Wall clock time and date at job start Fri Apr 10 2020 18:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.70497 * 2 1 4 4 C 1.53632 * 109.66303 * 120.59242 * 2 1 3 5 5 C 1.53039 * 109.24104 * 174.54723 * 4 2 1 6 6 H 1.08999 * 109.45739 * 58.52866 * 5 4 2 7 7 N 1.46901 * 109.44872 * 178.49655 * 5 4 2 8 8 C 1.46901 * 110.99979 * 205.06362 * 7 5 4 9 9 C 1.50704 * 109.47060 * 179.97438 * 8 7 5 10 10 O 1.21293 * 119.99585 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00042 * 179.97438 * 9 8 7 12 12 C 1.37099 * 120.00114 * 179.97438 * 11 9 8 13 13 H 1.08000 * 119.99519 * 0.02562 * 12 11 9 14 14 C 1.38949 * 119.99850 * 180.02562 * 12 11 9 15 15 N 1.31405 * 120.00400 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99665 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47178 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47240 * 119.99899 * 16 14 12 19 19 H 1.48502 * 109.47116 * 239.99871 * 16 14 12 20 20 C 1.53036 * 109.54054 * 298.51175 * 5 4 2 21 21 C 1.53191 * 109.31538 * 61.36184 * 20 5 4 22 22 N 1.46924 * 108.77848 * 305.37146 * 21 20 5 23 23 C 1.34780 * 120.63215 * 233.58321 * 22 21 20 24 24 O 1.21346 * 120.00006 * 185.37632 * 23 22 21 25 25 C 1.49446 * 119.99815 * 5.38521 * 23 22 21 26 26 N 1.34778 * 120.00141 * 174.02065 * 25 23 22 27 27 O 1.21355 * 120.00041 * 354.28844 * 25 23 22 28 28 H 1.08999 * 109.47072 * 174.64729 * 1 2 3 29 29 H 1.09000 * 109.46568 * 294.65022 * 1 2 3 30 30 H 1.08999 * 109.46540 * 54.64571 * 1 2 3 31 31 H 1.09000 * 109.63441 * 54.55555 * 4 2 1 32 32 H 1.09003 * 109.45372 * 294.42804 * 4 2 1 33 33 H 1.00899 * 110.99794 * 329.01306 * 7 5 4 34 34 H 1.08996 * 109.46804 * 299.99898 * 8 7 5 35 35 H 1.09001 * 109.47333 * 59.99728 * 8 7 5 36 36 H 0.97008 * 120.00096 * 0.02562 * 11 9 8 37 37 H 0.96997 * 120.00436 * 180.02562 * 15 14 12 38 38 H 1.09006 * 109.49411 * 301.41655 * 20 5 4 39 39 H 1.09001 * 109.50132 * 181.31812 * 20 5 4 40 40 H 1.08997 * 109.58970 * 185.57818 * 21 20 5 41 41 H 1.09006 * 109.70322 * 65.22277 * 21 20 5 42 42 H 0.96997 * 120.00044 * 180.26972 * 26 25 23 43 43 H 0.97002 * 119.99592 * 0.27201 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0470 -0.7363 1.2454 5 6 3.5712 -0.8499 1.1677 6 1 4.0065 0.1471 1.0990 7 7 4.0737 -1.5214 2.3737 8 6 5.4677 -1.1449 2.6437 9 6 5.9473 -1.8512 3.8856 10 8 5.2010 -2.5947 4.4868 11 7 7.2053 -1.6567 4.3282 12 6 7.6414 -2.2989 5.4582 13 1 6.9769 -2.9609 5.9935 14 6 8.9383 -2.0979 5.9148 15 7 9.7466 -1.2920 5.2637 16 14 9.5327 -2.9734 7.4541 17 1 8.4383 -3.8176 7.9973 18 1 10.6986 -3.8296 7.1177 19 1 9.9336 -1.9687 8.4715 20 6 3.9615 -1.6628 -0.0687 21 6 3.4657 -0.9421 -1.3263 22 7 2.0226 -0.6996 -1.1945 23 6 1.1674 -1.1062 -2.1536 24 8 -0.0084 -0.8151 -2.0812 25 6 1.6673 -1.9157 -3.3061 26 7 0.7966 -2.4242 -4.2004 27 8 2.8568 -2.1193 -3.4340 28 1 -0.3633 -1.0232 -0.0959 29 1 -0.3632 0.4286 0.9340 30 1 -0.3632 0.5947 -0.8382 31 1 1.6096 -1.7337 1.2891 32 1 1.7689 -0.1775 2.1390 33 1 3.4853 -1.3241 3.1692 34 1 6.0921 -1.4323 1.7978 35 1 5.5307 -0.0668 2.7921 36 1 7.8020 -1.0617 3.8476 37 1 10.6521 -1.1519 5.5822 38 1 3.5060 -2.6516 -0.0127 39 1 5.0461 -1.7632 -0.1107 40 1 3.6532 -1.5639 -2.2017 41 1 3.9875 0.0087 -1.4348 42 1 1.1207 -2.9529 -4.9462 43 1 -0.1542 -2.2614 -4.0982 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754599415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:47 Heat of formation + Delta-G solvation = -74.007866 kcal Electronic energy + Delta-G solvation = -26124.347511 eV Core-core repulsion = 22205.710925 eV Total energy + Delta-G solvation = -3918.636586 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.41658 -39.29866 -38.46962 -37.77030 -35.37981 -34.10772 -33.80849 -32.87066 -31.37167 -31.01176 -28.09225 -26.22939 -25.49534 -24.16739 -23.55776 -22.09351 -20.65724 -19.96555 -19.19188 -18.05675 -17.86702 -17.50532 -16.48700 -16.28812 -16.09594 -15.74210 -15.28707 -15.11068 -14.86423 -14.49316 -14.18218 -14.00580 -13.84290 -13.73299 -13.37158 -13.14409 -12.68824 -12.44521 -12.25849 -12.04301 -11.92160 -11.60022 -11.44363 -11.36415 -11.19464 -11.06004 -10.62194 -10.36877 -10.33618 -10.22531 -10.20533 -9.51087 -9.15185 -8.93195 -8.43238 -8.05574 -7.94811 -6.40855 -3.81574 1.06246 2.10458 2.86469 3.17046 3.27511 3.33111 3.34967 3.91967 4.05647 4.06599 4.27835 4.57003 4.73599 4.81180 5.04746 5.07747 5.11116 5.25991 5.31387 5.37519 5.43017 5.57376 5.62886 5.73622 5.79967 5.83062 5.87898 5.97506 6.03562 6.13296 6.24220 6.27202 6.36236 6.45355 6.52846 6.97469 7.25832 7.45859 7.56339 7.67554 7.68498 8.07760 8.62419 9.19062 9.55588 10.07073 10.77033 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.029682 B = 0.002402 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.099031 B =11654.567829 C =12147.748436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.141 3.859 3 H 0.078 0.922 4 C -0.131 4.131 5 C 0.085 3.915 6 H 0.043 0.957 7 N -0.664 5.664 8 C 0.051 3.949 9 C 0.441 3.559 10 O -0.583 6.583 11 N -0.565 5.565 12 C -0.298 4.298 13 H 0.103 0.897 14 C 0.021 3.979 15 N -0.902 5.902 16 Si 0.929 3.071 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.282 1.282 20 C -0.119 4.119 21 C 0.043 3.957 22 N -0.568 5.568 23 C 0.506 3.494 24 O -0.520 6.520 25 C 0.514 3.486 26 N -0.820 5.820 27 O -0.508 6.508 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.349 0.651 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.161 0.839 41 H 0.066 0.934 42 H 0.411 0.589 43 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.463 4.039 -18.841 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.039 3.961 3 H 0.096 0.904 4 C -0.170 4.170 5 C -0.025 4.025 6 H 0.061 0.939 7 N -0.297 5.297 8 C -0.082 4.082 9 C 0.227 3.773 10 O -0.467 6.467 11 N -0.201 5.201 12 C -0.428 4.428 13 H 0.121 0.879 14 C -0.180 4.180 15 N -0.544 5.544 16 Si 0.756 3.244 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.158 4.158 21 C -0.078 4.078 22 N -0.301 5.301 23 C 0.288 3.712 24 O -0.398 6.398 25 C 0.294 3.706 26 N -0.385 5.385 27 O -0.385 6.385 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.170 0.830 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.177 0.823 41 H 0.085 0.915 42 H 0.243 0.757 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -16.431 3.139 -18.568 24.992 hybrid contribution 0.573 0.796 0.668 1.187 sum -15.858 3.935 -17.900 24.235 Atomic orbital electron populations 1.22231 0.92255 1.03753 1.01514 1.21562 0.95989 0.95303 0.83285 0.90361 1.22269 0.95577 1.02082 0.97043 1.21559 0.93695 0.95553 0.91740 0.93898 1.60100 1.02409 1.61116 1.06040 1.21723 0.90778 0.97321 0.98360 1.19822 0.83526 0.86644 0.87338 1.90523 1.55487 1.40939 1.59779 1.41877 1.10861 1.41940 1.25455 1.19751 0.96880 1.23821 1.02309 0.87892 1.25262 0.95907 0.97329 0.99510 1.69615 1.07625 1.36805 1.40314 0.85804 0.78733 0.78977 0.80851 1.19222 1.20732 1.20788 1.21899 1.01874 0.99714 0.92306 1.23490 0.77597 1.03017 1.03721 1.48131 1.08518 1.54572 1.18917 1.19879 0.86183 0.81402 0.83773 1.90813 1.16499 1.56141 1.76309 1.20446 0.86254 0.79976 0.83889 1.43555 1.11712 1.54576 1.28673 1.90348 1.15506 1.59050 1.73624 0.91542 0.93128 0.90303 0.90259 0.90421 0.83048 0.89612 0.93934 0.77469 0.91934 0.90836 0.90346 0.82271 0.91528 0.75652 0.75514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 7.62 37.16 0.28 -1.07 16 2 C 0.14 1.39 3.51 -67.37 -0.24 1.15 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.13 -1.41 4.68 -26.38 -0.12 -1.53 16 5 C 0.08 1.05 2.45 -67.67 -0.17 0.88 16 6 H 0.04 0.51 7.80 -51.93 -0.40 0.11 16 7 N -0.66 -10.71 5.93 -107.95 -0.64 -11.35 16 8 C 0.05 0.90 5.97 -4.97 -0.03 0.87 16 9 C 0.44 10.50 7.82 -10.99 -0.09 10.42 16 10 O -0.58 -15.99 15.78 5.55 0.09 -15.91 16 11 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 12 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 13 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 14 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 15 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 16 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 C -0.12 -1.43 5.59 -26.61 -0.15 -1.58 16 21 C 0.04 0.44 6.28 -3.71 -0.02 0.42 16 22 N -0.57 -5.88 2.97 -165.46 -0.49 -6.37 16 23 C 0.51 5.19 7.58 -11.59 -0.09 5.10 16 24 O -0.52 -5.73 12.04 5.50 0.07 -5.67 16 25 C 0.51 4.64 8.09 -11.59 -0.09 4.55 16 26 N -0.82 -4.29 8.87 30.90 0.27 -4.02 16 27 O -0.51 -5.66 13.85 5.49 0.08 -5.59 16 28 H 0.07 0.72 6.95 -51.93 -0.36 0.36 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.82 6.55 -51.93 -0.34 0.48 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.35 5.81 8.03 -39.29 -0.32 5.49 16 34 H 0.09 1.41 7.41 -51.93 -0.39 1.03 16 35 H 0.04 0.68 8.05 -51.93 -0.42 0.26 16 36 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 0.97 7.43 -51.93 -0.39 0.58 16 40 H 0.16 1.78 3.69 -57.23 -0.21 1.57 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.41 1.35 8.93 -40.82 -0.36 0.99 16 43 H 0.41 1.61 8.32 -40.82 -0.34 1.27 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -33.11 348.72 -6.57 -39.68 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -5.89 Total: 15.10 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: -0.95 Total: 11.16 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: -0.19 Total: -60.19 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: 0.23 Total: -27.16 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.11 -6.57 -39.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754599415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.328 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds