Wall clock time and date at job start Fri Apr 10 2020 18:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47438 * 2 1 4 4 C 1.50701 * 109.46934 * 240.00111 * 2 1 3 5 5 O 1.20823 * 120.00507 * 240.00177 * 4 2 1 6 6 O 1.34232 * 119.99487 * 59.99992 * 4 2 1 7 7 C 1.52998 * 109.47254 * 120.00256 * 2 1 3 8 8 H 1.09000 * 109.50368 * 299.91875 * 7 2 1 9 9 C 1.53126 * 109.50091 * 59.99583 * 7 2 1 10 10 C 1.53119 * 109.15901 * 177.63515 * 9 7 2 11 11 C 1.53048 * 109.27960 * 302.34826 * 10 9 7 12 12 N 1.46842 * 109.52034 * 59.17683 * 11 10 9 13 13 C 1.46910 * 110.99593 * 174.16151 * 12 11 10 14 14 C 1.50700 * 109.46812 * 66.05033 * 13 12 11 15 15 O 1.21286 * 120.00120 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00000 * 179.97438 * 14 13 12 17 17 C 1.46491 * 120.00091 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46957 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.46848 * 111.20096 * 298.25932 * 12 11 10 27 27 H 1.09008 * 109.46991 * 300.00125 * 1 2 3 28 28 H 1.09001 * 109.47148 * 59.99473 * 1 2 3 29 29 H 1.09000 * 109.47637 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47336 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47381 * 300.00384 * 3 2 1 32 32 H 1.09007 * 109.46680 * 60.00242 * 3 2 1 33 33 H 0.96707 * 116.99422 * 180.02562 * 6 4 2 34 34 H 1.09001 * 109.52204 * 57.73130 * 9 7 2 35 35 H 1.08997 * 109.57687 * 297.57194 * 9 7 2 36 36 H 1.08992 * 109.50615 * 182.40879 * 10 9 7 37 37 H 1.09000 * 109.53701 * 62.30660 * 10 9 7 38 38 H 1.09003 * 109.45688 * 299.16129 * 11 10 9 39 39 H 1.08999 * 109.45408 * 179.19093 * 11 10 9 40 40 H 1.08998 * 109.47017 * 306.05096 * 13 12 11 41 41 H 1.09002 * 109.46670 * 186.04506 * 13 12 11 42 42 H 0.97003 * 119.99349 * 359.97438 * 16 14 13 43 43 H 1.09004 * 109.47166 * 60.00164 * 17 16 14 44 44 H 1.08994 * 109.47507 * 299.99870 * 17 16 14 45 45 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.45931 * 181.76104 * 26 12 11 47 47 H 1.09000 * 109.46186 * 301.72864 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7269 -1.6928 -1.1198 6 8 1.7079 -0.2517 -2.4496 7 6 2.0400 -0.7213 1.2492 8 1 1.6782 -0.2071 2.1395 9 6 1.5299 -2.1651 1.2499 10 6 2.0928 -2.8963 2.4717 11 6 3.6217 -2.8380 2.4355 12 7 4.0595 -1.4364 2.4369 13 6 5.5217 -1.3417 2.5422 14 6 6.1529 -1.9132 1.2988 15 8 5.4535 -2.3562 0.4124 16 7 7.4945 -1.9320 1.1717 17 6 8.1081 -2.4881 -0.0368 18 6 9.6080 -2.3897 0.0706 19 1 10.0592 -1.9567 0.9512 20 6 10.4047 -2.8582 -0.9526 21 7 9.8553 -3.3858 -2.0248 22 14 12.2641 -2.7433 -0.8161 23 1 12.7213 -3.5068 0.3727 24 1 12.8862 -3.3113 -2.0391 25 1 12.6630 -1.3199 -0.6738 26 6 3.5703 -0.7261 1.2484 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 2.0533 -0.7409 -3.2089 34 1 1.8591 -2.6681 0.3407 35 1 0.4408 -2.1676 1.2936 36 1 1.7678 -3.9366 2.4549 37 1 1.7318 -2.4170 3.3817 38 1 3.9826 -3.3304 1.5325 39 1 4.0252 -3.3455 3.3118 40 1 5.8604 -1.9035 3.4127 41 1 5.8113 -0.2963 2.6491 42 1 8.0538 -1.5774 1.8805 43 1 7.7689 -1.9269 -0.9076 44 1 7.8189 -3.5336 -0.1430 45 1 10.4158 -3.7151 -2.7448 46 1 3.9367 0.3004 1.2623 47 1 3.9315 -1.2283 0.3509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135030990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:23 Heat of formation + Delta-G solvation = -157.882177 kcal Electronic energy + Delta-G solvation = -27929.694671 eV Core-core repulsion = 24110.961366 eV Total energy + Delta-G solvation = -3818.733306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.15420 -40.93499 -39.10396 -37.06907 -36.71921 -35.99208 -34.38740 -33.78343 -30.79629 -29.99604 -28.65607 -27.54648 -25.39720 -24.86436 -24.12246 -23.52353 -21.48528 -20.94981 -20.60066 -18.95506 -18.74916 -17.61381 -17.40887 -17.00822 -16.76495 -16.57027 -16.36423 -15.83588 -15.59398 -15.29291 -15.07321 -14.69085 -14.59100 -14.44204 -14.14370 -14.05348 -13.72995 -13.49898 -13.19942 -13.06099 -12.97597 -12.94289 -12.72884 -12.57013 -12.49717 -12.35823 -12.27509 -12.13625 -11.81113 -11.54498 -11.50890 -11.24912 -11.14519 -10.99001 -10.85293 -10.79524 -9.78352 -9.01058 -8.32178 -6.50173 1.30465 1.39527 1.44280 1.52534 1.77291 2.17350 2.30671 2.64201 2.92474 3.01826 3.59232 3.70377 3.93338 4.01788 4.14821 4.19355 4.21395 4.30555 4.42847 4.51640 4.57115 4.65819 4.77015 4.79091 4.85531 4.90796 4.93617 4.97724 5.04765 5.06517 5.09675 5.17722 5.18985 5.21506 5.29922 5.37043 5.42327 5.49411 5.52928 5.70050 5.81595 5.91205 6.02405 6.10777 6.61746 6.92450 7.06339 7.20201 7.54092 8.79586 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.018447 B = 0.003451 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.520719 B = 8112.121402 C = 8871.110080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.044 4.044 3 C -0.141 4.141 4 C 0.466 3.534 5 O -0.525 6.525 6 O -0.516 6.516 7 C -0.053 4.053 8 H 0.109 0.891 9 C -0.130 4.130 10 C -0.103 4.103 11 C 0.040 3.960 12 N -0.498 5.498 13 C 0.041 3.959 14 C 0.453 3.547 15 O -0.578 6.578 16 N -0.710 5.710 17 C 0.271 3.729 18 C -0.557 4.557 19 H 0.085 0.915 20 C 0.002 3.998 21 N -0.933 5.933 22 Si 0.987 3.013 23 H -0.261 1.261 24 H -0.285 1.285 25 H -0.260 1.260 26 C 0.011 3.989 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.418 0.582 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.017 0.983 39 H 0.076 0.924 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.407 0.593 43 H -0.021 1.021 44 H -0.021 1.021 45 H 0.268 0.732 46 H 0.064 0.936 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.577 10.256 10.007 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.045 4.045 3 C -0.198 4.198 4 C 0.309 3.691 5 O -0.414 6.414 6 O -0.329 6.329 7 C -0.072 4.072 8 H 0.127 0.873 9 C -0.167 4.167 10 C -0.141 4.141 11 C -0.088 4.088 12 N -0.220 5.220 13 C -0.090 4.090 14 C 0.239 3.761 15 O -0.459 6.459 16 N -0.361 5.361 17 C 0.148 3.852 18 C -0.595 4.595 19 H 0.103 0.897 20 C -0.198 4.198 21 N -0.571 5.571 22 Si 0.810 3.190 23 H -0.185 1.185 24 H -0.211 1.211 25 H -0.185 1.185 26 C -0.116 4.116 27 H 0.116 0.884 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.278 0.722 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.035 0.965 39 H 0.095 0.905 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.243 0.757 43 H -0.004 1.004 44 H -0.003 1.003 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.214 10.034 9.992 24.680 hybrid contribution 2.132 -1.169 -1.816 3.034 sum -18.082 8.865 8.177 21.735 Atomic orbital electron populations 1.21905 0.89342 1.03204 1.04798 1.20659 0.99317 0.96597 0.87964 1.21931 1.00747 0.92220 1.04874 1.24260 0.76623 0.82467 0.85754 1.90821 1.35871 1.27647 1.87032 1.84460 1.72180 1.59233 1.17038 1.21051 0.93848 0.96005 0.96248 0.87332 1.21910 1.00522 0.95482 0.98792 1.21467 0.93091 1.00531 0.98972 1.22242 0.97405 0.89088 1.00081 1.62522 1.07097 1.13501 1.38866 1.22471 0.88425 1.04119 0.94025 1.23053 0.82646 0.79434 0.90929 1.90671 1.61828 1.48871 1.44488 1.46371 1.06802 1.61325 1.21601 1.18406 0.92841 0.91142 0.82806 1.21614 0.90626 1.42036 1.05242 0.89733 1.26133 1.05541 0.93834 0.94257 1.70156 1.38263 1.40493 1.08238 0.85176 0.76754 0.79235 0.77860 1.18525 1.21054 1.18481 1.22911 0.96054 0.98044 0.94614 0.88435 0.90753 0.92183 0.93745 0.90659 0.88249 0.72152 0.93304 0.89943 0.91466 0.89559 0.96506 0.90528 0.85561 0.85636 0.75746 1.00355 1.00278 0.92286 0.91786 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.05 71.98 0.58 -1.29 16 2 C -0.04 -0.89 0.53 -52.93 -0.03 -0.92 16 3 C -0.14 -2.41 8.06 71.98 0.58 -1.83 16 4 C 0.47 13.00 6.33 71.24 0.45 13.45 16 5 O -0.53 -20.16 12.11 21.97 0.27 -19.90 16 6 O -0.52 -11.54 13.23 -51.43 -0.68 -12.22 16 7 C -0.05 -1.22 1.68 -10.74 -0.02 -1.24 16 8 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 9 C -0.13 -3.23 4.58 30.68 0.14 -3.09 16 10 C -0.10 -2.48 6.09 30.65 0.19 -2.29 16 11 C 0.04 1.22 5.09 86.33 0.44 1.66 16 12 N -0.50 -14.36 4.86 -900.90 -4.38 -18.74 16 13 C 0.04 1.18 5.86 85.56 0.50 1.68 16 14 C 0.45 18.88 7.25 87.66 0.64 19.51 16 15 O -0.58 -29.69 11.62 -3.05 -0.04 -29.73 16 16 N -0.71 -31.32 5.55 -466.80 -2.59 -33.91 16 17 C 0.27 15.64 5.43 85.64 0.46 16.10 16 18 C -0.56 -31.35 9.28 25.60 0.24 -31.11 16 19 H 0.08 4.26 7.60 -2.91 -0.02 4.24 16 20 C 0.00 0.10 5.46 84.66 0.46 0.56 16 21 N -0.93 -58.14 13.29 21.45 0.28 -57.85 16 22 Si 0.99 43.24 29.54 68.60 2.03 45.27 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 24 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 26 C 0.01 0.34 3.60 86.32 0.31 0.65 16 27 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.07 0.95 8.11 -2.39 -0.02 0.93 16 29 H 0.06 0.88 6.49 -2.39 -0.02 0.87 16 30 H 0.04 0.95 6.46 -2.39 -0.02 0.93 16 31 H 0.07 1.18 8.11 -2.39 -0.02 1.16 16 32 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.42 7.13 9.10 -74.05 -0.67 6.46 16 34 H 0.05 1.63 5.48 -2.39 -0.01 1.62 16 35 H 0.08 1.58 6.57 -2.39 -0.02 1.56 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.02 0.69 6.00 -2.39 -0.01 0.67 16 39 H 0.08 2.07 8.06 -2.39 -0.02 2.05 16 40 H 0.13 2.92 8.06 -2.39 -0.02 2.90 16 41 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 42 H 0.41 14.72 8.32 -92.71 -0.77 13.95 16 43 H -0.02 -1.41 8.14 -2.38 -0.02 -1.43 16 44 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 45 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 46 H 0.06 1.84 6.47 -2.39 -0.02 1.82 16 47 H 0.07 3.04 2.71 -2.39 -0.01 3.04 16 Total: -1.00 -82.11 359.78 -0.61 -82.72 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: -0.45 Total: 32.51 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 4.94 Total: 11.84 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -6.68 Total: -110.50 kcal Atomic # 8 Polarization: -61.40 SS G_CDS: -0.45 Total: -61.85 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -82.11 -0.61 -82.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135030990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.160 kcal (2) G-P(sol) polarization free energy of solvation -82.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds