Wall clock time and date at job start Fri Apr 10 2020 18:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00295 * 2 1 4 4 H 1.48494 * 109.47350 * 240.00121 * 3 2 1 5 5 H 1.48498 * 109.46960 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46948 * 119.99568 * 3 2 1 7 7 C 1.37875 * 119.99461 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00726 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47553 * 180.02562 * 9 7 2 11 11 C 1.46506 * 120.00064 * 270.00061 * 10 9 7 12 12 C 1.52999 * 109.47003 * 269.99860 * 11 10 9 13 13 N 1.46900 * 109.46601 * 179.97438 * 12 11 10 14 14 C 1.47015 * 111.00636 * 293.63693 * 13 12 11 15 15 C 1.53095 * 109.26095 * 177.61094 * 14 13 12 16 16 O 1.43017 * 109.26002 * 56.84500 * 15 14 13 17 17 C 1.43016 * 113.74011 * 301.33437 * 16 15 14 18 18 C 1.47016 * 110.99639 * 169.99909 * 13 12 11 19 19 C 1.34780 * 120.00020 * 90.00082 * 10 9 7 20 20 O 1.21276 * 119.99778 * 180.02562 * 19 10 9 21 21 C 1.50696 * 119.99879 * 0.02562 * 19 10 9 22 22 H 1.08998 * 110.35337 * 54.30722 * 21 19 10 23 23 C 1.54947 * 110.31038 * 292.16625 * 21 19 10 24 24 C 1.55305 * 100.94425 * 204.64180 * 23 21 19 25 25 C 1.54387 * 102.24962 * 34.12994 * 24 23 21 26 26 O 1.43236 * 107.59079 * 338.64624 * 25 24 23 27 27 H 0.97000 * 119.99839 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46761 * 59.99775 * 9 7 2 29 29 H 1.09003 * 109.47176 * 300.00803 * 9 7 2 30 30 H 1.08998 * 109.46743 * 29.99887 * 11 10 9 31 31 H 1.09003 * 109.46858 * 149.99892 * 11 10 9 32 32 H 1.08989 * 109.47298 * 299.99877 * 12 11 10 33 33 H 1.09003 * 109.47288 * 60.00295 * 12 11 10 34 34 H 1.09004 * 109.50507 * 297.54629 * 14 13 12 35 35 H 1.08998 * 109.50398 * 57.67455 * 14 13 12 36 36 H 1.09006 * 109.50431 * 296.91229 * 15 14 13 37 37 H 1.08993 * 109.54288 * 176.80360 * 15 14 13 38 38 H 1.09002 * 109.50426 * 298.73168 * 17 16 15 39 39 H 1.09005 * 109.54131 * 178.62595 * 17 16 15 40 40 H 1.09000 * 109.51254 * 302.32985 * 18 13 12 41 41 H 1.09006 * 109.50761 * 62.41958 * 18 13 12 42 42 H 1.09002 * 111.12827 * 86.71846 * 23 21 19 43 43 H 1.09008 * 111.12113 * 322.55814 * 23 21 19 44 44 H 1.08998 * 110.84418 * 275.94481 * 24 23 21 45 45 H 1.09003 * 110.84733 * 152.31891 * 24 23 21 46 46 H 1.09001 * 109.82619 * 98.16119 * 25 24 23 47 47 H 1.09004 * 109.82781 * 219.03947 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6789 -4.1695 -1.2693 12 6 1.7482 -5.3007 -1.7109 13 7 2.2252 -5.8585 -2.9834 14 6 2.1067 -4.8733 -4.0682 15 6 2.6685 -5.4738 -5.3595 16 8 1.9760 -6.6899 -5.6545 17 6 2.0711 -7.6723 -4.6195 18 6 1.5032 -7.0940 -3.3206 19 6 2.6408 -4.1250 1.1667 20 8 3.4292 -5.0465 1.1666 21 6 2.1507 -3.5526 2.4717 22 1 1.0612 -3.5558 2.5017 23 6 2.6898 -2.1127 2.6637 24 6 2.6470 -1.9856 4.2110 25 6 2.9783 -3.4229 4.6669 26 8 2.6821 -4.3023 3.5758 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 2.6867 -3.3878 -2.0289 31 1 3.6884 -4.5596 -1.1389 32 1 1.7404 -6.0823 -0.9514 33 1 0.7387 -4.9107 -1.8413 34 1 1.0574 -4.6158 -4.2129 35 1 2.6697 -3.9768 -3.8086 36 1 3.7309 -5.6817 -5.2320 37 1 2.5314 -4.7688 -6.1793 38 1 3.1161 -7.9441 -4.4706 39 1 1.5017 -8.5574 -4.9034 40 1 1.6257 -7.8185 -2.5155 41 1 0.4442 -6.8722 -3.4527 42 1 2.0340 -1.3814 2.1912 43 1 3.7098 -2.0221 2.2902 44 1 1.6534 -1.6909 4.5486 45 1 3.4021 -1.2830 4.5635 46 1 4.0352 -3.4950 4.9236 47 1 2.3691 -3.6862 5.5317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120846703.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:53 Heat of formation + Delta-G solvation = -134.614422 kcal Electronic energy + Delta-G solvation = -27553.914045 eV Core-core repulsion = 23736.189705 eV Total energy + Delta-G solvation = -3817.724340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.43948 -40.54069 -39.40264 -37.40896 -36.47837 -34.55706 -33.07011 -32.24413 -31.70978 -30.12001 -29.08844 -27.21321 -25.05317 -24.96313 -24.48067 -22.85545 -22.49649 -21.37741 -20.13030 -18.56278 -18.49541 -17.84571 -17.50029 -17.11659 -16.81089 -16.51693 -16.35923 -16.15617 -15.99406 -15.83991 -15.56684 -15.10817 -14.73500 -14.45658 -14.29888 -14.13629 -14.10113 -13.54574 -13.38746 -13.16094 -12.98390 -12.78180 -12.60966 -12.54531 -12.49366 -12.33530 -12.18865 -11.97955 -11.87698 -11.78310 -11.66216 -11.46063 -10.94539 -10.72633 -10.60390 -10.28545 -9.62791 -9.43586 -8.18606 -6.29215 1.44745 1.47486 1.52993 1.62075 1.92806 2.42672 2.71141 2.93769 3.09330 3.14079 3.51669 3.76406 3.81966 3.91120 3.97049 3.98711 4.07147 4.17785 4.17963 4.20797 4.30673 4.36514 4.41776 4.43835 4.56990 4.69893 4.75296 4.78683 4.80031 4.81905 4.85139 4.90049 4.94547 4.99439 5.00046 5.17277 5.25684 5.38345 5.61738 5.74818 5.84426 5.89868 6.00402 6.05222 6.15173 6.48713 6.79556 7.23698 7.39863 8.86909 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.011811 B = 0.004430 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.193750 B = 6318.579313 C = 8218.242337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.032 3.968 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.250 3.750 10 N -0.592 5.592 11 C 0.130 3.870 12 C 0.060 3.940 13 N -0.539 5.539 14 C 0.012 3.988 15 C 0.068 3.932 16 O -0.402 6.402 17 C 0.067 3.933 18 C 0.016 3.984 19 C 0.512 3.488 20 O -0.583 6.583 21 C 0.074 3.926 22 H 0.095 0.905 23 C -0.138 4.138 24 C -0.148 4.148 25 C 0.044 3.956 26 O -0.390 6.390 27 H 0.268 0.732 28 H 0.021 0.979 29 H 0.032 0.968 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.035 0.965 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.116 0.884 38 H 0.063 0.937 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.037 0.963 42 H 0.113 0.887 43 H 0.059 0.941 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.075 0.925 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.267 -6.613 -2.023 7.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.169 4.169 3 Si 0.771 3.229 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.074 0.926 9 C 0.130 3.870 10 N -0.323 5.323 11 C 0.007 3.993 12 C -0.069 4.069 13 N -0.265 5.265 14 C -0.116 4.116 15 C -0.009 4.009 16 O -0.321 6.321 17 C -0.010 4.010 18 C -0.112 4.112 19 C 0.301 3.699 20 O -0.464 6.464 21 C 0.013 3.987 22 H 0.112 0.888 23 C -0.176 4.176 24 C -0.185 4.185 25 C -0.032 4.032 26 O -0.309 6.309 27 H 0.077 0.923 28 H 0.039 0.961 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.134 0.866 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.110 0.890 41 H 0.055 0.945 42 H 0.131 0.869 43 H 0.078 0.922 44 H 0.108 0.892 45 H 0.119 0.881 46 H 0.093 0.907 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.930 -7.331 -2.140 8.180 hybrid contribution -0.615 1.476 0.167 1.608 sum 2.315 -5.855 -1.973 6.598 Atomic orbital electron populations 1.69993 1.07113 1.28210 1.50183 1.25470 0.95310 1.01625 0.94535 0.85800 0.78559 0.79496 0.79083 1.20221 1.21130 1.19043 1.21465 0.93255 0.90823 1.51416 0.92601 1.19227 0.87336 0.82876 0.97594 1.48109 1.45198 1.34387 1.04655 1.21200 0.97746 0.95347 0.85050 1.22223 0.96305 0.97046 0.91344 1.62148 1.56407 1.05782 1.02152 1.22926 1.00337 0.96098 0.92284 1.22748 0.96077 0.86169 0.95910 1.87942 1.75246 1.26011 1.42921 1.22776 1.01660 0.91282 0.85276 1.22870 0.96069 0.92443 0.99800 1.20744 0.80755 0.82163 0.86285 1.90587 1.36718 1.30998 1.88096 1.22707 0.98561 0.92309 0.85099 0.88761 1.23400 1.02316 0.94722 0.97139 1.23178 1.04168 0.97120 0.94030 1.23400 1.01462 0.89022 0.89319 1.88412 1.84610 1.33790 1.24126 0.92308 0.96083 0.95019 0.90138 0.91234 0.91718 0.95126 0.94672 0.89215 0.91711 0.86591 0.91836 0.86211 0.89007 0.94472 0.86895 0.92220 0.89236 0.88146 0.90713 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.87 13.29 21.45 0.28 -46.59 16 2 C 0.03 1.53 5.33 84.65 0.45 1.98 16 3 Si 0.94 38.77 29.54 68.60 2.03 40.80 16 4 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.29 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.53 -25.10 6.19 25.60 0.16 -24.94 16 8 H 0.06 2.71 7.81 -2.91 -0.02 2.68 16 9 C 0.25 11.23 4.70 85.63 0.40 11.63 16 10 N -0.59 -24.75 2.46 -826.15 -2.03 -26.78 16 11 C 0.13 4.87 5.34 86.38 0.46 5.33 16 12 C 0.06 2.00 5.28 86.30 0.46 2.46 16 13 N -0.54 -15.45 4.73 -895.21 -4.23 -19.68 16 14 C 0.01 0.30 5.44 86.31 0.47 0.77 16 15 C 0.07 1.49 7.01 72.01 0.50 1.99 16 16 O -0.40 -9.73 10.83 -148.98 -1.61 -11.34 16 17 C 0.07 1.37 7.01 72.02 0.50 1.87 16 18 C 0.02 0.39 5.64 86.31 0.49 0.88 16 19 C 0.51 22.47 7.08 87.66 0.62 23.09 16 20 O -0.58 -28.60 16.13 15.46 0.25 -28.35 16 21 C 0.07 2.88 2.94 30.51 0.09 2.97 16 22 H 0.09 3.59 7.13 -2.39 -0.02 3.57 16 23 C -0.14 -5.02 5.10 32.05 0.16 -4.86 16 24 C -0.15 -4.04 7.02 31.86 0.22 -3.82 16 25 C 0.04 1.24 7.79 72.45 0.56 1.80 16 26 O -0.39 -15.01 10.61 -130.50 -1.38 -16.40 16 27 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 28 H 0.02 1.01 8.07 -2.39 -0.02 0.99 16 29 H 0.03 1.47 6.05 -2.39 -0.01 1.46 16 30 H 0.08 2.95 6.44 -2.39 -0.02 2.93 16 31 H 0.07 2.77 7.42 -2.39 -0.02 2.75 16 32 H 0.06 2.31 8.04 -2.39 -0.02 2.29 16 33 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 34 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.09 2.38 6.38 -2.39 -0.02 2.36 16 36 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.09 2.07 8.09 -2.39 -0.02 2.05 16 41 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.11 4.60 5.23 -2.39 -0.01 4.59 16 43 H 0.06 2.30 8.05 -2.38 -0.02 2.28 16 44 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -60.25 367.33 -0.20 -60.45 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.94 Total: 26.75 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 5.56 Total: 21.14 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -5.98 Total: -93.05 kcal Atomic # 8 Polarization: -53.34 SS G_CDS: -2.75 Total: -56.09 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -60.25 -0.20 -60.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120846703.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.165 kcal (2) G-P(sol) polarization free energy of solvation -60.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds