Wall clock time and date at job start Fri Apr 10 2020 18:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58745 * 2 1 4 4 C 1.53202 * 109.58566 * 120.42581 * 2 1 3 5 5 C 1.53043 * 109.31073 * 65.15357 * 4 2 1 6 6 H 1.09002 * 109.44642 * 301.34890 * 5 4 2 7 7 N 1.46900 * 109.45873 * 181.38607 * 5 4 2 8 8 C 1.46897 * 110.99800 * 154.92954 * 7 5 4 9 9 C 1.50706 * 109.46979 * 179.97438 * 8 7 5 10 10 O 1.21289 * 119.99884 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99839 * 179.97438 * 9 8 7 12 12 C 1.37099 * 120.00047 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99545 * 0.02562 * 12 11 9 14 14 C 1.38946 * 120.00390 * 180.27753 * 12 11 9 15 15 N 1.31410 * 119.99821 * 359.72657 * 14 12 11 16 16 Si 1.86801 * 120.00173 * 179.72689 * 14 12 11 17 17 H 1.48500 * 109.46938 * 89.99791 * 16 14 12 18 18 H 1.48498 * 109.47075 * 210.00138 * 16 14 12 19 19 H 1.48494 * 109.47106 * 330.00156 * 16 14 12 20 20 C 1.53035 * 109.54050 * 61.36347 * 5 4 2 21 21 C 1.53198 * 109.31418 * 298.63622 * 20 5 4 22 22 N 1.46926 * 109.58884 * 239.71522 * 2 1 3 23 23 C 1.34768 * 120.63473 * 113.80078 * 22 2 1 24 24 O 1.21354 * 119.99702 * 352.93673 * 23 22 2 25 25 C 1.49446 * 120.00415 * 172.93543 * 23 22 2 26 26 N 1.34780 * 120.00036 * 173.60538 * 25 23 22 27 27 O 1.21348 * 120.00126 * 353.59864 * 25 23 22 28 28 H 1.08995 * 109.47040 * 180.28359 * 1 2 3 29 29 H 1.08998 * 109.47192 * 300.28625 * 1 2 3 30 30 H 1.08999 * 109.47018 * 60.28563 * 1 2 3 31 31 H 1.08997 * 109.49282 * 305.20331 * 4 2 1 32 32 H 1.08993 * 109.49584 * 185.10086 * 4 2 1 33 33 H 1.00902 * 110.99716 * 30.97722 * 7 5 4 34 34 H 1.08995 * 109.47335 * 59.99940 * 8 7 5 35 35 H 1.09000 * 109.47421 * 300.00207 * 8 7 5 36 36 H 0.97006 * 119.99994 * 0.02562 * 11 9 8 37 37 H 0.97003 * 120.00007 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.49794 * 58.58371 * 20 5 4 39 39 H 1.09002 * 109.50020 * 178.65167 * 20 5 4 40 40 H 1.09005 * 109.58456 * 174.41932 * 21 20 5 41 41 H 1.08994 * 109.58365 * 294.70283 * 21 20 5 42 42 H 0.96997 * 119.99897 * 0.02562 * 26 25 23 43 43 H 0.97001 * 119.99715 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 1.2446 5 6 1.6414 -2.2056 1.1674 6 1 0.5564 -2.2826 1.0964 7 7 2.1035 -2.9027 2.3751 8 6 1.2819 -4.0903 2.6443 9 6 1.7852 -4.7780 3.8873 10 8 2.7345 -4.3233 4.4898 11 7 1.1796 -5.8978 4.3298 12 6 1.6377 -6.5238 5.4603 13 1 2.4836 -6.1193 5.9963 14 6 1.0171 -7.6815 5.9133 15 7 -0.0123 -8.1734 5.2613 16 14 1.6461 -8.5386 7.4493 17 1 0.9471 -7.9944 8.6412 18 1 1.3846 -9.9966 7.3448 19 1 3.1066 -8.3060 7.5830 20 6 2.2800 -2.8464 -0.0669 21 6 1.7691 -2.1394 -1.3264 22 7 2.0226 -0.6981 -1.1953 23 6 2.6937 -0.0290 -2.1536 24 8 2.7856 1.1798 -2.0985 25 6 3.3247 -0.7757 -3.2839 26 7 3.8838 -0.1013 -4.3083 27 8 3.3339 -1.9891 -3.2795 28 1 -0.3633 -1.0276 0.0051 29 1 -0.3633 0.5183 0.8874 30 1 -0.3633 0.5094 -0.8925 31 1 1.6074 -0.2811 2.1365 32 1 3.1296 -0.6520 1.2906 33 1 2.1124 -2.2814 3.1701 34 1 1.3459 -4.7756 1.7991 35 1 0.2445 -3.7891 2.7899 36 1 0.4201 -6.2613 3.8481 37 1 -0.4458 -8.9814 5.5778 38 1 3.3639 -2.7475 -0.0086 39 1 2.0127 -3.9023 -0.1082 40 1 2.2945 -2.5248 -2.2002 41 1 0.6992 -2.3159 -1.4359 42 1 3.8769 0.8687 -4.3116 43 1 4.2937 -0.5860 -5.0418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754599414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:45 Heat of formation + Delta-G solvation = -88.414183 kcal Electronic energy + Delta-G solvation = -26153.075146 eV Core-core repulsion = 22233.813856 eV Total energy + Delta-G solvation = -3919.261291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.32326 -39.33675 -38.42399 -37.87533 -35.38022 -34.16438 -33.81413 -32.63113 -31.33741 -30.99227 -28.28746 -26.34641 -25.60159 -24.09432 -23.68565 -21.99740 -21.05222 -19.44851 -19.08109 -18.11065 -17.84994 -17.51185 -16.87619 -16.11354 -16.03454 -15.55520 -15.27560 -15.16385 -14.63519 -14.51705 -14.41830 -14.02490 -13.80528 -13.70786 -13.39858 -13.18389 -12.87403 -12.38734 -12.31060 -12.02439 -11.79143 -11.66705 -11.54754 -11.36680 -11.23447 -11.03130 -10.80894 -10.38679 -10.34667 -10.33314 -10.20078 -9.49801 -9.42310 -9.01311 -8.42368 -8.04264 -7.94374 -6.40508 -3.81228 1.04379 2.09588 2.84306 3.18751 3.27297 3.32732 3.33666 3.92445 4.05850 4.07364 4.28970 4.53162 4.73159 4.80669 4.99388 5.03073 5.17982 5.23939 5.27922 5.32634 5.33609 5.52226 5.60823 5.68320 5.73644 5.82751 5.85430 5.89762 5.98838 6.05700 6.16951 6.25846 6.36958 6.41546 6.51508 6.95775 7.26791 7.42361 7.56447 7.64668 7.69204 8.07864 8.62812 9.19318 9.55876 10.07483 10.77306 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.029085 B = 0.002431 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.477579 B =11516.201458 C =11875.053451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 H 0.102 0.898 4 C -0.130 4.130 5 C 0.085 3.915 6 H 0.046 0.954 7 N -0.664 5.664 8 C 0.051 3.949 9 C 0.441 3.559 10 O -0.583 6.583 11 N -0.564 5.564 12 C -0.299 4.299 13 H 0.103 0.897 14 C 0.022 3.978 15 N -0.902 5.902 16 Si 0.930 3.070 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.269 1.269 20 C -0.117 4.117 21 C 0.047 3.953 22 N -0.568 5.568 23 C 0.506 3.494 24 O -0.528 6.528 25 C 0.517 3.483 26 N -0.820 5.820 27 O -0.506 6.506 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.349 0.651 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.156 0.844 41 H 0.065 0.935 42 H 0.414 0.586 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.290 16.306 -19.078 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.120 0.880 4 C -0.168 4.168 5 C -0.026 4.026 6 H 0.064 0.936 7 N -0.297 5.297 8 C -0.082 4.082 9 C 0.227 3.773 10 O -0.467 6.467 11 N -0.201 5.201 12 C -0.428 4.428 13 H 0.120 0.880 14 C -0.180 4.180 15 N -0.544 5.544 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.156 4.156 21 C -0.074 4.074 22 N -0.300 5.300 23 C 0.288 3.712 24 O -0.405 6.405 25 C 0.297 3.703 26 N -0.386 5.386 27 O -0.382 6.382 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.169 0.831 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.172 0.828 41 H 0.083 0.917 42 H 0.245 0.755 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 1.265 15.950 -18.730 24.634 hybrid contribution -0.982 -0.181 0.586 1.158 sum 0.283 15.768 -18.144 24.040 Atomic orbital electron populations 1.22161 0.94399 1.02927 1.02604 1.21342 0.94571 0.97359 0.83367 0.87954 1.22107 1.02724 0.95085 0.96891 1.21584 0.97108 0.92179 0.91687 0.93597 1.60085 1.54545 1.09075 1.05974 1.21718 0.94482 0.93600 0.98354 1.19824 0.86449 0.83718 0.87345 1.90522 1.29757 1.66701 1.59734 1.41870 1.30093 1.22791 1.25367 1.19701 1.14559 1.06192 1.02365 0.87950 1.25259 0.96126 0.97107 0.99490 1.69613 1.21536 1.22932 1.40301 0.85857 0.79325 0.78095 0.81018 1.20443 1.20924 1.19406 1.21862 1.01809 0.99793 0.92157 1.23318 1.02402 0.77971 1.03691 1.48123 1.52062 1.10700 1.19137 1.19907 0.80195 0.87288 0.83780 1.90753 1.59894 1.13305 1.76586 1.20256 0.78996 0.87470 0.83621 1.43564 1.59344 1.12477 1.23182 1.90419 1.57087 1.13599 1.77127 0.91658 0.90979 0.92254 0.90311 0.90305 0.83057 0.89636 0.93963 0.77474 0.91893 0.90720 0.90406 0.82823 0.91672 0.75523 0.75600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.03 37.16 0.34 -1.03 16 2 C 0.14 1.34 3.19 -67.59 -0.22 1.13 16 3 H 0.10 1.05 7.05 -51.93 -0.37 0.68 16 4 C -0.13 -1.38 4.83 -26.60 -0.13 -1.51 16 5 C 0.08 1.03 2.25 -67.67 -0.15 0.88 16 6 H 0.05 0.54 6.15 -51.93 -0.32 0.22 16 7 N -0.66 -10.66 5.93 -107.95 -0.64 -11.30 16 8 C 0.05 0.90 5.96 -4.97 -0.03 0.87 16 9 C 0.44 10.48 7.82 -10.98 -0.09 10.40 16 10 O -0.58 -15.98 15.78 5.55 0.09 -15.89 16 11 N -0.56 -14.41 5.29 -10.96 -0.06 -14.46 16 12 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 13 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 14 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 15 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 16 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 C -0.12 -1.42 5.59 -26.61 -0.15 -1.57 16 21 C 0.05 0.49 5.85 -3.71 -0.02 0.47 16 22 N -0.57 -5.92 2.68 -165.72 -0.44 -6.36 16 23 C 0.51 5.41 7.74 -11.59 -0.09 5.32 16 24 O -0.53 -6.41 15.94 5.49 0.09 -6.33 16 25 C 0.52 4.77 8.05 -11.59 -0.09 4.68 16 26 N -0.82 -4.42 8.87 30.90 0.27 -4.14 16 27 O -0.51 -5.73 13.94 5.50 0.08 -5.65 16 28 H 0.06 0.56 5.73 -51.93 -0.30 0.27 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.35 5.77 8.03 -39.29 -0.32 5.46 16 34 H 0.09 1.41 7.41 -51.93 -0.38 1.02 16 35 H 0.04 0.67 8.05 -51.93 -0.42 0.25 16 36 H 0.39 9.55 7.90 -40.82 -0.32 9.22 16 37 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 0.96 7.43 -51.93 -0.39 0.58 16 40 H 0.16 1.71 3.78 -56.75 -0.21 1.49 16 41 H 0.06 0.61 7.51 -51.93 -0.39 0.22 16 42 H 0.41 1.69 8.32 -40.82 -0.34 1.35 16 43 H 0.41 1.37 8.93 -40.82 -0.36 1.01 16 LS Contribution 350.26 15.07 5.28 5.28 Total: -1.00 -33.61 350.26 -6.25 -39.85 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -5.74 Total: 15.20 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -0.87 Total: 11.58 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.14 Total: -60.22 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: 0.25 Total: -27.87 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.61 -6.25 -39.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754599414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.559 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds