Wall clock time and date at job start Fri Apr 10 2020 18:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99727 * 2 1 4 4 H 1.48495 * 109.47079 * 269.99938 * 3 2 1 5 5 H 1.48506 * 109.46972 * 29.99882 * 3 2 1 6 6 H 1.48494 * 109.46926 * 149.99860 * 3 2 1 7 7 C 1.37875 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00043 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99425 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46577 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46584 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.46962 * 110.99617 * 190.39514 * 12 11 10 14 14 C 1.53483 * 109.75636 * 164.91698 * 13 12 11 15 15 N 1.46260 * 108.14175 * 49.61569 * 14 13 12 16 16 C 1.36537 * 123.87803 * 343.77202 * 15 14 13 17 17 N 1.29741 * 107.44641 * 179.67022 * 16 15 14 18 18 N 1.28942 * 109.86510 * 0.15550 * 17 16 15 19 19 C 1.31853 * 109.80565 * 359.94181 * 18 17 16 20 20 C 1.47939 * 126.65406 * 179.97438 * 19 18 17 21 21 C 1.39527 * 120.13870 * 16.66199 * 20 19 18 22 22 C 1.37976 * 119.85499 * 179.72533 * 21 20 19 23 23 C 1.38346 * 120.13877 * 0.56663 * 22 21 20 24 24 C 1.38338 * 120.28445 * 359.70037 * 23 22 21 25 25 C 1.37973 * 120.14014 * 0.02562 * 24 23 22 26 26 C 1.47388 * 110.99995 * 66.05000 * 12 11 10 27 27 H 0.96996 * 119.99815 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47144 * 60.00280 * 9 7 2 29 29 H 1.08993 * 109.47291 * 299.99651 * 9 7 2 30 30 H 1.09001 * 109.46865 * 60.00463 * 10 9 7 31 31 H 1.08993 * 109.47313 * 299.99991 * 10 9 7 32 32 H 1.08996 * 109.47862 * 300.00088 * 11 10 9 33 33 H 1.09005 * 109.47549 * 60.00676 * 11 10 9 34 34 H 1.08993 * 109.42240 * 285.00396 * 13 12 11 35 35 H 1.08998 * 109.42438 * 44.83287 * 13 12 11 36 36 H 1.09008 * 109.74409 * 289.95004 * 14 13 12 37 37 H 1.08999 * 109.75791 * 169.29571 * 14 13 12 38 38 H 1.08000 * 120.06725 * 359.97438 * 21 20 19 39 39 H 1.08000 * 119.92767 * 180.29254 * 22 21 20 40 40 H 1.08000 * 119.85672 * 179.72981 * 23 22 21 41 41 H 1.08006 * 119.93361 * 180.02562 * 24 23 22 42 42 H 1.08006 * 120.06985 * 180.02562 * 25 24 23 43 43 H 1.08999 * 109.75849 * 293.99442 * 26 12 11 44 44 H 1.08999 * 109.75811 * 54.69360 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5516 -2.6363 -0.0001 12 7 6.0414 -4.0214 -0.0009 13 6 7.4892 -4.0681 0.2466 14 6 7.9071 -5.4988 0.6128 15 7 7.3445 -6.4072 -0.3859 16 6 6.3412 -6.0652 -1.2465 17 7 6.0974 -7.0997 -1.9906 18 7 6.8753 -8.0724 -1.6571 19 6 7.6640 -7.6955 -0.6699 20 6 8.6973 -8.5170 -0.0021 21 6 9.1605 -9.6865 -0.6057 22 6 10.1285 -10.4453 0.0197 23 6 10.6311 -10.0548 1.2480 24 6 10.1720 -8.8992 1.8543 25 6 9.2084 -8.1287 1.2367 26 6 5.6908 -4.7049 -1.2587 27 1 -0.4850 0.8400 -0.0004 28 1 3.8746 -0.6807 0.8905 29 1 3.8753 -0.6795 -0.8894 30 1 3.6587 -3.1500 -0.8904 31 1 3.6580 -3.1505 0.8896 32 1 5.9150 -2.1224 -0.8900 33 1 5.9150 -2.1226 0.8900 34 1 8.0208 -3.7539 -0.6515 35 1 7.7384 -3.3963 1.0680 36 1 7.5220 -5.7536 1.6003 37 1 8.9943 -5.5771 0.6105 38 1 8.7651 -9.9950 -1.5622 39 1 10.4913 -11.3483 -0.4487 40 1 11.3856 -10.6545 1.7355 41 1 10.5686 -8.5994 2.8131 42 1 8.8510 -7.2265 1.7108 43 1 4.6086 -4.8145 -1.3293 44 1 6.0586 -4.1274 -2.1068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076089652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:22 Heat of formation + Delta-G solvation = 88.456256 kcal Electronic energy + Delta-G solvation = -24731.477120 eV Core-core repulsion = 21263.027522 eV Total energy + Delta-G solvation = -3468.449599 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.28691 -39.97860 -39.51610 -36.54211 -35.37665 -33.97502 -33.02826 -31.92334 -31.69138 -30.42704 -28.78497 -26.82214 -25.11047 -24.65228 -23.63769 -22.97803 -21.91785 -21.68596 -20.81292 -18.87586 -18.58103 -17.79064 -17.61671 -16.82235 -16.61162 -16.51262 -15.98126 -15.76327 -15.62273 -15.26398 -14.96506 -14.76384 -14.65852 -14.30236 -13.93471 -13.88818 -13.68320 -13.31347 -13.21454 -12.94935 -12.74136 -12.47569 -12.41290 -12.28747 -12.06872 -11.78441 -11.56373 -11.47822 -11.43369 -11.28089 -11.20263 -10.84897 -10.73778 -9.95238 -9.61354 -9.35989 -8.26634 -6.31358 -0.23024 0.40927 0.95295 1.29813 1.38467 1.40882 1.52678 1.70428 2.38858 2.45912 2.83459 2.99171 3.08866 3.22327 3.35469 3.68927 3.88830 3.94991 4.00911 4.11328 4.17336 4.23665 4.26234 4.30025 4.43551 4.47751 4.49788 4.59264 4.68670 4.69381 4.73009 4.84834 4.90414 4.93693 4.97458 5.07779 5.11088 5.42525 5.45956 5.53008 5.54074 5.59719 5.68877 5.72934 5.78804 5.92673 5.96350 6.32432 6.78125 7.33110 7.51025 8.90594 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.032511 B = 0.002357 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.041090 B =11876.034431 C =12341.654838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.004 4.004 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.237 1.237 7 C -0.533 4.533 8 H 0.024 0.976 9 C -0.009 4.009 10 C -0.094 4.094 11 C 0.071 3.929 12 N -0.550 5.550 13 C 0.036 3.964 14 C 0.101 3.899 15 N -0.464 5.464 16 C 0.188 3.812 17 N -0.327 5.327 18 N -0.329 5.329 19 C 0.225 3.775 20 C -0.042 4.042 21 C -0.093 4.093 22 C -0.120 4.120 23 C -0.101 4.101 24 C -0.115 4.115 25 C -0.112 4.112 26 C 0.142 3.858 27 H 0.265 0.735 28 H 0.027 0.973 29 H 0.022 0.978 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.136 0.864 36 H 0.112 0.888 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.140 0.860 43 H 0.102 0.898 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.622 -14.895 5.639 34.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.200 4.200 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.160 1.160 7 C -0.571 4.571 8 H 0.043 0.957 9 C -0.047 4.047 10 C -0.132 4.132 11 C -0.056 4.056 12 N -0.275 5.275 13 C -0.092 4.092 14 C -0.020 4.020 15 N -0.154 5.154 16 C -0.081 4.081 17 N -0.167 5.167 18 N -0.169 5.169 19 C -0.040 4.040 20 C -0.045 4.045 21 C -0.113 4.113 22 C -0.138 4.138 23 C -0.120 4.120 24 C -0.133 4.133 25 C -0.132 4.132 26 C 0.012 3.988 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.154 0.846 36 H 0.130 0.870 37 H 0.148 0.852 38 H 0.139 0.861 39 H 0.169 0.831 40 H 0.175 0.825 41 H 0.177 0.823 42 H 0.158 0.842 43 H 0.120 0.880 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 29.613 -15.867 4.966 33.961 hybrid contribution -0.172 1.672 -0.198 1.693 sum 29.441 -14.195 4.769 33.030 Atomic orbital electron populations 1.70103 1.08582 1.28131 1.52896 1.26159 0.95688 1.03982 0.94181 0.85555 0.79695 0.77579 0.79145 1.19320 1.21395 1.15981 1.21549 0.92633 0.92810 1.50150 0.95723 1.19487 0.93405 0.94906 0.96896 1.21334 0.94178 0.96977 1.00739 1.22159 0.94777 0.86015 1.02603 1.62033 1.14745 1.17957 1.32794 1.22658 0.87011 0.95558 1.03954 1.22743 1.00958 0.87382 0.90917 1.46459 1.28466 1.11146 1.29355 1.25028 0.92251 0.99172 0.91666 1.73835 1.21016 0.97690 1.24145 1.74708 1.06800 1.21893 1.13534 1.23109 0.99788 0.83896 0.97231 1.17652 0.95446 0.95489 0.95923 1.21293 0.96635 0.93191 1.00221 1.21430 0.96012 1.00287 0.96024 1.21767 0.99189 0.96414 0.94591 1.21456 0.96106 0.94667 1.01028 1.21578 0.97355 1.01229 0.93002 1.20688 1.00716 0.84686 0.92676 0.92635 0.95445 0.96016 0.93838 0.93349 0.93243 0.88208 0.92706 0.84581 0.87024 0.85191 0.86113 0.83149 0.82506 0.82298 0.84194 0.88002 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.78 13.96 21.45 0.30 -60.48 16 2 C 0.00 -0.24 5.47 84.65 0.46 0.22 16 3 Si 0.96 43.33 27.47 68.60 1.88 45.21 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 7 C -0.53 -30.75 9.66 25.60 0.25 -30.50 16 8 H 0.02 1.59 7.99 -2.91 -0.02 1.57 16 9 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 10 C -0.09 -3.42 5.08 30.60 0.16 -3.26 16 11 C 0.07 1.77 4.96 86.30 0.43 2.20 16 12 N -0.55 -12.52 4.65 -898.13 -4.18 -16.69 16 13 C 0.04 0.51 5.55 86.45 0.48 0.99 16 14 C 0.10 1.38 5.36 86.59 0.46 1.85 16 15 N -0.46 -11.13 3.17 -505.32 -1.60 -12.73 16 16 C 0.19 5.60 7.89 137.89 1.09 6.69 16 17 N -0.33 -11.84 12.18 -49.85 -0.61 -12.44 16 18 N -0.33 -11.34 12.05 -51.52 -0.62 -11.96 16 19 C 0.22 6.09 7.74 136.67 1.06 7.15 16 20 C -0.04 -0.86 5.87 -20.09 -0.12 -0.98 16 21 C -0.09 -1.73 9.71 22.52 0.22 -1.51 16 22 C -0.12 -1.42 10.03 22.23 0.22 -1.20 16 23 C -0.10 -0.85 10.04 22.32 0.22 -0.63 16 24 C -0.11 -1.01 10.03 22.23 0.22 -0.79 16 25 C -0.11 -1.50 9.07 22.52 0.20 -1.29 16 26 C 0.14 3.78 5.47 85.49 0.47 4.25 16 27 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 28 H 0.03 1.15 7.20 -2.39 -0.02 1.13 16 29 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 30 H 0.04 1.66 6.69 -2.39 -0.02 1.64 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.14 8.08 -2.39 -0.02 1.12 16 33 H 0.10 2.12 7.86 -2.38 -0.02 2.10 16 34 H 0.05 0.76 8.07 -2.39 -0.02 0.74 16 35 H 0.14 1.16 7.82 -2.39 -0.02 1.15 16 36 H 0.11 1.30 7.55 -2.38 -0.02 1.28 16 37 H 0.13 0.99 7.28 -2.39 -0.02 0.98 16 38 H 0.12 2.50 7.96 -2.91 -0.02 2.47 16 39 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 41 H 0.16 0.45 8.06 -2.91 -0.02 0.42 16 42 H 0.14 1.35 5.02 -2.91 -0.01 1.34 16 43 H 0.10 3.09 6.79 -2.39 -0.02 3.07 16 44 H 0.08 1.95 8.09 -2.39 -0.02 1.93 16 Total: -1.00 -80.33 354.80 2.07 -78.26 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 0.95 Total: 7.93 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 5.95 Total: -17.09 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -6.71 Total: -114.32 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.88 Total: 45.21 kcal Total: -80.33 2.07 -78.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076089652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.720 kcal (2) G-P(sol) polarization free energy of solvation -80.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds