Wall clock time and date at job start Fri Apr 10 2020 18:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.70497 * 2 1 4 4 C 1.53632 * 109.66303 * 120.59242 * 2 1 3 5 5 C 1.53039 * 109.24104 * 174.54723 * 4 2 1 6 6 H 1.08999 * 109.45739 * 58.52866 * 5 4 2 7 7 N 1.46901 * 109.44872 * 178.49655 * 5 4 2 8 8 C 1.46901 * 110.99979 * 205.06362 * 7 5 4 9 9 C 1.50704 * 109.47060 * 179.97438 * 8 7 5 10 10 O 1.21293 * 119.99585 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00042 * 179.97438 * 9 8 7 12 12 C 1.37099 * 120.00114 * 179.97438 * 11 9 8 13 13 H 1.08000 * 119.99519 * 0.02562 * 12 11 9 14 14 C 1.38949 * 119.99850 * 180.02562 * 12 11 9 15 15 N 1.31405 * 120.00400 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99665 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47178 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47240 * 119.99899 * 16 14 12 19 19 H 1.48502 * 109.47116 * 239.99871 * 16 14 12 20 20 C 1.53036 * 109.54054 * 298.51175 * 5 4 2 21 21 C 1.53191 * 109.31538 * 61.36184 * 20 5 4 22 22 N 1.46924 * 108.77848 * 305.37146 * 21 20 5 23 23 C 1.34780 * 120.63215 * 233.58321 * 22 21 20 24 24 O 1.21346 * 120.00006 * 185.37632 * 23 22 21 25 25 C 1.49446 * 119.99815 * 5.38521 * 23 22 21 26 26 N 1.34778 * 120.00141 * 174.02065 * 25 23 22 27 27 O 1.21355 * 120.00041 * 354.28844 * 25 23 22 28 28 H 1.08999 * 109.47072 * 174.64729 * 1 2 3 29 29 H 1.09000 * 109.46568 * 294.65022 * 1 2 3 30 30 H 1.08999 * 109.46540 * 54.64571 * 1 2 3 31 31 H 1.09000 * 109.63441 * 54.55555 * 4 2 1 32 32 H 1.09003 * 109.45372 * 294.42804 * 4 2 1 33 33 H 1.00899 * 110.99794 * 329.01306 * 7 5 4 34 34 H 1.08996 * 109.46804 * 299.99898 * 8 7 5 35 35 H 1.09001 * 109.47333 * 59.99728 * 8 7 5 36 36 H 0.97008 * 120.00096 * 0.02562 * 11 9 8 37 37 H 0.96997 * 120.00436 * 180.02562 * 15 14 12 38 38 H 1.09006 * 109.49411 * 301.41655 * 20 5 4 39 39 H 1.09001 * 109.50132 * 181.31812 * 20 5 4 40 40 H 1.08997 * 109.58970 * 185.57818 * 21 20 5 41 41 H 1.09006 * 109.70322 * 65.22277 * 21 20 5 42 42 H 0.96997 * 120.00044 * 180.26972 * 26 25 23 43 43 H 0.97002 * 119.99592 * 0.27201 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0470 -0.7363 1.2454 5 6 3.5712 -0.8499 1.1677 6 1 4.0065 0.1471 1.0990 7 7 4.0737 -1.5214 2.3737 8 6 5.4677 -1.1449 2.6437 9 6 5.9473 -1.8512 3.8856 10 8 5.2010 -2.5947 4.4868 11 7 7.2053 -1.6567 4.3282 12 6 7.6414 -2.2989 5.4582 13 1 6.9769 -2.9609 5.9935 14 6 8.9383 -2.0979 5.9148 15 7 9.7466 -1.2920 5.2637 16 14 9.5327 -2.9734 7.4541 17 1 8.4383 -3.8176 7.9973 18 1 10.6986 -3.8296 7.1177 19 1 9.9336 -1.9687 8.4715 20 6 3.9615 -1.6628 -0.0687 21 6 3.4657 -0.9421 -1.3263 22 7 2.0226 -0.6996 -1.1945 23 6 1.1674 -1.1062 -2.1536 24 8 -0.0084 -0.8151 -2.0812 25 6 1.6673 -1.9157 -3.3061 26 7 0.7966 -2.4242 -4.2004 27 8 2.8568 -2.1193 -3.4340 28 1 -0.3633 -1.0232 -0.0959 29 1 -0.3632 0.4286 0.9340 30 1 -0.3632 0.5947 -0.8382 31 1 1.6096 -1.7337 1.2891 32 1 1.7689 -0.1775 2.1390 33 1 3.4853 -1.3241 3.1692 34 1 6.0921 -1.4323 1.7978 35 1 5.5307 -0.0668 2.7921 36 1 7.8020 -1.0617 3.8476 37 1 10.6521 -1.1519 5.5822 38 1 3.5060 -2.6516 -0.0127 39 1 5.0461 -1.7632 -0.1107 40 1 3.6532 -1.5639 -2.2017 41 1 3.9875 0.0087 -1.4348 42 1 1.1207 -2.9529 -4.9462 43 1 -0.1542 -2.2614 -4.0982 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754599415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:46 Heat of formation + Delta-G solvation = -102.616834 kcal Electronic energy + Delta-G solvation = -26125.588089 eV Core-core repulsion = 22205.710925 eV Total energy + Delta-G solvation = -3919.877164 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.19374 -40.31761 -39.89290 -38.89980 -36.53729 -35.83301 -34.70814 -33.68784 -33.28931 -32.26434 -29.14855 -27.70541 -26.36157 -25.70948 -24.57331 -22.92643 -21.57154 -21.13448 -20.66720 -19.89965 -18.75322 -18.20476 -17.86901 -17.22389 -16.95069 -16.91183 -16.47911 -16.39181 -16.18753 -15.70947 -15.53321 -15.35788 -14.96917 -14.85802 -14.58078 -14.15961 -13.93076 -13.52796 -13.48763 -13.39251 -13.18452 -12.91261 -12.87617 -12.62039 -12.40683 -12.28089 -12.11576 -12.05249 -11.60478 -11.51304 -11.09870 -10.91176 -10.34966 -10.01814 -9.93836 -9.73591 -9.32506 -8.47046 -5.95748 0.32399 1.36443 1.39855 1.41758 1.55994 2.04871 2.11885 2.28936 2.62676 2.88255 3.20273 3.44298 3.47291 3.69243 3.86032 3.98032 4.15756 4.26133 4.30419 4.42610 4.43375 4.50828 4.53379 4.59807 4.75692 4.84554 4.93316 4.99216 5.02382 5.18380 5.24005 5.34976 5.41116 5.52380 5.82732 5.91199 5.95026 6.12474 6.20360 6.41708 6.59928 6.75585 7.04168 7.12500 7.56047 8.11393 8.70630 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.029682 B = 0.002402 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.099031 B =11654.567829 C =12147.748436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.142 3.858 3 H 0.094 0.906 4 C -0.124 4.124 5 C 0.087 3.913 6 H 0.059 0.941 7 N -0.679 5.679 8 C 0.066 3.934 9 C 0.438 3.562 10 O -0.624 6.624 11 N -0.573 5.573 12 C -0.333 4.333 13 H 0.078 0.922 14 C -0.013 4.013 15 N -0.920 5.920 16 Si 0.993 3.007 17 H -0.274 1.274 18 H -0.271 1.271 19 H -0.270 1.270 20 C -0.115 4.115 21 C 0.051 3.949 22 N -0.572 5.572 23 C 0.502 3.498 24 O -0.530 6.530 25 C 0.512 3.488 26 N -0.797 5.797 27 O -0.533 6.533 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.345 0.655 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.158 0.842 41 H 0.080 0.920 42 H 0.423 0.577 43 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.577 4.929 -19.635 26.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.040 3.960 3 H 0.112 0.888 4 C -0.163 4.163 5 C -0.022 4.022 6 H 0.076 0.924 7 N -0.312 5.312 8 C -0.066 4.066 9 C 0.225 3.775 10 O -0.511 6.511 11 N -0.211 5.211 12 C -0.462 4.462 13 H 0.096 0.904 14 C -0.213 4.213 15 N -0.561 5.561 16 Si 0.816 3.184 17 H -0.199 1.199 18 H -0.196 1.196 19 H -0.195 1.195 20 C -0.154 4.154 21 C -0.070 4.070 22 N -0.305 5.305 23 C 0.284 3.716 24 O -0.408 6.408 25 C 0.292 3.708 26 N -0.363 5.363 27 O -0.412 6.412 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.165 0.835 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.174 0.826 41 H 0.099 0.901 42 H 0.258 0.742 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -16.569 4.040 -19.413 25.840 hybrid contribution 0.525 0.502 0.859 1.125 sum -16.043 4.542 -18.554 24.945 Atomic orbital electron populations 1.22116 0.92080 1.02726 1.01954 1.21613 0.96046 0.95790 0.82580 0.88811 1.22198 0.94271 1.01609 0.98176 1.21633 0.94702 0.95866 0.90000 0.92350 1.60098 1.01585 1.62421 1.07064 1.21575 0.91838 0.97779 0.95414 1.20896 0.82468 0.85722 0.88374 1.90491 1.56381 1.42687 1.61497 1.41943 1.11722 1.42190 1.25215 1.19689 0.97504 1.25130 1.03912 0.90423 1.26039 0.95441 0.97671 1.02154 1.69670 1.08015 1.37090 1.41347 0.84875 0.78041 0.78067 0.77371 1.19858 1.19601 1.19505 1.21851 1.01554 0.98966 0.93061 1.23401 0.77725 1.03423 1.02485 1.48196 1.08522 1.54640 1.19163 1.20122 0.86056 0.81303 0.84117 1.90811 1.16803 1.56494 1.76703 1.20294 0.86247 0.80169 0.84090 1.43432 1.11787 1.53216 1.27879 1.90340 1.16402 1.60250 1.74233 0.93068 0.91803 0.90884 0.91826 0.89293 0.83537 0.88011 0.91427 0.76943 0.91277 0.92766 0.90650 0.82643 0.90135 0.74238 0.74476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 7.62 71.98 0.55 -1.81 16 2 C 0.14 2.54 3.51 45.12 0.16 2.70 16 3 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 4 C -0.12 -2.49 4.68 30.82 0.14 -2.35 16 5 C 0.09 2.02 2.45 44.94 0.11 2.13 16 6 H 0.06 1.22 7.80 -2.39 -0.02 1.20 16 7 N -0.68 -21.33 5.93 -495.44 -2.94 -24.27 16 8 C 0.07 2.27 5.97 85.56 0.51 2.78 16 9 C 0.44 21.00 7.82 87.66 0.69 21.68 16 10 O -0.62 -35.01 15.78 -3.07 -0.05 -35.06 16 11 N -0.57 -29.64 5.29 -306.99 -1.62 -31.26 16 12 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 13 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 14 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 15 N -0.92 -49.82 13.05 21.66 0.28 -49.54 16 16 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 19 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 20 C -0.12 -2.66 5.59 30.67 0.17 -2.49 16 21 C 0.05 0.98 6.28 86.36 0.54 1.53 16 22 N -0.57 -11.08 2.97 -795.77 -2.36 -13.44 16 23 C 0.50 9.75 7.58 87.27 0.66 10.41 16 24 O -0.53 -11.10 12.04 -3.23 -0.04 -11.14 16 25 C 0.51 8.68 8.09 87.27 0.71 9.39 16 26 N -0.80 -7.11 8.87 -174.50 -1.55 -8.66 16 27 O -0.53 -11.43 13.85 -3.26 -0.05 -11.47 16 28 H 0.05 1.07 6.95 -2.39 -0.02 1.06 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.41 6.55 -2.39 -0.02 1.40 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.59 8.10 -2.39 -0.02 1.58 16 33 H 0.35 11.31 8.03 -89.69 -0.72 10.59 16 34 H 0.10 3.19 7.41 -2.39 -0.02 3.17 16 35 H 0.07 2.00 8.05 -2.39 -0.02 1.99 16 36 H 0.40 19.40 7.90 -92.70 -0.73 18.67 16 37 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 38 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.07 1.77 7.43 -2.39 -0.02 1.75 16 40 H 0.16 3.34 3.69 -86.24 -0.32 3.02 16 41 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.42 2.04 8.93 -92.71 -0.83 1.21 16 43 H 0.42 2.56 8.32 -92.71 -0.77 1.79 16 Total: -1.00 -71.55 348.72 -3.04 -74.58 By element: Atomic # 1 Polarization: 41.84 SS G_CDS: -2.26 Total: 39.58 kcal Atomic # 6 Polarization: 19.94 SS G_CDS: 5.52 Total: 25.46 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -8.19 Total: -127.17 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: -0.13 Total: -57.67 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -71.55 -3.04 -74.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754599415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.033 kcal (2) G-P(sol) polarization free energy of solvation -71.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds