Wall clock time and date at job start Fri Apr 10 2020 18:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99735 * 2 1 4 4 H 1.48504 * 109.47212 * 274.13072 * 3 2 1 5 5 H 1.48495 * 109.47260 * 34.13317 * 3 2 1 6 6 H 1.48504 * 109.46764 * 154.13068 * 3 2 1 7 7 C 1.38806 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00047 * 197.11864 * 7 2 1 9 9 N 1.36938 * 120.00374 * 17.10934 * 7 2 1 10 10 C 1.47075 * 120.88443 * 206.92027 * 9 7 2 11 11 C 1.53240 * 108.51844 * 231.20760 * 10 9 7 12 12 N 1.46903 * 109.34059 * 306.16522 * 11 10 9 13 13 C 1.46902 * 111.00061 * 187.25422 * 12 11 10 14 14 C 1.53001 * 109.46949 * 170.00348 * 13 12 11 15 15 N 1.46501 * 109.46798 * 180.02562 * 14 13 12 16 16 C 1.34775 * 119.99589 * 180.02562 * 15 14 13 17 17 O 1.21275 * 120.00289 * 359.97438 * 16 15 14 18 18 C 1.50707 * 119.99799 * 179.72636 * 16 15 14 19 19 H 1.09000 * 110.50381 * 38.97873 * 18 16 15 20 20 C 1.54089 * 110.56357 * 276.08344 * 18 16 15 21 21 O 1.45703 * 104.00883 * 241.42749 * 20 18 16 22 22 C 1.33770 * 109.47567 * 359.97438 * 21 20 18 23 23 O 1.21506 * 123.06980 * 180.02562 * 22 21 20 24 24 N 1.34002 * 113.85557 * 0.02562 * 22 21 20 25 25 C 1.46901 * 111.26385 * 63.10668 * 12 11 10 26 26 C 1.47089 * 120.87686 * 26.93994 * 9 7 2 27 27 H 0.96999 * 119.99717 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.63109 * 111.50119 * 10 9 7 29 29 H 1.09003 * 109.63198 * 350.91463 * 10 9 7 30 30 H 1.09007 * 109.49097 * 186.21055 * 11 10 9 31 31 H 1.08994 * 109.52020 * 66.14349 * 11 10 9 32 32 H 1.09001 * 109.47164 * 50.00193 * 13 12 11 33 33 H 1.09000 * 109.47088 * 290.00398 * 13 12 11 34 34 H 1.09000 * 109.47032 * 60.00396 * 14 13 12 35 35 H 1.09000 * 109.47266 * 299.99940 * 14 13 12 36 36 H 0.96996 * 120.00103 * 359.97438 * 15 14 13 37 37 H 1.09004 * 110.52284 * 0.06040 * 20 18 16 38 38 H 1.08999 * 110.52113 * 122.79176 * 20 18 16 39 39 H 0.97000 * 125.55658 * 180.02562 * 24 22 21 40 40 H 1.09000 * 109.49190 * 56.85750 * 25 12 11 41 41 H 1.09001 * 109.48898 * 176.92923 * 25 12 11 42 42 H 1.08996 * 109.62566 * 248.49969 * 26 9 7 43 43 H 1.08997 * 109.62540 * 9.08495 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4104 2.0969 -1.3965 5 1 1.4941 2.6259 0.7856 6 1 3.5887 1.4165 0.6109 7 6 2.0103 -1.2021 -0.0005 8 1 3.0545 -1.2229 0.2748 9 7 1.3712 -2.3617 -0.3499 10 6 1.8263 -3.6604 0.1689 11 6 2.0049 -4.6207 -1.0119 12 7 0.7626 -4.6654 -1.7948 13 6 0.8322 -5.7014 -2.8339 14 6 -0.5512 -5.8900 -3.4595 15 7 -0.4819 -6.9236 -4.4954 16 6 -1.5889 -7.2602 -5.1866 17 8 -2.6424 -6.7077 -4.9508 18 6 -1.5163 -8.3191 -6.2565 19 1 -0.8589 -9.1312 -5.9460 20 6 -1.0377 -7.7105 -7.5888 21 8 -2.1495 -7.9416 -8.5017 22 6 -3.1334 -8.5761 -7.8546 23 8 -4.1801 -8.8915 -8.3849 24 7 -2.8591 -8.8321 -6.5682 25 6 0.4536 -3.3535 -2.3791 26 6 0.2114 -2.3413 -1.2544 27 1 -0.4850 0.8401 0.0004 28 1 1.0821 -4.0610 0.8572 29 1 2.7777 -3.5352 0.6860 30 1 2.2351 -5.6183 -0.6378 31 1 2.8211 -4.2722 -1.6445 32 1 1.1610 -6.6407 -2.3892 33 1 1.5408 -5.3965 -3.6041 34 1 -0.8799 -4.9508 -3.9043 35 1 -1.2597 -6.1950 -2.6893 36 1 0.3608 -7.3652 -4.6843 37 1 -0.8515 -6.6424 -7.4760 38 1 -0.1412 -8.2203 -7.9415 39 1 -3.4496 -9.2828 -5.9444 40 1 1.2914 -3.0222 -2.9926 41 1 -0.4411 -3.4321 -2.9966 42 1 -0.6879 -2.6151 -0.7028 43 1 0.0952 -1.3439 -1.6783 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690072108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:48 Heat of formation + Delta-G solvation = -62.331570 kcal Electronic energy + Delta-G solvation = -25809.175153 eV Core-core repulsion = 21891.044889 eV Total energy + Delta-G solvation = -3918.130264 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.24214 -39.87585 -38.33160 -37.51603 -35.73706 -35.09231 -34.15360 -31.66350 -30.61682 -30.02948 -28.81652 -26.22714 -24.91060 -23.33746 -22.84899 -22.66878 -21.52018 -21.15361 -19.20373 -18.68449 -18.40782 -17.50822 -16.93589 -16.56061 -16.14692 -15.78263 -15.29679 -14.82896 -14.79003 -14.73219 -14.46008 -14.21241 -14.06307 -13.85643 -13.61813 -13.50235 -13.06370 -12.92198 -12.59829 -11.79603 -11.52326 -11.46270 -11.37924 -11.13230 -11.11038 -10.80200 -10.79189 -10.50523 -10.38532 -10.12216 -9.82231 -9.78711 -9.68563 -9.40453 -8.55749 -8.00379 -6.72269 -5.82440 -3.24463 1.91843 2.05119 2.29731 2.58269 3.08200 3.34566 3.41675 3.43324 3.47896 3.90118 4.03523 4.31156 4.45789 4.46597 4.61942 4.79896 4.84226 4.99580 5.33303 5.34749 5.35696 5.68963 5.77639 5.80513 5.86604 5.98115 6.05661 6.12542 6.23493 6.26700 6.45810 6.60112 6.72499 6.85056 6.96124 7.15782 7.42631 7.54698 7.61129 7.62353 7.69479 7.76346 8.38905 9.16501 9.79678 10.37933 11.26429 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.027602 B = 0.002280 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.181948 B =12276.429774 C =12721.309043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.148 3.852 11 C 0.046 3.954 12 N -0.530 5.530 13 C 0.045 3.955 14 C 0.119 3.881 15 N -0.720 5.720 16 C 0.499 3.501 17 O -0.513 6.513 18 C 0.077 3.923 19 H 0.128 0.872 20 C 0.055 3.945 21 O -0.322 6.322 22 C 0.652 3.348 23 O -0.516 6.516 24 N -0.710 5.710 25 C 0.031 3.969 26 C 0.178 3.822 27 H 0.254 0.746 28 H 0.026 0.974 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.029 0.971 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.401 0.599 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.441 0.559 40 H 0.027 0.973 41 H 0.064 0.936 42 H 0.028 0.972 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.611 -19.345 -11.692 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.021 3.979 11 C -0.083 4.083 12 N -0.255 5.255 13 C -0.084 4.084 14 C -0.004 4.004 15 N -0.373 5.373 16 C 0.281 3.719 17 O -0.386 6.386 18 C -0.034 4.034 19 H 0.145 0.855 20 C -0.021 4.021 21 O -0.232 6.232 22 C 0.404 3.596 23 O -0.400 6.400 24 N -0.383 5.383 25 C -0.098 4.098 26 C 0.052 3.948 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.235 0.765 37 H 0.129 0.871 38 H 0.140 0.860 39 H 0.285 0.715 40 H 0.045 0.955 41 H 0.082 0.918 42 H 0.046 0.954 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.909 -18.878 -11.809 22.349 hybrid contribution 1.396 0.698 -0.081 1.563 sum 3.305 -18.181 -11.890 21.974 Atomic orbital electron populations 1.70033 1.05213 1.25561 1.53819 1.25049 0.95318 0.98424 1.00903 0.86267 0.79125 0.83736 0.77588 1.21506 1.21712 1.20419 1.19196 0.92608 0.84773 1.41800 0.91600 1.44132 1.34690 1.01316 1.51759 1.20981 0.97917 0.86487 0.92499 1.22634 0.89246 0.99567 0.96839 1.61879 1.35173 1.05740 1.22696 1.22194 0.94722 0.97124 0.94389 1.21489 0.98572 0.90724 0.89655 1.45928 1.11371 1.41395 1.38590 1.20502 0.84595 0.84038 0.82798 1.90826 1.29018 1.52643 1.66161 1.22315 0.87396 0.97650 0.95993 0.85467 1.24263 0.89419 1.04060 0.84353 1.87316 1.27022 1.72048 1.36783 1.18410 0.83358 0.76897 0.80923 1.91104 1.22233 1.56184 1.70452 1.45664 1.18420 1.62387 1.11863 1.23012 0.98810 0.89196 0.98789 1.20860 0.89140 0.96523 0.88323 0.93545 0.95580 0.92495 0.91942 0.95283 0.90763 0.94859 0.90702 0.90079 0.76485 0.87054 0.86043 0.71490 0.95514 0.91817 0.95416 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.19 55.49 0.62 -25.32 16 2 C 0.00 0.05 4.93 -17.43 -0.09 -0.04 16 3 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.25 -6.84 9.63 -15.06 -0.14 -6.99 16 8 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 9 N -0.60 -14.64 3.04 -172.01 -0.52 -15.16 16 10 C 0.15 2.99 6.69 -3.60 -0.02 2.96 16 11 C 0.05 0.75 5.62 -3.70 -0.02 0.73 16 12 N -0.53 -8.33 4.63 -234.31 -1.08 -9.41 16 13 C 0.04 0.48 5.08 -3.82 -0.02 0.46 16 14 C 0.12 1.25 5.61 -4.04 -0.02 1.23 16 15 N -0.72 -4.80 5.56 -60.29 -0.33 -5.13 16 16 C 0.50 4.15 6.93 -10.98 -0.08 4.07 16 17 O -0.51 -7.07 16.60 5.56 0.09 -6.98 16 18 C 0.08 0.37 4.17 -68.19 -0.28 0.08 16 19 H 0.13 0.08 8.14 -51.93 -0.42 -0.35 16 20 C 0.05 0.24 7.87 37.73 0.30 0.53 16 21 O -0.32 -3.08 11.09 -37.83 -0.42 -3.50 16 22 C 0.65 7.35 9.16 53.71 0.49 7.84 16 23 O -0.52 -7.96 18.04 -19.11 -0.34 -8.31 16 24 N -0.71 -5.49 5.66 -59.36 -0.34 -5.83 16 25 C 0.03 0.56 5.46 -3.70 -0.02 0.54 16 26 C 0.18 4.16 5.42 -3.60 -0.02 4.14 16 27 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.10 7.95 -51.93 -0.41 0.69 16 30 H 0.06 0.83 7.99 -51.93 -0.41 0.41 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.67 7.97 -51.93 -0.41 0.26 16 33 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.07 0.94 6.40 -51.93 -0.33 0.61 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.40 1.16 8.47 -40.82 -0.35 0.81 16 37 H 0.11 0.46 7.72 -51.93 -0.40 0.06 16 38 H 0.12 0.05 8.14 -51.93 -0.42 -0.37 16 39 H 0.44 2.93 8.96 -40.82 -0.37 2.56 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 1.06 6.16 -51.93 -0.32 0.74 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 2.31 6.15 -51.93 -0.32 1.99 16 LS Contribution 352.35 15.07 5.31 5.31 Total: -1.00 -36.68 352.35 -8.23 -44.91 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.26 Total: -2.47 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: 0.07 Total: 15.57 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -1.66 Total: -60.86 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.67 Total: -18.78 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.68 -8.23 -44.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690072108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.418 kcal (2) G-P(sol) polarization free energy of solvation -36.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds