Wall clock time and date at job start Fri Apr 10 2020 18:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 O 1.45206 * 109.47226 * 239.99648 * 2 1 3 6 6 C 1.34232 * 116.99541 * 60.00509 * 5 2 1 7 7 O 1.20829 * 119.99897 * 359.97438 * 6 5 2 8 8 C 1.50693 * 120.00089 * 180.02562 * 6 5 2 9 9 H 1.09005 * 109.50604 * 60.07460 * 8 6 5 10 10 C 1.53121 * 109.50278 * 299.99575 * 8 6 5 11 11 C 1.53121 * 109.15937 * 182.40321 * 10 8 6 12 12 C 1.53032 * 109.27923 * 57.65884 * 11 10 8 13 13 N 1.46849 * 109.52127 * 300.81589 * 12 11 10 14 14 C 1.46907 * 111.00101 * 185.84077 * 13 12 11 15 15 C 1.50703 * 109.46646 * 293.95353 * 14 13 12 16 16 O 1.21287 * 120.00538 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99527 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99932 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99760 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99917 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99878 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99879 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47422 * 89.99957 * 22 20 18 24 24 H 1.48499 * 109.47236 * 210.00394 * 22 20 18 25 25 H 1.48504 * 109.47144 * 330.00082 * 22 20 18 26 26 C 1.46853 * 111.19693 * 61.74480 * 13 12 11 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 36 36 H 1.09001 * 109.52125 * 302.30988 * 10 8 6 37 37 H 1.09001 * 109.52009 * 62.43598 * 10 8 6 38 38 H 1.09006 * 109.50032 * 177.59712 * 11 10 8 39 39 H 1.08996 * 109.50536 * 297.67155 * 11 10 8 40 40 H 1.08999 * 109.46761 * 60.83146 * 12 11 10 41 41 H 1.09002 * 109.46456 * 180.80541 * 12 11 10 42 42 H 1.08996 * 109.46982 * 53.95204 * 14 13 12 43 43 H 1.08994 * 109.47095 * 173.95952 * 14 13 12 44 44 H 0.97003 * 120.00242 * 0.02562 * 17 15 14 45 45 H 0.97005 * 119.99712 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.45892 * 178.24401 * 26 13 12 47 47 H 1.08998 * 109.46205 * 58.27444 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 2.0140 -0.6846 -1.1856 6 6 1.6534 -0.1744 -2.3736 7 8 0.9560 0.8111 -2.4213 8 6 2.1173 -0.8316 -3.6479 9 1 1.7522 -1.8581 -3.6819 10 6 3.6478 -0.8316 -3.6952 11 6 4.1096 -1.4464 -5.0194 12 6 3.5093 -0.6523 -6.1817 13 7 2.0439 -0.6831 -6.0919 14 6 1.4310 -0.0486 -7.2667 15 6 1.7591 1.4222 -7.2715 16 8 2.4372 1.8954 -6.3841 17 7 1.2999 2.2117 -8.2626 18 6 1.5980 3.5500 -8.2669 19 1 2.2010 3.9714 -7.4762 20 6 1.1241 4.3640 -9.2884 21 7 0.3899 3.8513 -10.2501 22 14 1.5307 6.1872 -9.2946 23 1 2.7954 6.4099 -10.0404 24 1 0.4302 6.9377 -9.9509 25 1 1.6899 6.6636 -7.8970 26 6 1.5747 -0.0553 -4.8500 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -0.2075 2.1393 36 1 4.0145 0.1922 -3.6214 37 1 4.0379 -1.4191 -2.8641 38 1 5.1975 -1.4102 -5.0775 39 1 3.7765 -2.4826 -5.0753 40 1 3.8545 0.3804 -6.1328 41 1 3.8247 -1.0961 -7.1260 42 1 1.8204 -0.5108 -8.1738 43 1 0.3497 -0.1795 -7.2275 44 1 0.7580 1.8333 -8.9726 45 1 0.0594 4.4196 -10.9635 46 1 0.4850 -0.0657 -4.8271 47 1 1.9290 0.9746 -4.8073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156717441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:26 Heat of formation + Delta-G solvation = -128.109630 kcal Electronic energy + Delta-G solvation = -27400.140599 eV Core-core repulsion = 23582.698328 eV Total energy + Delta-G solvation = -3817.442271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93721 -39.35066 -37.53310 -36.62011 -34.31832 -33.96763 -32.93602 -31.28109 -30.84128 -27.57317 -27.51663 -27.36947 -24.66582 -24.60182 -22.67919 -21.68779 -19.95707 -19.31350 -19.17074 -17.87446 -17.05582 -16.55440 -16.03268 -15.95286 -15.28849 -14.75052 -14.61024 -14.53288 -14.22441 -14.04835 -13.89648 -13.73614 -13.43143 -13.05337 -12.85203 -12.62373 -12.44562 -12.26578 -12.04400 -12.02573 -11.85779 -11.57154 -11.46912 -11.39938 -11.24199 -11.14414 -10.78596 -10.61312 -10.46508 -10.41583 -10.39179 -10.26331 -10.17878 -9.72886 -9.46066 -9.20261 -7.98848 -7.40139 -6.44567 -3.85616 2.36139 2.66911 3.15175 3.24695 3.30861 3.83844 4.15702 4.32617 4.56523 4.60742 4.66371 4.76655 4.87491 4.99568 5.09064 5.21283 5.23898 5.29960 5.37911 5.39951 5.52027 5.58131 5.59732 5.70738 5.72158 5.76830 5.81906 5.83269 5.91255 6.04404 6.05766 6.13164 6.16088 6.20648 6.22262 6.28724 6.33419 6.57071 6.62850 6.81032 7.35371 7.44747 7.52347 7.96211 8.02299 8.57042 9.14164 9.50254 10.01022 10.72059 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016254 B = 0.003379 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.271625 B = 8285.459579 C = 9303.933782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.115 3.885 3 C -0.184 4.184 4 C -0.139 4.139 5 O -0.352 6.352 6 C 0.469 3.531 7 O -0.495 6.495 8 C -0.073 4.073 9 H 0.107 0.893 10 C -0.108 4.108 11 C -0.109 4.109 12 C 0.037 3.963 13 N -0.514 5.514 14 C 0.043 3.957 15 C 0.406 3.594 16 O -0.592 6.592 17 N -0.556 5.556 18 C -0.301 4.301 19 H 0.102 0.898 20 C 0.024 3.976 21 N -0.899 5.899 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.270 1.270 26 C 0.049 3.951 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.393 0.607 45 H 0.272 0.728 46 H 0.069 0.931 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 -12.296 15.966 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.079 3.921 3 C -0.241 4.241 4 C -0.196 4.196 5 O -0.270 6.270 6 C 0.312 3.688 7 O -0.382 6.382 8 C -0.093 4.093 9 H 0.124 0.876 10 C -0.146 4.146 11 C -0.147 4.147 12 C -0.091 4.091 13 N -0.236 5.236 14 C -0.089 4.089 15 C 0.192 3.808 16 O -0.479 6.479 17 N -0.191 5.191 18 C -0.431 4.431 19 H 0.120 0.880 20 C -0.178 4.178 21 N -0.540 5.540 22 Si 0.756 3.244 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.079 4.079 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.226 0.774 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.899 -12.070 16.412 20.577 hybrid contribution -0.127 1.643 -0.509 1.724 sum 2.772 -10.427 15.903 19.217 Atomic orbital electron populations 1.22490 0.94168 1.02841 1.04532 1.22137 0.94339 0.92462 0.83146 1.22494 1.01678 0.95394 1.04560 1.21834 1.02152 1.00931 0.94688 1.86547 1.70042 1.55827 1.14623 1.23699 0.77275 0.82608 0.85250 1.90605 1.34930 1.25026 1.87599 1.21071 0.98014 1.01199 0.88970 0.87555 1.21522 0.92298 1.02162 0.98609 1.21529 0.99728 0.99739 0.93722 1.22279 0.87813 1.01211 0.97794 1.62371 1.07338 1.52561 1.01376 1.22030 1.00769 0.91805 0.94292 1.21088 0.85882 0.89025 0.84827 1.90395 1.43553 1.75833 1.38090 1.42049 1.45754 1.08612 1.22725 1.19717 1.30714 0.83305 1.09363 0.87982 1.25279 0.96462 1.00668 0.95406 1.69611 1.34940 1.36983 1.12436 0.85869 0.77947 0.81912 0.78651 1.20377 1.20854 1.19411 1.22234 0.99543 0.99551 0.86524 0.89637 0.91233 0.92108 0.91261 0.92034 0.89540 0.91589 0.91542 0.90555 0.91413 0.91091 0.91380 0.91410 0.91255 0.91484 0.89155 0.89218 0.77373 0.91786 0.91207 0.88524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 8.37 37.16 0.31 -1.69 16 2 C 0.12 1.29 1.13 -90.62 -0.10 1.19 16 3 C -0.18 -2.14 8.37 37.15 0.31 -1.83 16 4 C -0.14 -1.13 8.85 37.16 0.33 -0.80 16 5 O -0.35 -4.63 9.82 -39.26 -0.39 -5.01 16 6 C 0.47 7.07 6.57 36.00 0.24 7.30 16 7 O -0.49 -8.78 11.49 -18.75 -0.22 -8.99 16 8 C -0.07 -1.04 2.79 -91.69 -0.26 -1.30 16 9 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 10 C -0.11 -1.41 5.21 -26.61 -0.14 -1.55 16 11 C -0.11 -1.37 6.09 -26.65 -0.16 -1.53 16 12 C 0.04 0.58 5.09 -3.84 -0.02 0.56 16 13 N -0.51 -8.53 4.86 -236.11 -1.15 -9.67 16 14 C 0.04 0.76 5.86 -4.97 -0.03 0.73 16 15 C 0.41 9.37 7.20 -10.98 -0.08 9.29 16 16 O -0.59 -15.28 11.20 5.55 0.06 -15.22 16 17 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 18 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 21 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 22 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 26 C 0.05 0.86 3.55 -3.83 -0.01 0.85 16 27 H 0.08 1.16 5.89 -51.93 -0.31 0.85 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.26 5.89 -51.93 -0.31 0.96 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.35 6.00 -51.93 -0.31 1.04 16 41 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 42 H 0.09 1.43 8.06 -51.93 -0.42 1.02 16 43 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 47 H 0.10 2.11 5.30 -51.93 -0.28 1.83 16 LS Contribution 367.35 15.07 5.54 5.54 Total: -1.00 -30.89 367.35 -8.15 -39.04 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -7.79 Total: 12.76 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 0.15 Total: 3.23 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.48 Total: -47.51 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.54 Total: -29.22 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.89 -8.15 -39.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156717441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.074 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds