Wall clock time and date at job start Fri Apr 10 2020 18:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 5 5 O 1.20833 * 119.99914 * 240.00003 * 4 2 1 6 6 O 1.34225 * 120.00258 * 59.99192 * 4 2 1 7 7 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 8 8 H 1.09000 * 109.50482 * 60.00071 * 7 2 1 9 9 C 1.53126 * 109.50160 * 299.92161 * 7 2 1 10 10 C 1.53122 * 109.15355 * 182.44720 * 9 7 2 11 11 C 1.53037 * 109.31387 * 57.59425 * 10 9 7 12 12 N 1.46842 * 109.52508 * 300.84155 * 11 10 9 13 13 C 1.46898 * 111.00075 * 185.84146 * 12 11 10 14 14 C 1.50695 * 109.47459 * 65.78756 * 13 12 11 15 15 O 1.21286 * 119.99851 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00118 * 180.02562 * 14 13 12 17 17 C 1.46501 * 119.99813 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46912 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99921 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00117 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99951 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00163 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47225 * 59.99646 * 22 20 18 24 24 H 1.48498 * 109.47082 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47019 * 299.99696 * 22 20 18 26 26 C 1.46851 * 111.19702 * 61.73793 * 12 11 10 27 27 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 30 30 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 31 31 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 32 32 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 33 33 H 0.96704 * 117.00320 * 179.97438 * 6 4 2 34 34 H 1.09004 * 109.52219 * 302.30699 * 9 7 2 35 35 H 1.08995 * 109.52153 * 62.50151 * 9 7 2 36 36 H 1.08999 * 109.47240 * 297.65109 * 10 9 7 37 37 H 1.08997 * 109.53435 * 177.57827 * 10 9 7 38 38 H 1.08997 * 109.46281 * 180.82143 * 11 10 9 39 39 H 1.09000 * 109.45618 * 60.86045 * 11 10 9 40 40 H 1.08996 * 109.46930 * 185.78849 * 13 12 11 41 41 H 1.09007 * 109.46879 * 305.78437 * 13 12 11 42 42 H 0.96996 * 119.99922 * 359.97438 * 16 14 13 43 43 H 1.08996 * 109.47375 * 299.99405 * 17 16 14 44 44 H 1.09004 * 109.47200 * 60.00319 * 17 16 14 45 45 H 0.97001 * 119.99870 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.45691 * 178.24357 * 26 12 11 47 47 H 1.08991 * 109.45928 * 58.27735 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7271 -1.6927 -1.1197 6 8 1.7080 -0.2517 -2.4496 7 6 2.0401 -0.7213 1.2492 8 1 1.6770 -1.7491 1.2497 9 6 1.5316 0.0011 2.4999 10 6 2.0963 -0.6905 3.7439 11 6 3.6250 -0.6901 3.6733 12 7 4.0605 -1.3936 2.4602 13 6 5.5224 -1.5339 2.4290 14 6 5.9645 -2.4366 3.5517 15 8 5.1427 -2.9156 4.3041 16 7 7.2733 -2.7108 3.7204 17 6 7.7031 -3.5880 4.8122 18 6 9.2029 -3.7319 4.7801 19 1 9.7783 -3.2208 4.0225 20 6 9.8404 -4.5162 5.7179 21 7 9.1397 -5.1382 6.6408 22 14 11.6995 -4.6940 5.6786 23 1 12.3281 -3.3585 5.8407 24 1 12.1352 -5.5833 6.7852 25 1 12.1132 -5.2814 4.3789 26 6 3.5704 -0.7199 1.2509 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 2.0541 -0.7404 -3.2089 34 1 1.8615 1.0398 2.4801 35 1 0.4426 -0.0359 2.5245 36 1 1.7341 -1.7178 3.7844 37 1 1.7731 -0.1554 4.6368 38 1 4.0292 -1.1949 4.5508 39 1 3.9870 0.3377 3.6469 40 1 5.8257 -1.9652 1.4751 41 1 5.9840 -0.5535 2.5477 42 1 7.9305 -2.3274 3.1188 43 1 7.3995 -3.1565 5.7659 44 1 7.2418 -4.5685 4.6936 45 1 9.5883 -5.6897 7.3008 46 1 3.9351 -1.2464 0.3689 47 1 3.9327 0.3079 1.2358 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135030973.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:21 Heat of formation + Delta-G solvation = -162.868372 kcal Electronic energy + Delta-G solvation = -26915.725268 eV Core-core repulsion = 23096.775745 eV Total energy + Delta-G solvation = -3818.949523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.99593 -40.78189 -39.52464 -37.11227 -36.83482 -36.02860 -34.37260 -33.70122 -30.85174 -29.95480 -28.43837 -27.87180 -25.84348 -24.72418 -24.16226 -23.57129 -21.54947 -21.12643 -19.82262 -18.88263 -18.81697 -17.60542 -17.40174 -17.18438 -16.71393 -16.61823 -16.56769 -15.93992 -15.80476 -15.27430 -15.16765 -14.84458 -14.46772 -14.39175 -14.18243 -13.96402 -13.87231 -13.80293 -13.31793 -12.99312 -12.94879 -12.86062 -12.75548 -12.64228 -12.56034 -12.41089 -12.24625 -12.04128 -11.77305 -11.68190 -11.51865 -11.40969 -11.37701 -10.86139 -10.79638 -10.54748 -9.80770 -9.19152 -8.29755 -6.46779 1.23990 1.41758 1.46321 1.54496 1.78710 2.12481 2.26110 2.45274 3.03631 3.04712 3.56629 3.73023 3.83832 3.94971 4.06872 4.11736 4.17141 4.28518 4.33324 4.40396 4.40558 4.51506 4.66596 4.73547 4.77711 4.82965 4.90420 4.96596 5.01379 5.06200 5.08843 5.10339 5.16460 5.22768 5.23691 5.33017 5.44221 5.48654 5.54468 5.68258 5.70551 5.84223 6.03335 6.23182 6.64106 6.94461 7.03683 7.22739 7.52470 8.82380 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.025969 B = 0.002571 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.968657 B =10888.458057 C =11528.065575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 C -0.144 4.144 4 C 0.484 3.516 5 O -0.543 6.543 6 O -0.508 6.508 7 C -0.062 4.062 8 H 0.060 0.940 9 C -0.108 4.108 10 C -0.111 4.111 11 C 0.049 3.951 12 N -0.540 5.540 13 C 0.051 3.949 14 C 0.495 3.505 15 O -0.581 6.581 16 N -0.710 5.710 17 C 0.270 3.730 18 C -0.558 4.558 19 H 0.084 0.916 20 C 0.003 3.997 21 N -0.932 5.932 22 Si 0.986 3.014 23 H -0.261 1.261 24 H -0.285 1.285 25 H -0.263 1.263 26 C 0.053 3.947 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.424 0.576 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.041 0.959 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.407 0.593 43 H -0.013 1.013 44 H -0.017 1.017 45 H 0.269 0.731 46 H 0.080 0.920 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.145 18.460 -18.143 31.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.045 4.045 3 C -0.201 4.201 4 C 0.328 3.672 5 O -0.433 6.433 6 O -0.321 6.321 7 C -0.081 4.081 8 H 0.078 0.922 9 C -0.145 4.145 10 C -0.149 4.149 11 C -0.078 4.078 12 N -0.265 5.265 13 C -0.080 4.080 14 C 0.282 3.718 15 O -0.462 6.462 16 N -0.361 5.361 17 C 0.147 3.853 18 C -0.595 4.595 19 H 0.102 0.898 20 C -0.197 4.197 21 N -0.570 5.570 22 Si 0.809 3.191 23 H -0.185 1.185 24 H -0.210 1.210 25 H -0.187 1.187 26 C -0.073 4.073 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.285 0.715 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.133 0.867 41 H 0.102 0.898 42 H 0.242 0.758 43 H 0.005 0.995 44 H 0.001 0.999 45 H 0.078 0.922 46 H 0.098 0.902 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.880 17.484 -17.089 30.289 hybrid contribution 1.896 -0.466 -0.282 1.973 sum -15.983 17.018 -17.371 29.100 Atomic orbital electron populations 1.21936 0.89808 1.02978 1.04986 1.20549 0.99078 0.97074 0.87750 1.22024 1.01425 0.91732 1.04944 1.23873 0.76019 0.81710 0.85646 1.90724 1.37286 1.27831 1.87508 1.84481 1.71888 1.58958 1.16804 1.21005 0.94185 0.99350 0.93527 0.92181 1.21758 1.01554 0.99525 0.91627 1.21517 0.93258 1.00924 0.99211 1.22219 0.97453 0.95516 0.92622 1.61410 1.08822 1.53028 1.03290 1.21873 0.89858 0.98791 0.97511 1.21299 0.82185 0.82084 0.86269 1.90604 1.53201 1.54257 1.48116 1.46192 1.07316 1.49570 1.33060 1.18488 0.94663 0.87609 0.84536 1.21598 0.91383 1.31015 1.15529 0.89845 1.26094 1.04940 0.94373 0.94266 1.70139 1.38539 1.31206 1.17122 0.85191 0.77153 0.78656 0.78117 1.18526 1.21012 1.18712 1.22493 0.95829 0.97031 0.91995 0.90060 0.92848 0.88783 0.88912 0.92474 0.90075 0.71458 0.89668 0.89152 0.93315 0.89913 0.92602 0.94133 0.86739 0.89751 0.75751 0.99505 0.99857 0.92227 0.90176 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.06 71.98 0.58 -0.79 16 2 C -0.04 -0.59 0.52 -52.93 -0.03 -0.62 16 3 C -0.14 -1.39 7.70 71.98 0.55 -0.84 16 4 C 0.48 8.54 6.64 71.24 0.47 9.01 16 5 O -0.54 -14.12 14.43 21.94 0.32 -13.80 16 6 O -0.51 -5.82 13.23 -51.37 -0.68 -6.50 16 7 C -0.06 -1.21 1.35 -10.74 -0.01 -1.22 16 8 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 9 C -0.11 -1.70 4.57 30.68 0.14 -1.56 16 10 C -0.11 -2.58 6.09 30.65 0.19 -2.39 16 11 C 0.05 1.45 5.11 86.33 0.44 1.89 16 12 N -0.54 -16.61 4.40 -900.97 -3.96 -20.57 16 13 C 0.05 1.56 5.45 85.56 0.47 2.03 16 14 C 0.49 21.21 7.50 87.66 0.66 21.87 16 15 O -0.58 -30.36 14.32 -3.05 -0.04 -30.41 16 16 N -0.71 -31.61 5.55 -466.79 -2.59 -34.20 16 17 C 0.27 15.38 5.43 85.63 0.46 15.85 16 18 C -0.56 -31.16 9.28 25.60 0.24 -30.93 16 19 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 20 C 0.00 0.16 5.46 84.65 0.46 0.62 16 21 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 22 Si 0.99 43.11 29.54 68.60 2.03 45.13 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 26 C 0.05 1.26 4.08 86.32 0.35 1.62 16 27 H 0.08 0.62 8.11 -2.39 -0.02 0.61 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.09 0.61 6.49 -2.39 -0.02 0.59 16 30 H 0.09 0.62 6.38 -2.39 -0.02 0.61 16 31 H 0.06 0.65 6.41 -2.39 -0.02 0.63 16 32 H 0.08 0.62 8.11 -2.39 -0.02 0.60 16 33 H 0.42 1.87 9.10 -74.05 -0.67 1.19 16 34 H 0.08 1.03 6.32 -2.38 -0.02 1.01 16 35 H 0.09 1.05 6.58 -2.39 -0.02 1.04 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.06 2.13 5.78 -2.39 -0.01 2.11 16 39 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.11 3.16 7.99 -2.39 -0.02 3.14 16 41 H 0.08 2.12 8.12 -2.38 -0.02 2.10 16 42 H 0.41 14.95 8.32 -92.71 -0.77 14.18 16 43 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 44 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 45 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 46 H 0.08 2.18 5.42 -2.39 -0.01 2.17 16 47 H 0.05 0.95 6.38 -2.39 -0.02 0.94 16 Total: -1.00 -80.74 365.68 -0.12 -80.87 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -0.45 Total: 22.12 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 4.97 Total: 14.54 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -6.27 Total: -111.96 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -0.41 Total: -50.70 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -80.74 -0.12 -80.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135030973.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.001 kcal (2) G-P(sol) polarization free energy of solvation -80.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds