Wall clock time and date at job start Fri Apr 10 2020 18:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46995 * 2 1 4 4 C 1.53002 * 109.47367 * 239.99805 * 2 1 3 5 5 O 1.45197 * 109.47550 * 119.99770 * 2 1 3 6 6 C 1.34235 * 116.99863 * 59.99625 * 5 2 1 7 7 O 1.20822 * 119.99998 * 0.02562 * 6 5 2 8 8 C 1.50698 * 119.99664 * 180.02562 * 6 5 2 9 9 H 1.08992 * 109.46678 * 31.28408 * 8 6 5 10 10 C 1.53172 * 109.43804 * 271.33338 * 8 6 5 11 11 C 1.53119 * 109.20917 * 180.84581 * 10 8 6 12 12 C 1.53128 * 109.21370 * 57.62253 * 11 10 8 13 13 C 1.53027 * 109.27849 * 302.31732 * 12 11 10 14 14 N 1.46849 * 109.45870 * 151.25911 * 8 6 5 15 15 C 1.46903 * 111.00252 * 305.84394 * 14 8 6 16 16 C 1.50696 * 109.47444 * 159.71199 * 15 14 8 17 17 O 1.21293 * 119.99984 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99778 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99948 * 179.97438 * 18 16 15 20 20 H 1.08006 * 119.99508 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00343 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00041 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00157 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47187 * 90.00173 * 23 21 19 25 25 H 1.48502 * 109.46947 * 209.99928 * 23 21 19 26 26 H 1.48498 * 109.47051 * 329.99547 * 23 21 19 27 27 H 1.08996 * 109.47131 * 299.99731 * 1 2 3 28 28 H 1.08994 * 109.47085 * 60.00467 * 1 2 3 29 29 H 1.09007 * 109.46716 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47171 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46475 * 299.99976 * 3 2 1 32 32 H 1.08995 * 109.46732 * 59.99666 * 3 2 1 33 33 H 1.08999 * 109.47244 * 299.99883 * 4 2 1 34 34 H 1.09002 * 109.47084 * 60.00133 * 4 2 1 35 35 H 1.09003 * 109.47263 * 179.97438 * 4 2 1 36 36 H 1.08997 * 109.59145 * 60.89461 * 10 8 6 37 37 H 1.09000 * 109.48830 * 300.73263 * 10 8 6 38 38 H 1.08999 * 109.51837 * 297.68967 * 11 10 8 39 39 H 1.09004 * 109.52578 * 177.56299 * 11 10 8 40 40 H 1.08997 * 109.49724 * 62.25674 * 12 11 10 41 41 H 1.09002 * 109.50012 * 182.33571 * 12 11 10 42 42 H 1.09000 * 109.46063 * 179.19178 * 13 12 11 43 43 H 1.08996 * 109.46563 * 299.16501 * 13 12 11 44 44 H 1.08996 * 109.46994 * 279.71540 * 15 14 8 45 45 H 1.09001 * 109.46539 * 39.71335 * 15 14 8 46 46 H 0.96998 * 120.00224 * 0.02562 * 18 16 15 47 47 H 0.97000 * 120.00215 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0141 -0.6844 1.1855 6 6 1.6534 -1.9684 1.3379 7 8 0.9566 -2.5027 0.5080 8 6 2.1175 -2.7432 2.5442 9 1 2.2222 -2.0667 3.3923 10 6 3.4702 -3.3951 2.2418 11 6 3.9267 -4.1981 3.4631 12 6 2.8604 -5.2418 3.8072 13 6 1.5269 -4.5362 4.0638 14 7 1.1319 -3.7830 2.8667 15 6 -0.2094 -3.2056 3.0268 16 6 -1.2453 -4.2871 2.8588 17 8 -0.9002 -5.4268 2.6280 18 7 -2.5551 -3.9878 2.9642 19 6 -3.4976 -4.9716 2.8109 20 1 -3.1903 -5.9865 2.6061 21 6 -4.8479 -4.6631 2.9199 22 7 -5.2218 -3.4283 3.1696 23 14 -6.1320 -6.0038 2.7118 24 1 -6.4212 -6.6214 4.0309 25 1 -7.3774 -5.4146 2.1574 26 1 -5.6184 -7.0410 1.7814 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6768 -1.7490 -1.2492 34 1 1.6768 -0.2075 -2.1392 35 1 3.1301 -0.7209 -1.2494 36 1 4.2062 -2.6229 2.0182 37 1 3.3693 -4.0615 1.3852 38 1 4.0651 -3.5260 4.3099 39 1 4.8681 -4.6995 3.2383 40 1 2.7500 -5.9372 2.9751 41 1 3.1614 -5.7885 4.7009 42 1 0.7623 -5.2778 4.2950 43 1 1.6344 -3.8512 4.9047 44 1 -0.2998 -2.7670 4.0205 45 1 -0.3648 -2.4335 2.2732 46 1 -2.8311 -3.0761 3.1477 47 1 -6.1646 -3.2129 3.2454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121503807.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:58 Heat of formation + Delta-G solvation = -121.537269 kcal Electronic energy + Delta-G solvation = -27861.963425 eV Core-core repulsion = 24044.806153 eV Total energy + Delta-G solvation = -3817.157272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.02337 -39.07839 -37.59667 -36.61995 -34.12535 -33.92532 -33.14072 -31.15122 -31.08964 -27.59764 -27.51602 -27.40641 -25.06977 -24.28384 -22.98695 -21.70111 -19.75696 -19.45057 -19.10600 -17.79588 -17.20919 -16.64318 -16.10321 -15.67797 -15.42961 -14.89846 -14.52137 -14.44711 -14.32929 -13.92094 -13.75827 -13.64485 -13.46795 -13.17058 -12.87053 -12.72496 -12.54899 -12.23661 -12.05041 -11.98486 -11.95055 -11.61027 -11.44883 -11.41184 -11.33754 -11.11730 -10.98774 -10.75668 -10.66002 -10.37185 -10.33862 -10.30481 -10.14120 -9.64870 -9.40536 -8.44742 -7.89706 -7.84441 -6.33893 -3.74138 2.33274 2.58855 3.22753 3.30590 3.37163 3.86951 4.01275 4.28116 4.56428 4.63457 4.65675 4.75559 4.82666 4.90747 5.02456 5.11820 5.19027 5.31270 5.32241 5.35797 5.45351 5.55222 5.58204 5.62396 5.64833 5.73892 5.75513 5.78436 5.79009 5.88490 5.90491 5.94035 5.98993 6.11214 6.19873 6.30628 6.31952 6.38202 6.47050 6.58220 7.16283 7.27310 7.62479 8.00702 8.14579 8.70971 9.26639 9.63514 10.16265 10.84307 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.012216 B = 0.004394 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.618537 B = 6370.982543 C = 8156.122471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.117 3.883 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.356 6.356 6 C 0.461 3.539 7 O -0.468 6.468 8 C 0.097 3.903 9 H 0.067 0.933 10 C -0.105 4.105 11 C -0.117 4.117 12 C -0.117 4.117 13 C 0.063 3.937 14 N -0.494 5.494 15 C 0.040 3.960 16 C 0.454 3.546 17 O -0.572 6.572 18 N -0.568 5.568 19 C -0.294 4.294 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.905 5.905 23 Si 0.929 3.071 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.270 1.270 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.028 0.972 44 H 0.049 0.951 45 H 0.086 0.914 46 H 0.390 0.610 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.694 9.413 -1.596 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.081 3.919 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.275 6.275 6 C 0.302 3.698 7 O -0.352 6.352 8 C -0.013 4.013 9 H 0.085 0.915 10 C -0.143 4.143 11 C -0.154 4.154 12 C -0.155 4.155 13 C -0.064 4.064 14 N -0.220 5.220 15 C -0.091 4.091 16 C 0.239 3.761 17 O -0.455 6.455 18 N -0.205 5.205 19 C -0.424 4.424 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.546 5.546 23 Si 0.756 3.244 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.194 1.194 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.046 0.954 44 H 0.067 0.933 45 H 0.104 0.896 46 H 0.223 0.777 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.491 8.250 -2.424 19.490 hybrid contribution -1.070 0.720 0.526 1.393 sum 16.420 8.970 -1.898 18.807 Atomic orbital electron populations 1.22513 0.93743 1.05274 1.02773 1.22162 0.94592 0.92057 0.83098 1.21838 1.01934 0.92818 1.03007 1.22488 1.01361 1.03496 0.96643 1.86534 1.70213 1.25515 1.45194 1.23443 0.77986 0.80376 0.88023 1.90660 1.33063 1.69383 1.42129 1.21291 0.94472 0.92277 0.93272 0.91538 1.21565 0.92781 0.99799 1.00105 1.21575 0.98739 0.97949 0.97168 1.21605 0.93645 0.98020 1.02247 1.22166 0.98269 0.97302 0.88644 1.61270 0.99611 1.22959 1.38149 1.21975 0.89134 0.97462 1.00504 1.19555 0.83030 0.89364 0.84177 1.90506 1.80467 1.21489 1.52988 1.41833 1.04078 1.11550 1.63085 1.19685 0.85597 0.91917 1.45202 0.87972 1.25227 0.98057 0.97189 0.97540 1.69615 1.17427 1.17953 1.49654 0.85877 0.79571 0.80402 0.78551 1.20500 1.21002 1.19435 0.91895 0.91061 0.89441 0.91658 0.90461 0.91505 0.89567 0.91173 0.92193 0.90871 0.90111 0.92048 0.91321 0.90477 0.91410 0.88520 0.95394 0.93255 0.89636 0.77680 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.40 8.37 37.16 0.31 -2.09 16 2 C 0.12 1.38 1.13 -90.62 -0.10 1.28 16 3 C -0.14 -1.21 8.85 37.16 0.33 -0.88 16 4 C -0.18 -2.09 8.37 37.16 0.31 -1.78 16 5 O -0.36 -4.81 9.89 -39.27 -0.39 -5.20 16 6 C 0.46 7.12 5.07 36.00 0.18 7.30 16 7 O -0.47 -8.71 10.94 -18.75 -0.21 -8.92 16 8 C 0.10 1.38 2.34 -68.80 -0.16 1.22 16 9 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 10 C -0.10 -1.23 5.37 -26.58 -0.14 -1.37 16 11 C -0.12 -1.20 6.00 -26.60 -0.16 -1.36 16 12 C -0.12 -1.48 6.09 -26.65 -0.16 -1.64 16 13 C 0.06 0.99 5.11 -3.84 -0.02 0.97 16 14 N -0.49 -8.67 3.81 -229.44 -0.87 -9.54 16 15 C 0.04 0.79 5.09 -4.98 -0.03 0.76 16 16 C 0.45 11.32 7.49 -10.99 -0.08 11.24 16 17 O -0.57 -16.05 14.78 5.55 0.08 -15.96 16 18 N -0.57 -15.07 5.29 -10.97 -0.06 -15.13 16 19 C -0.29 -8.47 9.68 -14.93 -0.14 -8.62 16 20 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -25.28 13.05 55.50 0.72 -24.55 16 23 Si 0.93 21.62 29.55 -169.99 -5.02 16.60 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.42 5.89 -51.92 -0.31 1.11 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 1.23 5.89 -51.93 -0.31 0.92 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 1.81 6.74 -51.93 -0.35 1.46 16 43 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.05 0.86 7.99 -51.93 -0.42 0.45 16 45 H 0.09 1.67 5.67 -51.93 -0.29 1.37 16 46 H 0.39 9.97 7.90 -40.82 -0.32 9.65 16 47 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 370.77 15.07 5.59 5.59 Total: -1.00 -33.01 370.77 -7.96 -40.98 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -7.85 Total: 10.63 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 0.04 Total: 5.52 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.21 Total: -49.23 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.51 Total: -30.08 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.01 -7.96 -40.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121503807.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.562 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds