Wall clock time and date at job start Fri Apr 10 2020 18:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99872 * 180.02562 * 12 11 10 14 14 O 1.21590 * 120.00297 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99768 * 180.02562 * 13 12 11 16 16 C 1.47271 * 121.35096 * 179.71761 * 15 13 12 17 17 C 1.53465 * 107.93412 * 118.51287 * 16 15 13 18 18 N 1.45644 * 110.73768 * 46.90977 * 17 16 15 19 19 C 1.46502 * 117.70448 * 157.99837 * 18 17 16 20 20 C 1.50698 * 109.47464 * 269.98320 * 19 18 17 21 21 N 1.34776 * 119.99857 * 179.97438 * 20 19 18 22 22 O 1.21274 * 120.00004 * 0.02562 * 20 19 18 23 23 C 1.33384 * 124.59449 * 337.98437 * 18 17 16 24 24 O 1.21276 * 118.49207 * 184.29741 * 23 18 17 25 25 C 1.47043 * 121.35466 * 0.02562 * 15 13 12 26 26 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 28 28 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 29 29 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 30 30 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 31 31 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 32 32 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 33 33 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 34 34 H 1.09004 * 109.71960 * 238.19660 * 16 15 13 35 35 H 1.09006 * 109.71760 * 358.84383 * 16 15 13 36 36 H 1.08997 * 109.32972 * 286.52726 * 17 16 15 37 37 H 1.08994 * 109.09758 * 167.15139 * 17 16 15 38 38 H 1.09006 * 109.46710 * 29.98316 * 19 18 17 39 39 H 1.09000 * 109.46842 * 149.98257 * 19 18 17 40 40 H 0.96997 * 120.00187 * 0.02562 * 21 20 19 41 41 H 0.97002 * 119.99792 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.56946 * 342.53589 * 25 15 13 43 43 H 1.08998 * 109.57181 * 102.89042 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9827 -7.3713 -0.0019 14 8 0.7873 -7.5935 -0.0020 15 7 2.8586 -8.3958 -0.0020 16 6 2.4006 -9.7954 0.0041 17 6 2.9113 -10.4653 -1.2787 18 7 4.3197 -10.1628 -1.4929 19 6 5.0896 -11.0718 -2.3458 20 6 5.6945 -12.1626 -1.5001 21 7 6.4494 -13.1201 -2.0744 22 8 5.5012 -12.1794 -0.3030 23 6 4.9579 -9.1160 -0.9674 24 8 6.1134 -8.9253 -1.2823 25 6 4.3102 -8.1613 -0.0013 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5566 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8725 -3.6048 0.8878 30 1 2.8712 -3.6040 -0.8921 31 1 0.8543 -5.0449 0.8894 32 1 0.8525 -5.0447 -0.8905 33 1 3.3858 -5.9235 -0.0021 34 1 2.8034 -10.3105 0.8763 35 1 1.3112 -9.8258 0.0290 36 1 2.3333 -10.1039 -2.1292 37 1 2.7852 -11.5445 -1.1919 38 1 4.4306 -11.5144 -3.0929 39 1 5.8836 -10.5164 -2.8449 40 1 6.6037 -13.1068 -3.0319 41 1 6.8385 -13.8224 -1.5301 42 1 4.5146 -7.1359 -0.3091 43 1 4.7068 -8.3297 0.9999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677219150.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:28 Heat of formation + Delta-G solvation = -123.528486 kcal Electronic energy + Delta-G solvation = -25730.509787 eV Core-core repulsion = 21809.725826 eV Total energy + Delta-G solvation = -3920.783961 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.15447 -40.94246 -39.89385 -37.75648 -36.87600 -35.99845 -35.16450 -34.66009 -33.05235 -31.22990 -30.08092 -28.52581 -27.17189 -25.48715 -24.33792 -22.35720 -22.17239 -21.47603 -19.92571 -19.33343 -18.66897 -18.49573 -18.28931 -17.93651 -17.21882 -16.97866 -16.63357 -16.45551 -16.41345 -15.88521 -15.66732 -15.49123 -15.34432 -14.70287 -14.67086 -14.27204 -14.06476 -13.82290 -13.63641 -13.44864 -13.19362 -12.95092 -12.74088 -12.56093 -12.46493 -12.34819 -11.80608 -11.66023 -11.48401 -11.35002 -11.22986 -11.08428 -10.65222 -10.53565 -10.29298 -9.93795 -9.65876 -8.18017 -6.28980 1.25689 1.38184 1.42897 1.43821 1.54877 1.60410 1.77617 2.03886 2.42728 2.69045 2.76147 3.15713 3.26537 3.67525 3.88516 4.02211 4.12635 4.17471 4.18313 4.25572 4.33403 4.34773 4.44813 4.57939 4.62575 4.84883 4.97554 4.98094 5.01581 5.17400 5.26628 5.44030 5.54384 5.70286 5.73529 5.86427 5.88874 6.16759 6.24553 6.43806 6.76130 6.88110 6.90406 7.32975 7.40143 7.42447 8.93933 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.028200 B = 0.002245 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.668589 B =12468.867193 C =13164.446195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.024 3.976 10 C -0.103 4.103 11 C 0.150 3.850 12 N -0.732 5.732 13 C 0.710 3.290 14 O -0.622 6.622 15 N -0.630 5.630 16 C 0.113 3.887 17 C 0.106 3.894 18 N -0.582 5.582 19 C 0.081 3.919 20 C 0.498 3.502 21 N -0.834 5.834 22 O -0.586 6.586 23 C 0.515 3.485 24 O -0.577 6.577 25 C 0.103 3.897 26 H 0.263 0.737 27 H -0.006 1.006 28 H -0.006 1.006 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.407 0.593 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.153 0.847 39 H 0.119 0.881 40 H 0.420 0.580 41 H 0.407 0.593 42 H 0.123 0.877 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.569 -29.594 -6.859 32.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.578 4.578 8 H 0.083 0.917 9 C -0.014 4.014 10 C -0.141 4.141 11 C 0.025 3.975 12 N -0.388 5.388 13 C 0.411 3.589 14 O -0.503 6.503 15 N -0.369 5.369 16 C -0.010 4.010 17 C -0.017 4.017 18 N -0.312 5.312 19 C -0.045 4.045 20 C 0.282 3.718 21 N -0.399 5.399 22 O -0.465 6.465 23 C 0.303 3.697 24 O -0.456 6.456 25 C -0.023 4.023 26 H 0.072 0.928 27 H 0.012 0.988 28 H 0.012 0.988 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.245 0.755 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.171 0.829 39 H 0.137 0.863 40 H 0.251 0.749 41 H 0.238 0.762 42 H 0.141 0.859 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.883 -29.360 -6.288 32.292 hybrid contribution 0.687 0.787 -0.039 1.046 sum 12.570 -28.573 -6.327 31.850 Atomic orbital electron populations 1.70111 1.07846 1.27731 1.51712 1.26012 0.95771 1.03483 0.94879 0.85429 0.78665 0.78402 0.78422 1.19847 1.21048 1.18561 1.21680 0.93715 0.92061 1.50356 0.91656 1.18935 0.94414 0.92769 0.95236 1.21606 0.98517 0.91885 1.02053 1.21125 0.91198 0.84268 1.00879 1.45255 1.10881 1.03805 1.78880 1.15861 0.84550 0.80988 0.77464 1.90902 1.15337 1.84230 1.59830 1.47324 1.04867 1.06063 1.78664 1.22063 1.02555 0.78264 0.98083 1.22049 0.78895 1.02363 0.98425 1.46886 1.11263 1.24390 1.48685 1.21648 0.99419 0.90382 0.93080 1.21443 0.78400 0.83458 0.88485 1.43678 1.52918 1.29246 1.14066 1.90744 1.61913 1.76581 1.17309 1.20399 0.86277 0.81989 0.81052 1.90732 1.18593 1.74960 1.61353 1.21873 0.79564 1.00298 1.00536 0.92842 0.98773 0.98759 0.91453 0.91501 0.93044 0.93042 0.75489 0.89401 0.87172 0.89695 0.87014 0.82923 0.86265 0.74854 0.76173 0.85939 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 8 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.10 -3.94 5.27 30.59 0.16 -3.78 16 11 C 0.15 5.25 5.67 86.38 0.49 5.74 16 12 N -0.73 -20.52 5.46 -478.52 -2.61 -23.14 16 13 C 0.71 20.64 8.34 179.05 1.49 22.13 16 14 O -0.62 -23.00 15.82 -4.00 -0.06 -23.06 16 15 N -0.63 -13.40 2.97 -840.29 -2.50 -15.90 16 16 C 0.11 1.89 6.56 86.39 0.57 2.46 16 17 C 0.11 1.28 6.51 86.70 0.56 1.84 16 18 N -0.58 -9.09 2.30 -829.76 -1.91 -11.00 16 19 C 0.08 0.81 5.68 85.63 0.49 1.30 16 20 C 0.50 6.76 8.15 87.66 0.71 7.47 16 21 N -0.83 -4.16 8.87 -173.54 -1.54 -5.70 16 22 O -0.59 -13.84 17.25 -3.01 -0.05 -13.89 16 23 C 0.51 10.87 7.55 87.80 0.66 11.53 16 24 O -0.58 -15.57 16.18 -3.02 -0.05 -15.62 16 25 C 0.10 1.91 6.43 85.46 0.55 2.46 16 26 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 27 H -0.01 -0.35 8.14 -2.39 -0.02 -0.36 16 28 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.41 9.13 6.11 -92.71 -0.57 8.56 16 34 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.11 2.03 7.06 -2.38 -0.02 2.02 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.11 0.88 8.07 -2.39 -0.02 0.86 16 38 H 0.15 0.20 8.01 -2.38 -0.02 0.18 16 39 H 0.12 1.31 7.10 -2.39 -0.02 1.30 16 40 H 0.42 -0.88 8.83 -92.71 -0.82 -1.70 16 41 H 0.41 1.82 8.93 -92.71 -0.83 0.99 16 42 H 0.12 2.06 5.95 -2.39 -0.01 2.04 16 43 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -84.97 362.11 -1.02 -86.00 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -1.15 Total: 10.12 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 6.53 Total: 22.87 kcal Atomic # 7 Polarization: -104.17 SS G_CDS: -8.27 Total: -112.44 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -0.16 Total: -52.57 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -84.97 -1.02 -86.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677219150.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.532 kcal (2) G-P(sol) polarization free energy of solvation -84.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds