0.133 0.867 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.024 -28.266 -5.318 30.459 hybrid contribution 1.239 0.597 -0.288 1.405 sum 11.263 -27.669 -5.606 30.395 Atomic orbital electron populations 1.69970 1.06039 1.26664 1.50589 1.25034 0.94872 0.99309 0.95304 0.86578 0.79804 0.83422 0.78082 1.20676 1.21227 1.19893 1.21204 0.93005 0.90929 1.50881 0.92636 1.19025 0.93830 0.90774 0.97708 1.21905 0.99839 0.93281 1.00926 1.21567 0.91248 0.84044 1.02052 1.45572 1.10667 1.04429 1.78810 1.15804 0.84722 0.80584 0.77740 1.90925 1.13484 1.83616 1.58086 1.47375 1.04675 1.06025 1.79943 1.21887 1.02719 0.79453 0.96526 1.21983 0.79790 1.01150 0.99283 1.46789 1.10626 1.24812 1.49248 1.21387 0.98747 0.91110 0.93102 1.21188 0.78382 0.82838 0.89083 1.43826 1.54721 1.30440 1.12969 1.90764 1.59692 1.75128 1.15212 1.20275 0.86572 0.81317 0.80968 1.90750 1.17291 1.73900 1.60011 1.21752 0.80738 0.99883 0.99830 0.92945 0.96238 0.96194 0.92681 0.92725 0.91721 0.91788 0.77136 0.90113 0.86560 0.90611 0.89417 0.87093 0.86109 0.76953 0.76658 0.86672 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.13 2.34 5.67 -4.04 -0.02 2.32 16 12 N -0.74 -10.69 5.46 -65.22 -0.36 -11.05 16 13 C 0.71 10.55 8.34 -86.91 -0.72 9.82 16 14 O -0.58 -10.75 15.82 5.29 0.08 -10.67 16 15 N -0.64 -7.17 2.97 -179.57 -0.53 -7.71 16 16 C 0.12 1.06 6.56 -3.38 -0.02 1.04 16 17 C 0.10 0.73 6.51 -4.26 -0.03 0.70 16 18 N -0.58 -5.12 2.30 -175.95 -0.40 -5.53 16 19 C 0.08 0.52 5.68 -5.19 -0.03 0.49 16 20 C 0.50 3.86 8.15 -10.99 -0.09 3.77 16 21 N -0.85 -3.08 8.87 31.22 0.28 -2.80 16 22 O -0.53 -6.54 17.25 5.56 0.10 -6.45 16 23 C 0.52 5.83 7.55 -11.71 -0.09 5.74 16 24 O -0.54 -7.55 16.18 5.56 0.09 -7.46 16 25 C 0.10 1.04 6.43 -5.01 -0.03 1.00 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.39 4.73 6.11 -40.82 -0.25 4.48 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.12 1.11 7.06 -51.93 -0.37 0.75 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.47 8.07 -51.93 -0.42 0.05 16 38 H 0.11 0.29 8.01 -51.93 -0.42 -0.12 16 39 H 0.12 0.79 7.10 -51.93 -0.37 0.42 16 40 H 0.40 0.14 8.83 -40.82 -0.36 -0.22 16 41 H 0.40 1.28 8.93 -40.82 -0.36 0.91 16 42 H 0.12 1.06 5.95 -51.93 -0.31 0.75 16 43 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 362.11 15.07 5.46 5.46 Total: -1.00 -38.54 362.11 -7.50 -46.04 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.20 Total: 0.18 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -1.73 Total: 9.50 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.28 Total: -53.14 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: 0.27 Total: -24.57 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.54 -7.50 -46.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677219150.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.173 kcal (2) G-P(sol) polarization free energy of solvation -38.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds