Wall clock time and date at job start Fri Apr 10 2020 18:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34224 * 116.99961 * 2 1 4 4 O 1.20829 * 120.00496 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00178 * 179.97438 * 3 2 1 6 6 N 1.46494 * 109.47502 * 175.12233 * 5 3 2 7 7 C 1.36939 * 120.00115 * 88.91998 * 6 5 3 8 8 H 1.07994 * 120.00012 * 175.31030 * 7 6 5 9 9 C 1.38811 * 119.99657 * 355.31690 * 7 6 5 10 10 N 1.31624 * 120.00025 * 328.68378 * 9 7 6 11 11 Si 1.86802 * 119.99912 * 148.68596 * 9 7 6 12 12 H 1.48500 * 109.46825 * 94.99473 * 11 9 7 13 13 H 1.48499 * 109.47218 * 214.99483 * 11 9 7 14 14 H 1.48494 * 109.47140 * 334.99909 * 11 9 7 15 15 C 1.46501 * 119.99804 * 268.92179 * 6 5 3 16 16 C 1.50698 * 109.47380 * 274.65088 * 15 6 5 17 17 O 1.21282 * 119.99616 * 5.83360 * 16 15 6 18 18 N 1.34777 * 120.00182 * 185.82507 * 16 15 6 19 19 C 1.46496 * 119.99859 * 5.89817 * 18 16 15 20 20 C 1.53002 * 109.47110 * 260.79549 * 19 18 16 21 21 C 1.53002 * 109.47293 * 63.46824 * 20 19 18 22 22 C 1.53001 * 109.47400 * 183.46904 * 20 19 18 23 23 C 1.46497 * 119.99808 * 185.89167 * 18 16 15 24 24 C 1.53004 * 117.50216 * 15.73520 * 23 18 16 25 25 C 1.52997 * 59.99905 * 252.50926 * 24 23 18 26 26 H 1.09005 * 109.46952 * 59.99720 * 1 2 3 27 27 H 1.08993 * 109.47298 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46737 * 300.00234 * 1 2 3 29 29 H 1.09007 * 109.46805 * 55.12435 * 5 3 2 30 30 H 1.08993 * 109.46794 * 295.12900 * 5 3 2 31 31 H 0.96997 * 119.99763 * 180.02562 * 10 9 7 32 32 H 1.09005 * 109.46724 * 154.65418 * 15 6 5 33 33 H 1.08998 * 109.47651 * 34.65744 * 15 6 5 34 34 H 1.08997 * 109.47367 * 20.79650 * 19 18 16 35 35 H 1.09002 * 109.47093 * 140.79961 * 19 18 16 36 36 H 1.08998 * 109.47050 * 303.47264 * 20 19 18 37 37 H 1.08995 * 109.47647 * 184.72999 * 21 20 19 38 38 H 1.09004 * 109.46813 * 304.73157 * 21 20 19 39 39 H 1.09006 * 109.46796 * 64.72419 * 21 20 19 40 40 H 1.08999 * 109.47092 * 59.99773 * 22 20 19 41 41 H 1.09005 * 109.47155 * 180.02562 * 22 20 19 42 42 H 1.08995 * 109.46810 * 300.00181 * 22 20 19 43 43 H 1.09003 * 115.54819 * 161.43888 * 23 18 16 44 44 H 1.09002 * 117.49500 * 359.97438 * 24 23 18 45 45 H 1.08992 * 117.50105 * 145.01692 * 24 23 18 46 46 H 1.09010 * 117.49785 * 252.50940 * 25 24 23 47 47 H 1.08998 * 117.52144 * 107.48070 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9821 2.6747 -0.1170 7 6 4.1492 3.4362 1.0088 8 1 4.5282 4.4442 0.9276 9 6 3.8316 2.9123 2.2545 10 7 2.8616 2.0301 2.3695 11 14 4.7809 3.4595 3.7674 12 1 4.0489 4.5636 4.4385 13 1 4.9200 2.3162 4.7048 14 1 6.1283 3.9338 3.3616 15 6 4.2190 3.2599 -1.4390 16 6 5.6307 2.9625 -1.8744 17 8 6.3324 2.2368 -1.2021 18 7 6.1135 3.5028 -3.0108 19 6 5.3141 4.4795 -3.7546 20 6 4.6143 3.7820 -4.9229 21 6 3.6361 2.7376 -4.3814 22 6 3.8491 4.8168 -5.7503 23 6 7.4376 3.1135 -3.5021 24 6 8.0652 1.8479 -2.9146 25 6 8.6127 3.2234 -2.5286 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.9603 0.7069 -0.8423 30 1 3.9516 0.8583 0.9312 31 1 2.6395 1.6644 3.2400 32 1 4.0736 4.3390 -1.3899 33 1 3.5195 2.8313 -2.1567 34 1 4.5670 4.9172 -3.0926 35 1 5.9650 5.2653 -4.1379 36 1 5.3578 3.2919 -5.5515 37 1 3.1999 2.1831 -5.2122 38 1 4.1670 2.0490 -3.7239 39 1 2.8447 3.2366 -3.8221 40 1 4.5460 5.5608 -6.1361 41 1 3.3502 4.3197 -6.5824 42 1 3.1057 5.3068 -5.1217 43 1 7.6320 3.3312 -4.5524 44 1 7.4930 1.3051 -2.1621 45 1 8.6725 1.2325 -3.5782 46 1 9.5805 3.5130 -2.9384 47 1 8.4008 3.5857 -1.5227 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076093193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:25 Heat of formation + Delta-G solvation = -45.663266 kcal Electronic energy + Delta-G solvation = -28322.367549 eV Core-core repulsion = 24508.500421 eV Total energy + Delta-G solvation = -3813.867128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.07139 -38.90915 -36.62751 -36.32091 -35.33926 -34.34368 -32.59054 -31.36003 -28.59740 -27.51725 -26.66447 -25.97404 -25.78977 -23.15942 -22.07744 -21.51038 -20.44600 -19.82062 -18.35007 -16.99280 -16.93379 -16.24845 -15.85548 -15.36610 -15.27051 -15.04510 -14.73474 -14.54346 -14.22178 -13.69564 -13.55917 -13.31191 -13.13918 -12.91546 -12.43016 -12.31035 -12.22898 -12.10308 -11.98305 -11.70471 -11.42408 -11.19761 -11.09249 -10.91610 -10.89338 -10.68858 -10.60578 -10.52535 -10.45168 -10.15140 -10.10540 -9.88108 -9.60936 -9.26477 -8.82773 -8.37318 -8.01772 -7.14187 -5.95209 -3.13013 3.20268 3.22806 3.40811 3.48976 3.55088 3.87306 4.02513 4.19030 4.50759 4.74930 4.84347 4.93870 5.07299 5.12423 5.25456 5.31621 5.33872 5.42138 5.50077 5.58922 5.67160 5.71914 5.79745 5.82197 5.85825 5.88372 5.89278 5.95701 6.01932 6.08912 6.10020 6.15321 6.26658 6.31663 6.34875 6.39136 6.66761 6.67950 7.07817 7.11520 7.64567 7.77917 7.82898 8.10057 8.86923 8.99738 9.38365 9.70837 10.08959 11.16751 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.005663 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.133679 B = 4943.598029 C = 6364.647144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.384 6.384 3 C 0.461 3.539 4 O -0.499 6.499 5 C 0.193 3.807 6 N -0.544 5.544 7 C -0.256 4.256 8 H 0.080 0.920 9 C 0.010 3.990 10 N -0.890 5.890 11 Si 0.896 3.104 12 H -0.290 1.290 13 H -0.288 1.288 14 H -0.278 1.278 15 C 0.124 3.876 16 C 0.485 3.515 17 O -0.511 6.511 18 N -0.596 5.596 19 C 0.116 3.884 20 C -0.112 4.112 21 C -0.154 4.154 22 C -0.146 4.146 23 C 0.072 3.928 24 C -0.194 4.194 25 C -0.190 4.190 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.113 0.887 31 H 0.257 0.743 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.117 0.883 44 H 0.140 0.860 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.914 0.885 -15.499 15.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.302 6.302 3 C 0.300 3.700 4 O -0.383 6.383 5 C 0.064 3.936 6 N -0.261 5.261 7 C -0.384 4.384 8 H 0.098 0.902 9 C -0.188 4.188 10 N -0.533 5.533 11 Si 0.725 3.275 12 H -0.218 1.218 13 H -0.214 1.214 14 H -0.204 1.204 15 C -0.007 4.007 16 C 0.273 3.727 17 O -0.385 6.385 18 N -0.330 5.330 19 C -0.007 4.007 20 C -0.132 4.132 21 C -0.211 4.211 22 C -0.203 4.203 23 C -0.033 4.033 24 C -0.231 4.231 25 C -0.229 4.229 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.131 0.869 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.135 0.865 44 H 0.157 0.843 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.955 0.747 -14.913 15.222 hybrid contribution 0.161 0.470 0.847 0.982 sum 3.116 1.217 -14.066 14.458 Atomic orbital electron populations 1.22856 0.79860 1.01296 1.01265 1.86560 1.20971 1.36846 1.85829 1.25621 0.93502 0.80246 0.70613 1.90462 1.66552 1.36326 1.44942 1.20353 0.85070 0.85852 1.02345 1.43539 1.73927 1.07902 1.00737 1.19100 1.37884 0.97808 0.83567 0.90227 1.24625 0.97250 0.99304 0.97640 1.70050 1.25362 1.34042 1.23871 0.86380 0.80839 0.77561 0.82764 1.21755 1.21389 1.20385 1.21101 0.90855 0.99499 0.89289 1.23043 0.91728 0.79300 0.78665 1.90464 1.59180 1.36686 1.52207 1.47670 1.16096 1.44053 1.25161 1.21665 0.94792 0.90517 0.93749 1.21533 0.97914 0.96875 0.96845 1.22051 0.99074 0.98887 1.01066 1.21789 1.00200 0.98582 0.99777 1.21524 0.82839 1.03061 0.95828 1.23823 1.03080 0.91612 1.04591 1.23203 0.96935 1.01551 1.01215 0.93647 0.90166 0.92813 0.92884 0.86898 0.93287 0.90214 0.90218 0.89540 0.91012 0.91149 0.92874 0.92124 0.91953 0.92749 0.92575 0.92256 0.86496 0.84269 0.90096 0.89476 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.56 101.05 1.07 1.82 16 2 O -0.38 -8.41 10.57 -39.24 -0.41 -8.83 16 3 C 0.46 11.32 6.22 36.01 0.22 11.54 16 4 O -0.50 -13.57 15.66 -18.75 -0.29 -13.86 16 5 C 0.19 4.68 5.48 -5.19 -0.03 4.65 16 6 N -0.54 -13.37 1.56 -175.99 -0.27 -13.64 16 7 C -0.26 -6.98 9.59 -15.06 -0.14 -7.12 16 8 H 0.08 2.14 7.99 -52.49 -0.42 1.72 16 9 C 0.01 0.28 4.77 -17.43 -0.08 0.20 16 10 N -0.89 -25.47 9.12 55.49 0.51 -24.97 16 11 Si 0.90 22.09 29.65 -169.99 -5.04 17.05 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 C 0.12 2.44 4.63 -5.19 -0.02 2.42 16 16 C 0.49 9.05 6.46 -10.99 -0.07 8.98 16 17 O -0.51 -11.22 12.13 5.56 0.07 -11.15 16 18 N -0.60 -8.63 2.53 -166.11 -0.42 -9.05 16 19 C 0.12 1.31 4.94 -4.04 -0.02 1.29 16 20 C -0.11 -1.11 3.10 -90.62 -0.28 -1.39 16 21 C -0.15 -1.80 7.54 37.16 0.28 -1.52 16 22 C -0.15 -1.19 9.19 37.16 0.34 -0.85 16 23 C 0.07 0.96 6.61 -67.93 -0.45 0.52 16 24 C -0.19 -2.84 9.63 -26.73 -0.26 -3.09 16 25 C -0.19 -2.71 9.88 -26.73 -0.26 -2.97 16 26 H 0.04 0.76 8.13 -51.93 -0.42 0.33 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.05 1.02 8.13 -51.93 -0.42 0.59 16 29 H 0.05 1.15 8.06 -51.93 -0.42 0.73 16 30 H 0.11 3.00 6.31 -51.93 -0.33 2.68 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.08 1.52 6.76 -51.93 -0.35 1.17 16 33 H 0.08 1.45 4.45 -51.93 -0.23 1.22 16 34 H 0.09 1.02 5.99 -51.93 -0.31 0.71 16 35 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.84 5.81 -51.93 -0.30 0.54 16 39 H 0.06 0.77 7.11 -51.93 -0.37 0.40 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.14 2.54 5.17 -52.27 -0.27 2.27 16 45 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 47 H 0.10 1.69 7.65 -51.93 -0.40 1.29 16 LS Contribution 372.43 15.07 5.61 5.61 Total: -1.00 -32.88 372.43 -7.57 -40.45 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.60 Total: 3.93 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 0.29 Total: 14.46 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: -0.19 Total: -47.66 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.64 Total: -33.84 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.04 Total: 17.05 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.88 -7.57 -40.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076093193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.211 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds