Wall clock time and date at job start Fri Apr 10 2020 18:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99727 * 2 1 4 4 H 1.48495 * 109.47079 * 269.99938 * 3 2 1 5 5 H 1.48506 * 109.46972 * 29.99882 * 3 2 1 6 6 H 1.48494 * 109.46926 * 149.99860 * 3 2 1 7 7 C 1.37875 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00043 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99425 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46577 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46584 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.46962 * 110.99617 * 190.39514 * 12 11 10 14 14 C 1.53483 * 109.75636 * 164.91698 * 13 12 11 15 15 N 1.46260 * 108.14175 * 49.61569 * 14 13 12 16 16 C 1.36537 * 123.87803 * 343.77202 * 15 14 13 17 17 N 1.29741 * 107.44641 * 179.67022 * 16 15 14 18 18 N 1.28942 * 109.86510 * 0.15550 * 17 16 15 19 19 C 1.31853 * 109.80565 * 359.94181 * 18 17 16 20 20 C 1.47939 * 126.65406 * 179.97438 * 19 18 17 21 21 C 1.39527 * 120.13870 * 16.66199 * 20 19 18 22 22 C 1.37976 * 119.85499 * 179.72533 * 21 20 19 23 23 C 1.38346 * 120.13877 * 0.56663 * 22 21 20 24 24 C 1.38338 * 120.28445 * 359.70037 * 23 22 21 25 25 C 1.37973 * 120.14014 * 0.02562 * 24 23 22 26 26 C 1.47388 * 110.99995 * 66.05000 * 12 11 10 27 27 H 0.96996 * 119.99815 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47144 * 60.00280 * 9 7 2 29 29 H 1.08993 * 109.47291 * 299.99651 * 9 7 2 30 30 H 1.09001 * 109.46865 * 60.00463 * 10 9 7 31 31 H 1.08993 * 109.47313 * 299.99991 * 10 9 7 32 32 H 1.08996 * 109.47862 * 300.00088 * 11 10 9 33 33 H 1.09005 * 109.47549 * 60.00676 * 11 10 9 34 34 H 1.08993 * 109.42240 * 285.00396 * 13 12 11 35 35 H 1.08998 * 109.42438 * 44.83287 * 13 12 11 36 36 H 1.09008 * 109.74409 * 289.95004 * 14 13 12 37 37 H 1.08999 * 109.75791 * 169.29571 * 14 13 12 38 38 H 1.08000 * 120.06725 * 359.97438 * 21 20 19 39 39 H 1.08000 * 119.92767 * 180.29254 * 22 21 20 40 40 H 1.08000 * 119.85672 * 179.72981 * 23 22 21 41 41 H 1.08006 * 119.93361 * 180.02562 * 24 23 22 42 42 H 1.08006 * 120.06985 * 180.02562 * 25 24 23 43 43 H 1.08999 * 109.75849 * 293.99442 * 26 12 11 44 44 H 1.08999 * 109.75811 * 54.69360 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5516 -2.6363 -0.0001 12 7 6.0414 -4.0214 -0.0009 13 6 7.4892 -4.0681 0.2466 14 6 7.9071 -5.4988 0.6128 15 7 7.3445 -6.4072 -0.3859 16 6 6.3412 -6.0652 -1.2465 17 7 6.0974 -7.0997 -1.9906 18 7 6.8753 -8.0724 -1.6571 19 6 7.6640 -7.6955 -0.6699 20 6 8.6973 -8.5170 -0.0021 21 6 9.1605 -9.6865 -0.6057 22 6 10.1285 -10.4453 0.0197 23 6 10.6311 -10.0548 1.2480 24 6 10.1720 -8.8992 1.8543 25 6 9.2084 -8.1287 1.2367 26 6 5.6908 -4.7049 -1.2587 27 1 -0.4850 0.8400 -0.0004 28 1 3.8746 -0.6807 0.8905 29 1 3.8753 -0.6795 -0.8894 30 1 3.6587 -3.1500 -0.8904 31 1 3.6580 -3.1505 0.8896 32 1 5.9150 -2.1224 -0.8900 33 1 5.9150 -2.1226 0.8900 34 1 8.0208 -3.7539 -0.6515 35 1 7.7384 -3.3963 1.0680 36 1 7.5220 -5.7536 1.6003 37 1 8.9943 -5.5771 0.6105 38 1 8.7651 -9.9950 -1.5622 39 1 10.4913 -11.3483 -0.4487 40 1 11.3856 -10.6545 1.7355 41 1 10.5686 -8.5994 2.8131 42 1 8.8510 -7.2265 1.7108 43 1 4.6086 -4.8145 -1.3293 44 1 6.0586 -4.1274 -2.1068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076089652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:23 Heat of formation + Delta-G solvation = 109.561049 kcal Electronic energy + Delta-G solvation = -24730.561948 eV Core-core repulsion = 21263.027522 eV Total energy + Delta-G solvation = -3467.534426 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.165 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.28611 -39.39914 -38.54967 -35.40525 -33.81400 -32.72254 -31.58537 -31.31738 -30.85663 -29.41178 -27.37250 -25.62379 -24.18083 -23.78497 -22.68701 -21.92213 -21.07175 -20.13663 -19.89464 -17.82593 -16.93042 -16.89918 -16.73993 -15.97814 -15.66990 -15.36607 -15.09609 -14.72229 -14.28101 -14.17487 -14.06470 -13.85019 -13.64625 -13.25867 -12.99045 -12.75732 -12.43173 -12.09519 -11.99762 -11.80391 -11.69918 -11.51436 -11.44858 -11.07006 -10.82861 -10.49674 -10.40908 -10.03792 -9.99804 -9.78716 -9.67076 -9.40451 -9.21914 -8.73786 -8.56069 -8.46529 -6.05694 -4.04100 0.46601 0.95254 1.85371 2.16556 2.71750 3.27814 3.35378 3.37289 3.38384 3.47391 3.81461 4.05524 4.10811 4.39081 4.42471 4.50463 4.56690 4.61966 4.66968 4.85902 4.97290 5.04029 5.16739 5.18848 5.26398 5.28014 5.36424 5.39880 5.53334 5.57342 5.64280 5.67588 5.84658 5.95196 6.01649 6.06825 6.10297 6.32461 6.37868 6.46598 6.62826 6.67924 6.87220 6.89740 7.26025 7.37250 7.76772 8.52356 8.56483 8.99984 9.56173 11.07780 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.032511 B = 0.002357 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.041090 B =11876.034431 C =12341.654838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.101 4.101 11 C 0.057 3.943 12 N -0.541 5.541 13 C 0.036 3.964 14 C 0.107 3.893 15 N -0.466 5.466 16 C 0.197 3.803 17 N -0.284 5.284 18 N -0.282 5.282 19 C 0.214 3.786 20 C -0.011 4.011 21 C -0.077 4.077 22 C -0.118 4.118 23 C -0.110 4.110 24 C -0.117 4.117 25 C -0.113 4.113 26 C 0.138 3.862 27 H 0.263 0.737 28 H 0.016 0.984 29 H 0.010 0.990 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.963 -15.848 3.466 30.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.091 0.909 9 C -0.050 4.050 10 C -0.139 4.139 11 C -0.070 4.070 12 N -0.266 5.266 13 C -0.093 4.093 14 C -0.016 4.016 15 N -0.157 5.157 16 C -0.070 4.070 17 N -0.124 5.124 18 N -0.123 5.123 19 C -0.050 4.050 20 C -0.013 4.013 21 C -0.097 4.097 22 C -0.136 4.136 23 C -0.128 4.128 24 C -0.135 4.135 25 C -0.133 4.133 26 C 0.008 3.992 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.028 0.972 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.155 0.845 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 24.924 -16.802 2.786 30.187 hybrid contribution 1.262 2.152 0.409 2.528 sum 26.186 -14.649 3.195 30.175 Atomic orbital electron populations 1.69919 1.06294 1.26866 1.51065 1.25054 0.94744 0.99171 0.94644 0.86769 0.80279 0.83701 0.78428 1.20356 1.21413 1.19108 1.21120 0.89405 0.94513 1.50766 0.90949 1.19543 0.97340 0.91971 0.96148 1.21523 0.90289 0.99987 1.02067 1.22419 0.98639 0.84877 1.01028 1.62163 1.11987 1.18989 1.33502 1.22489 0.89659 0.94657 1.02489 1.22344 0.99166 0.88517 0.91531 1.46250 1.29134 1.11084 1.29260 1.24922 0.91514 0.99284 0.91317 1.73965 1.19583 0.96548 1.22285 1.74821 1.05173 1.21174 1.11164 1.22568 1.00521 0.83440 0.98491 1.17482 0.94679 0.94797 0.94372 1.21244 0.95459 0.92707 1.00242 1.21157 0.96892 0.99974 0.95528 1.21329 0.99567 0.96545 0.95384 1.21052 0.97131 0.95139 1.00137 1.21368 0.97334 1.00471 0.94093 1.20795 1.01964 0.84837 0.91608 0.92733 0.96619 0.97193 0.92542 0.91672 0.94417 0.90326 0.93350 0.87649 0.88261 0.88331 0.84541 0.85200 0.85587 0.85345 0.85643 0.85879 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 2 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.52 -14.57 9.66 -34.44 -0.33 -14.91 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.39 16 10 C -0.10 -1.84 5.08 -26.73 -0.14 -1.97 16 11 C 0.06 0.78 4.96 -3.82 -0.02 0.76 16 12 N -0.54 -6.67 4.65 -235.23 -1.09 -7.76 16 13 C 0.04 0.32 5.55 -3.54 -0.02 0.30 16 14 C 0.11 0.90 5.36 -3.92 -0.02 0.88 16 15 N -0.47 -5.75 3.17 -111.07 -0.35 -6.10 16 16 C 0.20 2.86 7.89 -154.62 -1.22 1.64 16 17 N -0.28 -4.81 12.18 32.89 0.40 -4.41 16 18 N -0.28 -4.57 12.05 32.36 0.39 -4.18 16 19 C 0.21 2.85 7.74 -154.95 -1.20 1.65 16 20 C -0.01 -0.11 5.87 -104.97 -0.62 -0.73 16 21 C -0.08 -0.71 9.71 -39.20 -0.38 -1.09 16 22 C -0.12 -0.82 10.03 -39.64 -0.40 -1.21 16 23 C -0.11 -0.67 10.04 -39.50 -0.40 -1.07 16 24 C -0.12 -0.75 10.03 -39.64 -0.40 -1.15 16 25 C -0.11 -0.91 9.07 -39.20 -0.36 -1.27 16 26 C 0.14 1.81 5.47 -4.67 -0.03 1.79 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 28 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 29 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 30 H 0.06 1.04 6.69 -51.93 -0.35 0.69 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.08 1.01 7.86 -51.93 -0.41 0.60 16 34 H 0.05 0.43 8.07 -51.93 -0.42 0.01 16 35 H 0.11 0.73 7.82 -51.93 -0.41 0.33 16 36 H 0.10 0.75 7.55 -51.92 -0.39 0.36 16 37 H 0.10 0.58 7.28 -51.93 -0.38 0.20 16 38 H 0.14 1.29 7.96 -52.49 -0.42 0.87 16 39 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 40 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 41 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 42 H 0.13 0.83 5.02 -52.48 -0.26 0.57 16 43 H 0.12 1.74 6.79 -51.93 -0.35 1.39 16 44 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 LS Contribution 354.80 15.07 5.35 5.35 Total: -1.00 -34.21 354.80 -11.20 -45.41 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -6.27 Total: -2.99 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -5.73 Total: -14.98 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.12 Total: -49.42 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.21 -11.20 -45.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076089652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.969 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds