Wall clock time and date at job start Fri Apr 10 2020 18:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34237 * 117.00141 * 2 1 4 4 O 1.20819 * 119.99782 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99735 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47459 * 59.99695 * 5 3 2 7 7 C 1.53006 * 109.47219 * 299.99304 * 5 3 2 8 8 C 1.53004 * 109.46804 * 179.97438 * 5 3 2 9 9 H 1.09002 * 109.50244 * 299.99795 * 8 5 3 10 10 C 1.53121 * 109.53664 * 179.89676 * 8 5 3 11 11 C 1.53114 * 109.15992 * 182.38283 * 10 8 5 12 12 C 1.53036 * 109.28047 * 57.65972 * 11 10 8 13 13 N 1.46844 * 109.52085 * 300.81827 * 12 11 10 14 14 C 1.46899 * 111.00001 * 185.83807 * 13 12 11 15 15 C 1.50703 * 109.47016 * 65.79125 * 14 13 12 16 16 O 1.21293 * 120.00066 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99732 * 180.02562 * 15 14 13 18 18 C 1.37103 * 119.99888 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99893 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99920 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00216 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99690 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47625 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47178 * 119.99865 * 22 20 18 25 25 H 1.48506 * 109.47023 * 239.99911 * 22 20 18 26 26 C 1.46847 * 111.19784 * 61.73796 * 13 12 11 27 27 H 1.09001 * 109.47308 * 60.00027 * 1 2 3 28 28 H 1.08999 * 109.47643 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47110 * 300.00582 * 1 2 3 30 30 H 1.09003 * 109.46671 * 179.97438 * 6 5 3 31 31 H 1.08997 * 109.47008 * 299.99316 * 6 5 3 32 32 H 1.08992 * 109.47019 * 59.99913 * 6 5 3 33 33 H 1.09001 * 109.47122 * 300.00664 * 7 5 3 34 34 H 1.09001 * 109.46721 * 60.00333 * 7 5 3 35 35 H 1.08999 * 109.47011 * 180.02562 * 7 5 3 36 36 H 1.08999 * 109.52397 * 302.29366 * 10 8 5 37 37 H 1.09007 * 109.51903 * 62.47515 * 10 8 5 38 38 H 1.09002 * 109.50460 * 297.71044 * 11 10 8 39 39 H 1.09006 * 109.53560 * 177.62018 * 11 10 8 40 40 H 1.08993 * 109.46063 * 180.80377 * 12 11 10 41 41 H 1.08999 * 109.46203 * 60.83239 * 12 11 10 42 42 H 1.09005 * 109.46645 * 185.78802 * 14 13 12 43 43 H 1.08997 * 109.47271 * 305.78863 * 14 13 12 44 44 H 0.97000 * 120.00550 * 359.97438 * 17 15 14 45 45 H 0.96997 * 120.00110 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.46500 * 178.23954 * 26 13 12 47 47 H 1.09004 * 109.46099 * 58.28030 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1129 0.5814 -1.2501 7 6 4.1138 0.5811 1.2484 8 6 4.0001 2.7420 -0.0011 9 1 3.6104 3.2365 -0.8909 10 6 5.5292 2.8239 0.0009 11 6 5.9536 4.2938 0.0605 12 6 5.3523 4.9432 1.3090 13 7 3.8884 4.8396 1.2593 14 6 3.2706 5.5731 2.3720 15 6 3.5367 7.0477 2.2108 16 8 4.1775 7.4481 1.2621 17 7 3.0627 7.9214 3.1210 18 6 3.3043 9.2629 2.9741 19 1 3.8749 9.6195 2.1292 20 6 2.8160 10.1636 3.9126 21 7 2.1222 9.7297 4.9408 22 14 3.1459 11.9914 3.7128 23 1 3.9447 12.2186 2.4818 24 1 1.8555 12.7187 3.6074 25 1 3.9003 12.4899 4.8908 26 6 3.4554 3.4364 1.2491 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8900 30 1 5.2014 0.6388 -1.2506 31 1 3.8039 -0.4638 -1.2501 32 1 3.7229 1.0756 -2.1398 33 1 3.7244 1.0751 2.1386 34 1 3.8047 -0.4642 1.2484 35 1 5.2023 0.6385 1.2482 36 1 5.9211 2.2960 0.8702 37 1 5.9195 2.3686 -0.9094 38 1 5.5947 4.8126 -0.8284 39 1 7.0409 4.3577 0.1049 40 1 5.6410 5.9935 1.3468 41 1 5.7226 4.4327 2.1980 42 1 2.1951 5.3958 2.3714 43 1 3.6952 5.2282 3.3148 44 1 2.5499 7.6012 3.8795 45 1 1.7810 10.3585 5.5958 46 1 2.3664 3.3923 1.2436 47 1 3.8345 2.9329 2.1385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093279735.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:47 Heat of formation + Delta-G solvation = -146.461812 kcal Electronic energy + Delta-G solvation = -27344.728272 eV Core-core repulsion = 23526.490191 eV Total energy + Delta-G solvation = -3818.238081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.10946 -40.62394 -39.53072 -37.54628 -36.82744 -35.85587 -33.75801 -33.19316 -30.86499 -29.09301 -28.51898 -28.29365 -26.52772 -25.34911 -23.94328 -23.51897 -21.40987 -20.90213 -19.95244 -19.73675 -18.27896 -17.84692 -17.54652 -17.32220 -16.75869 -16.55565 -16.34715 -15.76278 -15.61571 -15.31308 -15.04126 -14.94096 -14.61029 -14.39859 -14.21884 -13.90352 -13.68617 -13.50056 -13.30608 -13.19167 -12.97749 -12.88648 -12.77928 -12.57127 -12.55117 -12.41959 -12.14856 -12.06783 -11.81571 -11.75192 -11.61823 -11.53810 -11.38100 -11.24398 -10.83027 -10.23327 -10.00787 -9.13220 -8.47455 -5.96424 1.18143 1.35425 1.40063 1.54986 1.74451 2.03114 2.27401 2.73444 3.18705 3.36453 3.54148 3.68864 3.75495 4.02487 4.06105 4.13462 4.24966 4.28852 4.31565 4.32446 4.35907 4.40886 4.47839 4.53337 4.68454 4.70392 4.75215 4.78249 4.83207 4.90171 4.96480 5.03785 5.07281 5.09713 5.16087 5.24983 5.31845 5.38531 5.40560 5.51181 5.56198 5.91227 6.13255 6.31206 6.59571 6.75696 7.11685 7.54469 8.10479 8.70505 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.021276 B = 0.003021 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.695230 B = 9266.915069 C =10128.233771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.462 3.538 4 O -0.532 6.532 5 C -0.042 4.042 6 C -0.139 4.139 7 C -0.144 4.144 8 C -0.059 4.059 9 H 0.060 0.940 10 C -0.107 4.107 11 C -0.109 4.109 12 C 0.051 3.949 13 N -0.534 5.534 14 C 0.059 3.941 15 C 0.444 3.556 16 O -0.611 6.611 17 N -0.575 5.575 18 C -0.331 4.331 19 H 0.079 0.921 20 C -0.015 4.015 21 N -0.922 5.922 22 Si 0.995 3.005 23 H -0.273 1.273 24 H -0.271 1.271 25 H -0.269 1.269 26 C 0.053 3.947 27 H 0.057 0.943 28 H 0.134 0.866 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.049 0.951 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.033 0.967 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.395 0.605 45 H 0.278 0.722 46 H 0.074 0.926 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 -25.504 -7.133 26.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.307 3.693 4 O -0.421 6.421 5 C -0.043 4.043 6 C -0.196 4.196 7 C -0.201 4.201 8 C -0.078 4.078 9 H 0.079 0.921 10 C -0.144 4.144 11 C -0.146 4.146 12 C -0.077 4.077 13 N -0.258 5.258 14 C -0.072 4.072 15 C 0.231 3.769 16 O -0.497 6.497 17 N -0.213 5.213 18 C -0.461 4.461 19 H 0.097 0.903 20 C -0.214 4.214 21 N -0.563 5.563 22 Si 0.818 3.182 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.194 1.194 26 C -0.074 4.074 27 H 0.076 0.924 28 H 0.152 0.848 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.068 0.932 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.052 0.948 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.228 0.772 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.981 -24.643 -8.042 26.093 hybrid contribution -0.730 1.082 1.251 1.808 sum 2.251 -23.561 -6.791 24.623 Atomic orbital electron populations 1.23507 0.75408 1.05591 1.02128 1.86486 1.24359 1.32688 1.83658 1.24358 0.92838 0.81086 0.71058 1.90671 1.68018 1.37329 1.46115 1.20612 0.85303 0.97119 1.01315 1.21934 1.03334 1.00816 0.93474 1.22031 1.03278 1.00929 0.93882 1.20997 0.97054 0.91894 0.97889 0.92130 1.21760 0.92747 0.95708 1.04139 1.21511 1.00344 0.96125 0.96660 1.22208 0.86468 1.01048 0.97933 1.61396 1.08652 1.12360 1.43436 1.21663 1.01058 0.90704 0.93795 1.20675 0.83499 0.88892 0.83856 1.90450 1.44921 1.80490 1.33791 1.41945 1.48994 1.06373 1.23958 1.19706 1.33664 0.82886 1.09839 0.90311 1.26070 0.95921 1.04715 0.94691 1.69686 1.36349 1.37364 1.12938 0.84846 0.78298 0.76683 0.78336 1.19771 1.19620 1.19397 1.22481 1.00956 0.86472 0.97508 0.92447 0.84788 0.92573 0.88423 0.89954 0.92810 0.92922 0.89897 0.88573 0.89760 0.88742 0.93188 0.89669 0.92412 0.94850 0.88677 0.91749 0.77174 0.91304 0.90803 0.93930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.59 16 2 O -0.36 -6.67 10.37 -51.48 -0.53 -7.21 16 3 C 0.46 10.65 6.27 71.23 0.45 11.09 16 4 O -0.53 -16.56 13.42 21.98 0.29 -16.27 16 5 C -0.04 -0.74 0.52 -52.93 -0.03 -0.77 16 6 C -0.14 -1.70 8.06 71.98 0.58 -1.12 16 7 C -0.14 -1.91 7.70 71.98 0.55 -1.36 16 8 C -0.06 -1.40 1.35 -10.74 -0.01 -1.41 16 9 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 10 C -0.11 -2.00 4.57 30.67 0.14 -1.86 16 11 C -0.11 -2.86 6.09 30.64 0.19 -2.68 16 12 C 0.05 1.75 5.11 86.33 0.44 2.19 16 13 N -0.53 -19.79 4.40 -900.95 -3.96 -23.75 16 14 C 0.06 2.36 5.45 85.56 0.47 2.83 16 15 C 0.44 22.81 7.46 87.66 0.65 23.47 16 16 O -0.61 -35.62 13.90 -3.07 -0.04 -35.66 16 17 N -0.58 -31.35 5.29 -306.98 -1.62 -32.98 16 18 C -0.33 -19.61 9.68 84.04 0.81 -18.79 16 19 H 0.08 4.96 7.16 -2.91 -0.02 4.93 16 20 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 21 N -0.92 -51.46 13.05 21.66 0.28 -51.18 16 22 Si 0.99 44.29 29.55 68.60 2.03 46.32 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 C 0.05 1.56 4.08 86.32 0.35 1.91 16 27 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 28 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 0.91 8.13 -2.38 -0.02 0.89 16 30 H 0.10 0.80 6.49 -2.39 -0.02 0.79 16 31 H 0.08 0.81 8.11 -2.39 -0.02 0.79 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.83 6.41 -2.39 -0.02 0.82 16 34 H 0.08 0.88 8.11 -2.39 -0.02 0.86 16 35 H 0.10 0.92 6.38 -2.39 -0.02 0.90 16 36 H 0.08 1.28 6.32 -2.39 -0.02 1.26 16 37 H 0.09 1.29 6.58 -2.38 -0.02 1.27 16 38 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.06 2.50 5.78 -2.39 -0.01 2.49 16 41 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.10 3.62 7.99 -2.38 -0.02 3.60 16 43 H 0.06 2.30 8.12 -2.39 -0.02 2.28 16 44 H 0.39 20.55 7.90 -92.71 -0.73 19.82 16 45 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 46 H 0.07 2.49 5.42 -2.39 -0.01 2.47 16 47 H 0.04 1.11 6.39 -2.38 -0.02 1.09 16 Total: -1.00 -75.32 364.23 2.95 -72.37 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: 0.25 Total: 33.58 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 6.26 Total: 14.77 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -5.30 Total: -107.90 kcal Atomic # 8 Polarization: -58.85 SS G_CDS: -0.28 Total: -59.13 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -75.32 2.95 -72.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093279735.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.091 kcal (2) G-P(sol) polarization free energy of solvation -75.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds