Wall clock time and date at job start Fri Apr 10 2020 18:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58745 * 2 1 4 4 C 1.53202 * 109.58566 * 120.42581 * 2 1 3 5 5 C 1.53043 * 109.31073 * 65.15357 * 4 2 1 6 6 H 1.09002 * 109.44642 * 301.34890 * 5 4 2 7 7 N 1.46900 * 109.45873 * 181.38607 * 5 4 2 8 8 C 1.46897 * 110.99800 * 154.92954 * 7 5 4 9 9 C 1.50706 * 109.46979 * 179.97438 * 8 7 5 10 10 O 1.21289 * 119.99884 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99839 * 179.97438 * 9 8 7 12 12 C 1.37099 * 120.00047 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99545 * 0.02562 * 12 11 9 14 14 C 1.38946 * 120.00390 * 180.27753 * 12 11 9 15 15 N 1.31410 * 119.99821 * 359.72657 * 14 12 11 16 16 Si 1.86801 * 120.00173 * 179.72689 * 14 12 11 17 17 H 1.48500 * 109.46938 * 89.99791 * 16 14 12 18 18 H 1.48498 * 109.47075 * 210.00138 * 16 14 12 19 19 H 1.48494 * 109.47106 * 330.00156 * 16 14 12 20 20 C 1.53035 * 109.54050 * 61.36347 * 5 4 2 21 21 C 1.53198 * 109.31418 * 298.63622 * 20 5 4 22 22 N 1.46926 * 109.58884 * 239.71522 * 2 1 3 23 23 C 1.34768 * 120.63473 * 113.80078 * 22 2 1 24 24 O 1.21354 * 119.99702 * 352.93673 * 23 22 2 25 25 C 1.49446 * 120.00415 * 172.93543 * 23 22 2 26 26 N 1.34780 * 120.00036 * 173.60538 * 25 23 22 27 27 O 1.21348 * 120.00126 * 353.59864 * 25 23 22 28 28 H 1.08995 * 109.47040 * 180.28359 * 1 2 3 29 29 H 1.08998 * 109.47192 * 300.28625 * 1 2 3 30 30 H 1.08999 * 109.47018 * 60.28563 * 1 2 3 31 31 H 1.08997 * 109.49282 * 305.20331 * 4 2 1 32 32 H 1.08993 * 109.49584 * 185.10086 * 4 2 1 33 33 H 1.00902 * 110.99716 * 30.97722 * 7 5 4 34 34 H 1.08995 * 109.47335 * 59.99940 * 8 7 5 35 35 H 1.09000 * 109.47421 * 300.00207 * 8 7 5 36 36 H 0.97006 * 119.99994 * 0.02562 * 11 9 8 37 37 H 0.97003 * 120.00007 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.49794 * 58.58371 * 20 5 4 39 39 H 1.09002 * 109.50020 * 178.65167 * 20 5 4 40 40 H 1.09005 * 109.58456 * 174.41932 * 21 20 5 41 41 H 1.08994 * 109.58365 * 294.70283 * 21 20 5 42 42 H 0.96997 * 119.99897 * 0.02562 * 26 25 23 43 43 H 0.97001 * 119.99715 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 1.2446 5 6 1.6414 -2.2056 1.1674 6 1 0.5564 -2.2826 1.0964 7 7 2.1035 -2.9027 2.3751 8 6 1.2819 -4.0903 2.6443 9 6 1.7852 -4.7780 3.8873 10 8 2.7345 -4.3233 4.4898 11 7 1.1796 -5.8978 4.3298 12 6 1.6377 -6.5238 5.4603 13 1 2.4836 -6.1193 5.9963 14 6 1.0171 -7.6815 5.9133 15 7 -0.0123 -8.1734 5.2613 16 14 1.6461 -8.5386 7.4493 17 1 0.9471 -7.9944 8.6412 18 1 1.3846 -9.9966 7.3448 19 1 3.1066 -8.3060 7.5830 20 6 2.2800 -2.8464 -0.0669 21 6 1.7691 -2.1394 -1.3264 22 7 2.0226 -0.6981 -1.1953 23 6 2.6937 -0.0290 -2.1536 24 8 2.7856 1.1798 -2.0985 25 6 3.3247 -0.7757 -3.2839 26 7 3.8838 -0.1013 -4.3083 27 8 3.3339 -1.9891 -3.2795 28 1 -0.3633 -1.0276 0.0051 29 1 -0.3633 0.5183 0.8874 30 1 -0.3633 0.5094 -0.8925 31 1 1.6074 -0.2811 2.1365 32 1 3.1296 -0.6520 1.2906 33 1 2.1124 -2.2814 3.1701 34 1 1.3459 -4.7756 1.7991 35 1 0.2445 -3.7891 2.7899 36 1 0.4201 -6.2613 3.8481 37 1 -0.4458 -8.9814 5.5778 38 1 3.3639 -2.7475 -0.0086 39 1 2.0127 -3.9023 -0.1082 40 1 2.2945 -2.5248 -2.2002 41 1 0.6992 -2.3159 -1.4359 42 1 3.8769 0.8687 -4.3116 43 1 4.2937 -0.5860 -5.0418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754599414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:44 Heat of formation + Delta-G solvation = -117.561886 kcal Electronic energy + Delta-G solvation = -26154.339085 eV Core-core repulsion = 22233.813856 eV Total energy + Delta-G solvation = -3920.525230 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.12357 -40.36588 -39.86422 -39.00016 -36.56760 -35.82792 -34.78569 -33.46068 -33.26477 -32.21229 -29.29351 -27.75666 -26.53381 -25.67354 -24.64734 -22.93310 -21.86306 -21.10767 -20.10070 -19.85457 -18.88748 -18.32091 -17.87587 -17.36976 -16.91633 -16.83964 -16.43346 -16.28809 -16.21639 -15.69204 -15.43490 -15.29360 -15.17980 -14.85403 -14.47435 -14.27914 -13.87874 -13.77069 -13.48180 -13.37227 -13.01596 -12.97733 -12.84736 -12.49961 -12.43617 -12.39611 -12.12600 -12.08871 -11.72565 -11.50645 -11.26962 -10.93784 -10.34767 -10.22027 -10.01345 -9.84429 -9.30110 -8.46522 -5.95194 0.27553 1.37178 1.38071 1.41875 1.54697 2.05634 2.06905 2.29284 2.60838 2.89483 3.20852 3.42145 3.47922 3.69178 3.84698 3.99331 4.16740 4.21569 4.31392 4.39210 4.44837 4.51406 4.52744 4.61398 4.67362 4.83539 4.90086 5.00357 5.01184 5.07113 5.23631 5.32404 5.40342 5.41966 5.78718 5.91125 5.92028 6.13167 6.17586 6.42998 6.60560 6.68390 7.00892 7.12943 7.56655 8.12119 8.70909 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.029085 B = 0.002431 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.477579 B =11516.201458 C =11875.053451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 H 0.098 0.902 4 C -0.123 4.123 5 C 0.088 3.912 6 H 0.063 0.937 7 N -0.680 5.680 8 C 0.067 3.933 9 C 0.438 3.562 10 O -0.624 6.624 11 N -0.573 5.573 12 C -0.334 4.334 13 H 0.078 0.922 14 C -0.013 4.013 15 N -0.920 5.920 16 Si 0.992 3.008 17 H -0.270 1.270 18 H -0.270 1.270 19 H -0.274 1.274 20 C -0.114 4.114 21 C 0.055 3.945 22 N -0.569 5.569 23 C 0.502 3.498 24 O -0.546 6.546 25 C 0.516 3.484 26 N -0.796 5.796 27 O -0.530 6.530 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.345 0.655 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.152 0.848 41 H 0.082 0.918 42 H 0.423 0.577 43 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.673 16.645 -19.941 25.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.035 3.965 3 H 0.116 0.884 4 C -0.162 4.162 5 C -0.021 4.021 6 H 0.081 0.919 7 N -0.312 5.312 8 C -0.066 4.066 9 C 0.225 3.775 10 O -0.511 6.511 11 N -0.211 5.211 12 C -0.463 4.463 13 H 0.096 0.904 14 C -0.213 4.213 15 N -0.561 5.561 16 Si 0.816 3.184 17 H -0.195 1.195 18 H -0.195 1.195 19 H -0.199 1.199 20 C -0.153 4.153 21 C -0.066 4.066 22 N -0.302 5.302 23 C 0.285 3.715 24 O -0.424 6.424 25 C 0.295 3.705 26 N -0.363 5.363 27 O -0.409 6.409 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.165 0.835 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.168 0.832 41 H 0.100 0.900 42 H 0.255 0.745 43 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 0.290 16.310 -19.646 25.536 hybrid contribution -0.638 -0.216 0.799 1.046 sum -0.349 16.095 -18.847 24.786 Atomic orbital electron populations 1.22124 0.92866 1.03187 1.03342 1.21361 0.95683 0.96826 0.82641 0.88361 1.22046 1.01803 0.94276 0.98057 1.21647 0.97963 0.92608 0.89880 0.91898 1.60079 1.55090 1.09063 1.07014 1.21570 0.95578 0.94052 0.95370 1.20904 0.85326 0.82846 0.88393 1.90490 1.31525 1.67588 1.61463 1.41936 1.30512 1.23488 1.25124 1.19653 1.15018 1.07668 1.03979 0.90429 1.26033 0.96049 0.97073 1.02119 1.69669 1.21867 1.23252 1.41311 0.84935 0.78394 0.77485 0.77573 1.19526 1.19512 1.19906 1.21819 1.00503 0.99980 0.93035 1.23242 1.03223 0.77697 1.02453 1.48210 1.51912 1.10743 1.19292 1.20194 0.79925 0.87190 0.84199 1.90741 1.60556 1.13988 1.77157 1.20069 0.79339 0.87112 0.83954 1.43437 1.57600 1.12981 1.22257 1.90413 1.58469 1.14375 1.77679 0.91545 0.89733 0.92086 0.89054 0.91961 0.83523 0.88051 0.91351 0.76939 0.91281 0.92880 0.90635 0.83159 0.90017 0.74492 0.74115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.03 71.98 0.65 -1.62 16 2 C 0.14 2.50 3.19 44.98 0.14 2.65 16 3 H 0.10 1.91 7.05 -2.39 -0.02 1.89 16 4 C -0.12 -2.49 4.83 30.68 0.15 -2.34 16 5 C 0.09 2.03 2.25 44.94 0.10 2.13 16 6 H 0.06 1.28 6.15 -2.39 -0.01 1.27 16 7 N -0.68 -21.28 5.93 -495.44 -2.94 -24.22 16 8 C 0.07 2.26 5.96 85.56 0.51 2.77 16 9 C 0.44 20.94 7.82 87.66 0.69 21.63 16 10 O -0.62 -34.99 15.78 -3.06 -0.05 -35.03 16 11 N -0.57 -29.57 5.29 -306.98 -1.62 -31.20 16 12 C -0.33 -19.10 9.68 84.04 0.81 -18.28 16 13 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 14 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 15 N -0.92 -49.75 13.05 21.66 0.28 -49.47 16 16 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 17 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 C -0.11 -2.66 5.59 30.67 0.17 -2.49 16 21 C 0.05 1.06 5.85 86.36 0.51 1.57 16 22 N -0.57 -11.21 2.68 -796.57 -2.13 -13.34 16 23 C 0.50 10.26 7.74 87.27 0.68 10.94 16 24 O -0.55 -12.73 15.94 -3.26 -0.05 -12.79 16 25 C 0.52 8.98 8.05 87.27 0.70 9.68 16 26 N -0.80 -7.32 8.87 -174.50 -1.55 -8.87 16 27 O -0.53 -11.60 13.94 -3.24 -0.05 -11.64 16 28 H 0.07 0.95 5.73 -2.39 -0.01 0.94 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 1.62 8.10 -2.39 -0.02 1.60 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.35 11.26 8.03 -89.69 -0.72 10.54 16 34 H 0.10 3.16 7.41 -2.39 -0.02 3.14 16 35 H 0.07 2.00 8.05 -2.39 -0.02 1.98 16 36 H 0.40 19.34 7.90 -92.70 -0.73 18.61 16 37 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.78 7.43 -2.39 -0.02 1.76 16 40 H 0.15 3.20 3.78 -78.83 -0.30 2.91 16 41 H 0.08 1.33 7.51 -2.39 -0.02 1.31 16 42 H 0.42 2.73 8.32 -92.71 -0.77 1.96 16 43 H 0.42 2.06 8.93 -92.71 -0.83 1.23 16 Total: -1.00 -72.72 350.26 -2.74 -75.46 By element: Atomic # 1 Polarization: 41.73 SS G_CDS: -2.24 Total: 39.50 kcal Atomic # 6 Polarization: 20.82 SS G_CDS: 5.57 Total: 26.40 kcal Atomic # 7 Polarization: -119.13 SS G_CDS: -7.96 Total: -127.09 kcal Atomic # 8 Polarization: -59.32 SS G_CDS: -0.15 Total: -59.46 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -72.72 -2.74 -75.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754599414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.102 kcal (2) G-P(sol) polarization free energy of solvation -72.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds