Wall clock time and date at job start Fri Apr 10 2020 18:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47269 * 2 1 4 4 C 1.53006 * 109.46886 * 239.99804 * 2 1 3 5 5 O 1.45201 * 109.46918 * 120.00194 * 2 1 3 6 6 C 1.34229 * 116.99954 * 59.99874 * 5 2 1 7 7 O 1.20823 * 120.00100 * 359.97438 * 6 5 2 8 8 C 1.50698 * 119.99611 * 179.97438 * 6 5 2 9 9 H 1.09000 * 109.50948 * 300.08061 * 8 6 5 10 10 C 1.53129 * 109.53784 * 60.13831 * 8 6 5 11 11 C 1.53123 * 109.15931 * 177.57396 * 10 8 6 12 12 C 1.53039 * 109.31189 * 302.40768 * 11 10 8 13 13 N 1.46842 * 109.52266 * 59.15550 * 12 11 10 14 14 C 1.46910 * 110.99703 * 174.16402 * 13 12 11 15 15 C 1.50695 * 109.47054 * 66.04883 * 14 13 12 16 16 O 1.21292 * 120.00352 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99653 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99774 * 179.97438 * 17 15 14 19 19 H 1.08005 * 120.00175 * 359.97438 * 18 17 15 20 20 C 1.38944 * 120.00083 * 179.97438 * 18 17 15 21 21 N 1.31410 * 119.99985 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00312 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46677 * 59.99671 * 22 20 18 24 24 H 1.48492 * 109.47093 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46673 * 300.00103 * 22 20 18 26 26 C 1.46849 * 111.20050 * 298.25785 * 13 12 11 27 27 H 1.09000 * 109.46955 * 299.99919 * 1 2 3 28 28 H 1.09000 * 109.46658 * 60.00354 * 1 2 3 29 29 H 1.09001 * 109.46893 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47479 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46865 * 300.00212 * 3 2 1 32 32 H 1.09000 * 109.46833 * 59.99649 * 3 2 1 33 33 H 1.08998 * 109.47048 * 299.99850 * 4 2 1 34 34 H 1.08997 * 109.47110 * 60.00382 * 4 2 1 35 35 H 1.08998 * 109.46764 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.49266 * 57.69087 * 10 8 6 37 37 H 1.08995 * 109.55725 * 297.49834 * 10 8 6 38 38 H 1.09002 * 109.50371 * 182.44317 * 11 10 8 39 39 H 1.09003 * 109.50070 * 62.36477 * 11 10 8 40 40 H 1.08995 * 109.46501 * 179.17754 * 12 11 10 41 41 H 1.09009 * 109.45500 * 299.14277 * 12 11 10 42 42 H 1.08996 * 109.46709 * 186.04933 * 14 13 12 43 43 H 1.09002 * 109.46552 * 306.04948 * 14 13 12 44 44 H 0.96989 * 120.00369 * 359.97438 * 17 15 14 45 45 H 0.96998 * 120.00302 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.46071 * 181.75754 * 26 13 12 47 47 H 1.09002 * 109.46350 * 301.73871 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6533 -1.9684 1.3378 7 8 0.9559 -2.5025 0.5082 8 6 2.1182 -2.7437 2.5435 9 1 3.2077 -2.7718 2.5603 10 6 1.6056 -2.0657 3.8172 11 6 2.0313 -2.8932 5.0332 12 6 1.4870 -4.3166 4.8925 13 7 2.0075 -4.9214 3.6598 14 6 1.6176 -6.3344 3.5613 15 6 0.1220 -6.4331 3.4053 16 8 -0.5529 -5.4256 3.3791 17 7 -0.4658 -7.6410 3.2957 18 6 -1.8265 -7.7309 3.1543 19 1 -2.4274 -6.8337 3.1310 20 6 -2.4325 -8.9760 3.0408 21 7 -1.7013 -10.0676 3.0686 22 14 -4.2866 -9.0986 2.8488 23 1 -4.7050 -8.3823 1.6170 24 1 -4.6805 -10.5268 2.7484 25 1 -4.9479 -8.4838 4.0277 26 6 1.5713 -4.1714 2.4750 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6767 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 0.5180 -2.0019 3.7828 37 1 2.0280 -1.0638 3.8926 38 1 1.6323 -2.4390 5.9403 39 1 3.1194 -2.9237 5.0898 40 1 1.8009 -4.9120 5.7498 41 1 0.3981 -4.2864 4.8506 42 1 2.1038 -6.7859 2.6966 43 1 1.9240 -6.8596 4.4660 44 1 0.0738 -8.4467 3.3170 45 1 -2.1242 -10.9369 2.9891 46 1 1.9466 -4.6613 1.5766 47 1 0.4821 -4.1418 2.4446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156717565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:28 Heat of formation + Delta-G solvation = -148.741117 kcal Electronic energy + Delta-G solvation = -27399.963910 eV Core-core repulsion = 23581.626990 eV Total energy + Delta-G solvation = -3818.336919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.08803 -40.90408 -39.00112 -37.86592 -36.04911 -35.20218 -34.27095 -33.30691 -32.04938 -28.97727 -28.41877 -28.29991 -26.53840 -25.81070 -24.06214 -22.77724 -21.34866 -20.82917 -20.44299 -19.83995 -18.22881 -17.83495 -17.57115 -17.11690 -16.74883 -16.35222 -16.14270 -15.73352 -15.68733 -15.45899 -15.26026 -15.05496 -14.64447 -14.40178 -14.10562 -13.75752 -13.50249 -13.37884 -13.28159 -13.11292 -13.02092 -12.95530 -12.87113 -12.60862 -12.49573 -12.48657 -12.39752 -12.16890 -12.05934 -11.79371 -11.65234 -11.42063 -11.38260 -11.36240 -10.97785 -10.86464 -10.02041 -9.05066 -8.49036 -5.99026 1.18853 1.34455 1.36834 1.47745 1.61814 1.99210 2.26120 2.99985 3.16561 3.23494 3.52493 3.72059 3.73702 3.78209 3.90244 3.94187 4.13707 4.18705 4.37644 4.40881 4.50199 4.55510 4.56667 4.58748 4.64362 4.72556 4.77272 4.80213 4.86816 4.88671 4.92920 5.01848 5.07284 5.10833 5.18027 5.21492 5.23137 5.29149 5.36348 5.46649 5.54008 5.85842 6.01073 6.07371 6.56106 6.82063 7.08751 7.52005 8.07828 8.66277 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.003378 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.667605 B = 8287.908579 C = 9305.645811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 C -0.132 4.132 4 C -0.181 4.181 5 O -0.348 6.348 6 C 0.470 3.530 7 O -0.530 6.530 8 C -0.068 4.068 9 H 0.135 0.865 10 C -0.104 4.104 11 C -0.100 4.100 12 C 0.033 3.967 13 N -0.496 5.496 14 C 0.049 3.951 15 C 0.406 3.594 16 O -0.621 6.621 17 N -0.570 5.570 18 C -0.335 4.335 19 H 0.075 0.925 20 C -0.011 4.011 21 N -0.918 5.918 22 Si 0.990 3.010 23 H -0.275 1.275 24 H -0.267 1.267 25 H -0.271 1.271 26 C 0.056 3.944 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.026 0.974 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.396 0.604 45 H 0.279 0.721 46 H 0.059 0.941 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.414 18.852 -1.567 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.069 3.931 3 C -0.189 4.189 4 C -0.238 4.238 5 O -0.265 6.265 6 C 0.314 3.686 7 O -0.419 6.419 8 C -0.087 4.087 9 H 0.152 0.848 10 C -0.141 4.141 11 C -0.138 4.138 12 C -0.095 4.095 13 N -0.219 5.219 14 C -0.083 4.083 15 C 0.193 3.807 16 O -0.509 6.509 17 N -0.206 5.206 18 C -0.465 4.465 19 H 0.093 0.907 20 C -0.211 4.211 21 N -0.558 5.558 22 Si 0.814 3.186 23 H -0.201 1.201 24 H -0.192 1.192 25 H -0.196 1.196 26 C -0.073 4.073 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.044 0.956 42 H 0.125 0.875 43 H 0.136 0.864 44 H 0.230 0.770 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.234 19.205 -1.844 22.845 hybrid contribution -2.058 -1.175 -0.511 2.424 sum 10.176 18.030 -2.355 20.837 Atomic orbital electron populations 1.22477 0.94794 1.02966 1.03767 1.22510 0.94111 0.93861 0.82660 1.21850 1.02616 0.90238 1.04220 1.22461 1.02080 1.01714 0.97525 1.86530 1.69577 1.24569 1.45822 1.23857 0.76657 0.80937 0.87141 1.90614 1.36108 1.70687 1.44517 1.21045 1.03934 0.92790 0.90947 0.84769 1.21526 0.99934 1.00207 0.92467 1.21530 1.02562 0.92375 0.97324 1.22368 0.98133 0.97087 0.91864 1.62495 1.56327 1.00505 1.02523 1.22164 0.88873 0.91723 1.05509 1.22197 0.92603 0.83303 0.82611 1.90418 1.66970 1.35974 1.57535 1.42109 1.07467 1.07540 1.63507 1.19589 0.83919 0.93715 1.49281 0.90727 1.26014 1.04692 0.94102 0.96283 1.69656 1.37948 0.98404 1.49834 0.85040 0.77093 0.77703 0.78809 1.20090 1.19165 1.19620 1.22011 1.00181 0.92238 0.92825 0.91780 0.89011 0.93238 0.90678 0.88374 0.91103 0.92882 0.89127 0.91105 0.94201 0.88146 0.89404 0.88867 0.89887 0.95596 0.87467 0.86376 0.76960 0.91198 0.92209 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.23 8.37 71.98 0.60 -3.62 16 2 C 0.10 2.20 1.13 -10.79 -0.01 2.19 16 3 C -0.13 -1.76 8.85 71.98 0.64 -1.12 16 4 C -0.18 -3.80 8.37 71.98 0.60 -3.19 16 5 O -0.35 -8.75 9.82 -51.40 -0.50 -9.25 16 6 C 0.47 14.31 6.57 71.24 0.47 14.78 16 7 O -0.53 -19.92 11.48 21.97 0.25 -19.67 16 8 C -0.07 -1.89 2.79 -11.49 -0.03 -1.92 16 9 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 10 C -0.10 -2.56 5.22 30.68 0.16 -2.40 16 11 C -0.10 -2.25 6.09 30.65 0.19 -2.07 16 12 C 0.03 1.03 5.10 86.33 0.44 1.47 16 13 N -0.50 -16.12 4.86 -900.91 -4.38 -20.50 16 14 C 0.05 1.72 5.86 85.55 0.50 2.22 16 15 C 0.41 19.42 7.20 87.65 0.63 20.05 16 16 O -0.62 -34.00 11.20 -3.07 -0.03 -34.03 16 17 N -0.57 -29.76 5.29 -306.98 -1.62 -31.38 16 18 C -0.34 -19.47 9.68 84.04 0.81 -18.66 16 19 H 0.07 4.65 7.16 -2.91 -0.02 4.62 16 20 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 21 N -0.92 -50.32 13.05 21.66 0.28 -50.04 16 22 Si 0.99 44.01 29.55 68.60 2.03 46.04 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 26 C 0.06 2.00 3.55 86.32 0.31 2.31 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.05 1.53 5.89 -2.39 -0.01 1.52 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 1.49 5.89 -2.39 -0.01 1.47 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 36 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.08 2.28 8.06 -2.39 -0.02 2.26 16 41 H 0.03 1.04 6.00 -2.38 -0.01 1.02 16 42 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 43 H 0.12 3.54 8.06 -2.39 -0.02 3.52 16 44 H 0.40 19.67 7.90 -92.72 -0.73 18.94 16 45 H 0.28 14.31 8.31 -92.71 -0.77 13.53 16 46 H 0.06 2.22 8.10 -2.39 -0.02 2.20 16 47 H 0.05 2.25 5.30 -2.39 -0.01 2.23 16 Total: -1.00 -71.52 367.36 2.03 -69.49 By element: Atomic # 1 Polarization: 39.21 SS G_CDS: 0.23 Total: 39.44 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 5.77 Total: 9.90 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -5.72 Total: -101.92 kcal Atomic # 8 Polarization: -62.66 SS G_CDS: -0.29 Total: -62.95 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -71.52 2.03 -69.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156717565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.250 kcal (2) G-P(sol) polarization free energy of solvation -71.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds