Wall clock time and date at job start Fri Apr 10 2020 18:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 5 5 O 1.20833 * 119.99914 * 240.00003 * 4 2 1 6 6 O 1.34225 * 120.00258 * 59.99192 * 4 2 1 7 7 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 8 8 H 1.09000 * 109.50482 * 60.00071 * 7 2 1 9 9 C 1.53126 * 109.50160 * 299.92161 * 7 2 1 10 10 C 1.53122 * 109.15355 * 182.44720 * 9 7 2 11 11 C 1.53037 * 109.31387 * 57.59425 * 10 9 7 12 12 N 1.46842 * 109.52508 * 300.84155 * 11 10 9 13 13 C 1.46898 * 111.00075 * 185.84146 * 12 11 10 14 14 C 1.50695 * 109.47459 * 65.78756 * 13 12 11 15 15 O 1.21286 * 119.99851 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00118 * 180.02562 * 14 13 12 17 17 C 1.46501 * 119.99813 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46912 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99921 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00117 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99951 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00163 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47225 * 59.99646 * 22 20 18 24 24 H 1.48498 * 109.47082 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47019 * 299.99696 * 22 20 18 26 26 C 1.46851 * 111.19702 * 61.73793 * 12 11 10 27 27 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 30 30 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 31 31 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 32 32 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 33 33 H 0.96704 * 117.00320 * 179.97438 * 6 4 2 34 34 H 1.09004 * 109.52219 * 302.30699 * 9 7 2 35 35 H 1.08995 * 109.52153 * 62.50151 * 9 7 2 36 36 H 1.08999 * 109.47240 * 297.65109 * 10 9 7 37 37 H 1.08997 * 109.53435 * 177.57827 * 10 9 7 38 38 H 1.08997 * 109.46281 * 180.82143 * 11 10 9 39 39 H 1.09000 * 109.45618 * 60.86045 * 11 10 9 40 40 H 1.08996 * 109.46930 * 185.78849 * 13 12 11 41 41 H 1.09007 * 109.46879 * 305.78437 * 13 12 11 42 42 H 0.96996 * 119.99922 * 359.97438 * 16 14 13 43 43 H 1.08996 * 109.47375 * 299.99405 * 17 16 14 44 44 H 1.09004 * 109.47200 * 60.00319 * 17 16 14 45 45 H 0.97001 * 119.99870 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.45691 * 178.24357 * 26 12 11 47 47 H 1.08991 * 109.45928 * 58.27735 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7271 -1.6927 -1.1197 6 8 1.7080 -0.2517 -2.4496 7 6 2.0401 -0.7213 1.2492 8 1 1.6770 -1.7491 1.2497 9 6 1.5316 0.0011 2.4999 10 6 2.0963 -0.6905 3.7439 11 6 3.6250 -0.6901 3.6733 12 7 4.0605 -1.3936 2.4602 13 6 5.5224 -1.5339 2.4290 14 6 5.9645 -2.4366 3.5517 15 8 5.1427 -2.9156 4.3041 16 7 7.2733 -2.7108 3.7204 17 6 7.7031 -3.5880 4.8122 18 6 9.2029 -3.7319 4.7801 19 1 9.7783 -3.2208 4.0225 20 6 9.8404 -4.5162 5.7179 21 7 9.1397 -5.1382 6.6408 22 14 11.6995 -4.6940 5.6786 23 1 12.3281 -3.3585 5.8407 24 1 12.1352 -5.5833 6.7852 25 1 12.1132 -5.2814 4.3789 26 6 3.5704 -0.7199 1.2509 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 2.0541 -0.7404 -3.2089 34 1 1.8615 1.0398 2.4801 35 1 0.4426 -0.0359 2.5245 36 1 1.7341 -1.7178 3.7844 37 1 1.7731 -0.1554 4.6368 38 1 4.0292 -1.1949 4.5508 39 1 3.9870 0.3377 3.6469 40 1 5.8257 -1.9652 1.4751 41 1 5.9840 -0.5535 2.5477 42 1 7.9305 -2.3274 3.1188 43 1 7.3995 -3.1565 5.7659 44 1 7.2418 -4.5685 4.6936 45 1 9.5883 -5.6897 7.3008 46 1 3.9351 -1.2464 0.3689 47 1 3.9327 0.3079 1.2358 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135030973.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:22 Heat of formation + Delta-G solvation = -135.709190 kcal Electronic energy + Delta-G solvation = -26914.547558 eV Core-core repulsion = 23096.775745 eV Total energy + Delta-G solvation = -3817.771813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.23638 -39.43649 -38.28884 -36.37954 -35.88537 -34.06060 -32.77691 -32.23136 -29.92403 -28.29222 -27.81960 -26.35067 -25.06254 -23.31415 -23.11080 -22.11180 -20.44298 -19.55993 -18.99365 -18.13066 -17.06331 -16.61620 -16.20732 -15.84290 -15.57921 -15.24636 -14.98444 -14.81758 -14.36907 -14.17720 -14.00292 -13.96815 -13.47359 -13.23064 -13.17327 -12.65577 -12.53548 -12.31614 -12.20281 -12.07646 -11.89751 -11.87633 -11.75380 -11.32706 -11.24307 -10.97699 -10.93869 -10.87018 -10.83115 -10.59382 -10.37103 -10.25415 -10.03302 -9.37219 -8.88541 -8.68854 -8.06065 -7.78381 -6.13355 -4.20112 1.94405 2.70666 3.27182 3.31783 3.33359 3.47349 3.69418 4.22797 4.32177 4.41037 4.48826 4.52505 4.81926 4.89605 4.91699 5.10609 5.21296 5.22452 5.29115 5.31911 5.38682 5.40857 5.47257 5.50714 5.54046 5.60732 5.67297 5.72641 5.75641 5.77976 5.84843 5.93093 6.05368 6.13104 6.31902 6.34112 6.43611 7.13664 7.30089 7.38638 7.51890 7.57384 7.63897 7.72402 8.01379 8.70002 8.83740 9.20011 9.46720 10.96855 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.025969 B = 0.002571 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.968657 B =10888.458057 C =11528.065575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.046 4.046 3 C -0.147 4.147 4 C 0.482 3.518 5 O -0.500 6.500 6 O -0.517 6.517 7 C -0.064 4.064 8 H 0.089 0.911 9 C -0.117 4.117 10 C -0.113 4.113 11 C 0.048 3.952 12 N -0.515 5.515 13 C 0.037 3.963 14 C 0.499 3.501 15 O -0.538 6.538 16 N -0.716 5.716 17 C 0.252 3.748 18 C -0.543 4.543 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.049 3.951 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.408 0.592 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.022 0.978 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.389 0.611 43 H 0.025 0.975 44 H 0.026 0.974 45 H 0.266 0.734 46 H 0.095 0.905 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.338 15.626 -16.119 28.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.048 4.048 3 C -0.204 4.204 4 C 0.324 3.676 5 O -0.386 6.386 6 O -0.329 6.329 7 C -0.083 4.083 8 H 0.108 0.892 9 C -0.154 4.154 10 C -0.150 4.150 11 C -0.079 4.079 12 N -0.239 5.239 13 C -0.094 4.094 14 C 0.283 3.717 15 O -0.416 6.416 16 N -0.365 5.365 17 C 0.131 3.869 18 C -0.581 4.581 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.078 4.078 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.267 0.733 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.040 0.960 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.221 0.779 43 H 0.043 0.957 44 H 0.044 0.956 45 H 0.076 0.924 46 H 0.113 0.887 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -18.056 14.601 -14.993 27.640 hybrid contribution 2.048 0.436 -0.873 2.269 sum -16.008 15.037 -15.865 27.094 Atomic orbital electron populations 1.21914 0.91441 1.03092 1.03515 1.20549 0.97925 0.96649 0.89675 1.22004 1.01877 0.93030 1.03495 1.23541 0.77025 0.82448 0.84617 1.90729 1.35181 1.25867 1.86858 1.84523 1.72349 1.59132 1.16900 1.21075 0.95590 1.00241 0.91396 0.89231 1.21784 1.00313 0.99186 0.94150 1.21523 0.95126 1.01660 0.96736 1.22301 0.95679 0.95446 0.94501 1.61456 1.09177 1.51377 1.01867 1.21970 0.88950 0.98835 0.99635 1.20303 0.83230 0.82406 0.85730 1.90619 1.52152 1.52604 1.46215 1.46448 1.06121 1.50061 1.33895 1.19061 0.94403 0.89024 0.84383 1.21204 0.91350 1.30729 1.14863 0.92005 1.24952 0.98930 0.95126 0.95021 1.69968 1.35908 1.30329 1.16123 0.86479 0.84581 0.78113 0.77753 1.20111 1.21078 1.20069 1.22486 0.94453 0.96651 0.94240 0.91287 0.91898 0.90489 0.90501 0.91767 0.91322 0.73331 0.91835 0.91452 0.90761 0.91530 0.88276 0.95969 0.88450 0.92752 0.77891 0.95671 0.95571 0.92420 0.88741 0.95366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.06 37.16 0.30 -0.60 16 2 C -0.05 -0.38 0.52 -155.66 -0.08 -0.46 16 3 C -0.15 -0.98 7.70 37.16 0.29 -0.69 16 4 C 0.48 4.59 6.64 36.00 0.24 4.83 16 5 O -0.50 -6.51 14.43 -18.76 -0.27 -6.78 16 6 O -0.52 -3.53 13.23 -39.25 -0.52 -4.05 16 7 C -0.06 -0.67 1.35 -90.54 -0.12 -0.79 16 8 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 9 C -0.12 -1.07 4.57 -26.60 -0.12 -1.19 16 10 C -0.11 -1.33 6.09 -26.65 -0.16 -1.50 16 11 C 0.05 0.70 5.11 -3.84 -0.02 0.69 16 12 N -0.51 -7.92 4.40 -236.13 -1.04 -8.95 16 13 C 0.04 0.59 5.45 -4.98 -0.03 0.56 16 14 C 0.50 10.35 7.50 -10.99 -0.08 10.26 16 15 O -0.54 -13.19 14.32 5.55 0.08 -13.11 16 16 N -0.72 -15.51 5.55 -61.47 -0.34 -15.85 16 17 C 0.25 6.83 5.43 -5.19 -0.03 6.80 16 18 C -0.54 -14.99 9.28 -34.44 -0.32 -15.31 16 19 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 22 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 26 C 0.05 0.61 4.08 -3.83 -0.02 0.60 16 27 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.40 6.49 -51.93 -0.34 0.06 16 30 H 0.08 0.44 6.38 -51.93 -0.33 0.11 16 31 H 0.06 0.47 6.41 -51.93 -0.33 0.14 16 32 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 33 H 0.41 1.28 9.10 45.56 0.41 1.69 16 34 H 0.06 0.52 6.32 -51.93 -0.33 0.19 16 35 H 0.07 0.50 6.58 -51.93 -0.34 0.16 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 1.79 5.78 -51.93 -0.30 1.49 16 39 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.10 1.40 7.99 -51.93 -0.41 0.98 16 41 H 0.05 0.74 8.12 -51.92 -0.42 0.32 16 42 H 0.39 7.23 8.32 -40.82 -0.34 6.89 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.09 1.31 5.42 -51.93 -0.28 1.03 16 47 H 0.03 0.32 6.38 -51.93 -0.33 -0.01 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -34.81 365.68 -7.79 -42.60 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.68 Total: 5.40 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -0.25 Total: 4.88 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.64 Total: -50.56 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.71 Total: -23.94 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.81 -7.79 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135030973.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.109 kcal (2) G-P(sol) polarization free energy of solvation -34.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds