Wall clock time and date at job start Fri Apr 10 2020 18:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00436 * 4 2 1 6 6 O 1.21279 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99762 * 179.97438 * 5 4 2 8 8 C 1.50699 * 109.46817 * 179.97438 * 7 5 4 9 9 N 1.34779 * 120.00033 * 180.02562 * 8 7 5 10 10 O 1.21282 * 120.00041 * 0.02562 * 8 7 5 11 11 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 12 12 C 1.53938 * 113.73342 * 156.72577 * 11 2 1 13 13 N 1.47956 * 86.18067 * 221.92128 * 12 11 2 14 14 C 1.46904 * 111.00244 * 137.58307 * 13 12 11 15 15 C 1.50703 * 109.46952 * 90.64067 * 14 13 12 16 16 O 1.21295 * 119.99570 * 0.02562 * 15 14 13 17 17 N 1.34771 * 120.00187 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00217 * 179.97438 * 17 15 14 19 19 H 1.07994 * 119.99856 * 0.02562 * 18 17 15 20 20 C 1.38954 * 119.99777 * 179.97438 * 18 17 15 21 21 N 1.31410 * 119.99668 * 180.02562 * 20 18 17 22 22 Si 1.86790 * 120.00122 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47437 * 89.99835 * 22 20 18 24 24 H 1.48501 * 109.47142 * 210.00104 * 22 20 18 25 25 H 1.48505 * 109.47326 * 329.99802 * 22 20 18 26 26 C 1.47960 * 90.76413 * 24.68994 * 13 12 11 27 27 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 28 28 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 29 29 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 30 30 H 0.96999 * 119.99694 * 94.99826 * 4 2 1 31 31 H 1.09000 * 109.47318 * 299.99141 * 7 5 4 32 32 H 1.09000 * 109.47161 * 59.99772 * 7 5 4 33 33 H 0.96996 * 119.99850 * 359.97438 * 9 8 7 34 34 H 0.96997 * 119.99862 * 180.02562 * 9 8 7 35 35 H 1.08994 * 112.93668 * 288.43332 * 11 2 1 36 36 H 1.08995 * 113.75984 * 336.23858 * 12 11 2 37 37 H 1.09000 * 113.75564 * 107.60826 * 12 11 2 38 38 H 1.08996 * 109.47316 * 210.63995 * 14 13 12 39 39 H 1.08998 * 109.46789 * 330.64507 * 14 13 12 40 40 H 0.97003 * 119.99634 * 359.97438 * 17 15 14 41 41 H 0.96997 * 120.00022 * 180.02562 * 21 20 18 42 42 H 1.09006 * 113.76345 * 220.99238 * 26 13 12 43 43 H 1.09004 * 113.76072 * 89.62817 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7287 3.5878 8 6 2.7002 0.2399 4.7412 9 7 3.1218 -0.1758 5.9519 10 8 2.3621 1.3934 4.5799 11 6 2.0400 -0.7213 -1.2492 12 6 3.4670 -0.3154 -1.6598 13 7 2.9605 -0.3147 -3.0499 14 6 3.4682 0.8453 -3.7947 15 6 4.7627 0.4789 -4.4739 16 8 5.2172 -0.6389 -4.3500 17 7 5.4152 1.3930 -5.2188 18 6 6.5931 1.0598 -5.8362 19 1 6.9978 0.0646 -5.7260 20 6 7.2655 2.0022 -6.6047 21 7 8.3942 1.6826 -7.1969 22 14 6.5650 3.7232 -6.7959 23 1 7.0908 4.5947 -5.7146 24 1 6.9637 4.2761 -8.1152 25 1 5.0835 3.6671 -6.7100 26 6 1.5823 -0.0739 -2.5687 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 2.2490 -1.6316 1.1527 31 1 1.9759 -1.5504 3.8327 32 1 3.6480 -1.1212 3.3986 33 1 3.3918 -1.0984 6.0810 34 1 3.1545 0.4476 6.6944 35 1 1.8824 -1.7991 -1.2115 36 1 3.7640 0.6698 -1.3001 37 1 4.2152 -1.0838 -1.4654 38 1 2.7362 1.1442 -4.5449 39 1 3.6408 1.6722 -3.1058 40 1 5.0514 2.2867 -5.3181 41 1 8.8638 2.3405 -7.7330 42 1 0.8245 -0.6494 -3.1005 43 1 1.3280 0.9819 -2.4748 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755384956.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:00 Heat of formation + Delta-G solvation = -66.344416 kcal Electronic energy + Delta-G solvation = -25492.133726 eV Core-core repulsion = 21573.829452 eV Total energy + Delta-G solvation = -3918.304274 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.74799 -40.06772 -38.73174 -37.88413 -35.37160 -34.01234 -33.89137 -32.12341 -31.62619 -30.30093 -29.28018 -26.33327 -25.62824 -24.10264 -22.57814 -21.21239 -20.60278 -19.63055 -19.30646 -18.33602 -17.83005 -17.58082 -16.65413 -16.22320 -16.14900 -16.00440 -15.24655 -15.03231 -14.90818 -14.62263 -14.31151 -13.95253 -13.67105 -13.55117 -13.24159 -13.08570 -12.82766 -12.62758 -12.52106 -12.28151 -12.17310 -11.88431 -11.50211 -11.17012 -10.97652 -10.74999 -10.68644 -10.56927 -10.46632 -10.01811 -9.94659 -9.68300 -9.52896 -9.29282 -8.77750 -8.26106 -8.14093 -6.28029 -3.79135 2.28434 2.51143 2.63173 3.05224 3.09405 3.17327 3.33353 3.77905 3.86949 4.13117 4.17047 4.32348 4.51502 4.58159 4.72134 4.76063 4.85692 5.00135 5.14044 5.18653 5.19024 5.34423 5.38114 5.50011 5.58232 5.58884 5.66191 5.74725 5.88448 5.97340 5.99859 6.12883 6.33089 6.41157 6.51064 6.91477 7.09170 7.27015 7.61734 7.92133 8.10436 8.17719 8.64197 8.98921 9.46224 9.88362 10.85299 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.017814 B = 0.002469 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.433150 B =11339.553043 C =11972.366596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.152 3.848 3 H 0.088 0.912 4 N -0.726 5.726 5 C 0.511 3.489 6 O -0.496 6.496 7 C -0.168 4.168 8 C 0.514 3.486 9 N -0.861 5.861 10 O -0.497 6.497 11 C -0.124 4.124 12 C 0.017 3.983 13 N -0.449 5.449 14 C 0.006 3.994 15 C 0.456 3.544 16 O -0.558 6.558 17 N -0.595 5.595 18 C -0.303 4.303 19 H 0.119 0.881 20 C 0.040 3.960 21 N -0.883 5.883 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.010 3.990 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.399 0.601 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.399 0.601 34 H 0.403 0.597 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.092 0.908 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.001 -6.161 22.843 28.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 H 0.106 0.894 4 N -0.380 5.380 5 C 0.295 3.705 6 O -0.368 6.368 7 C -0.211 4.211 8 C 0.297 3.703 9 N -0.427 5.427 10 O -0.368 6.368 11 C -0.144 4.144 12 C -0.112 4.112 13 N -0.171 5.171 14 C -0.126 4.126 15 C 0.241 3.759 16 O -0.439 6.439 17 N -0.235 5.235 18 C -0.432 4.432 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.523 5.523 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.120 4.120 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.233 0.767 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.227 0.773 34 H 0.234 0.766 35 H 0.123 0.877 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.202 0.798 41 H 0.083 0.917 42 H 0.110 0.890 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.832 -5.776 22.052 27.755 hybrid contribution -0.144 1.399 0.462 1.480 sum -15.975 -4.377 22.514 27.951 Atomic orbital electron populations 1.22141 0.95025 1.02179 1.02629 1.21023 0.94130 0.97236 0.82917 0.89378 1.46027 1.68406 1.14029 1.09490 1.19931 0.78903 0.87597 0.84081 1.90874 1.47039 1.14992 1.83914 1.21606 1.05749 1.00017 0.93768 1.20009 0.77534 0.88927 0.83872 1.43869 1.70965 1.15807 1.12063 1.90928 1.44865 1.18340 1.82682 1.23310 0.96877 1.01205 0.92963 1.24011 0.96349 1.01651 0.89219 1.68377 1.02031 1.35772 1.10945 1.22526 0.97882 0.93054 0.99128 1.19595 0.86343 0.86190 0.83739 1.90554 1.68270 1.21039 1.64005 1.42233 1.22828 1.12196 1.46219 1.19419 0.96539 1.01498 1.25723 0.86340 1.25031 0.95977 0.98362 0.96874 1.69620 1.15379 1.35190 1.32157 0.86674 0.79108 0.84759 0.78862 1.19668 1.20187 1.19513 1.23972 0.94092 0.99992 0.93942 0.92172 0.91381 0.92352 0.76651 0.86054 0.85860 0.77277 0.76641 0.87708 0.91357 0.88999 0.89289 0.92306 0.79786 0.91669 0.89002 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.29 37.16 0.35 -1.00 16 2 C 0.15 1.40 2.41 -67.93 -0.16 1.24 16 3 H 0.09 1.04 7.37 -51.93 -0.38 0.66 16 4 N -0.73 -5.63 5.08 -53.81 -0.27 -5.90 16 5 C 0.51 5.16 7.79 -10.98 -0.09 5.07 16 6 O -0.50 -7.77 13.84 -18.96 -0.26 -8.03 16 7 C -0.17 -0.94 6.19 -29.03 -0.18 -1.12 16 8 C 0.51 4.53 8.09 -10.99 -0.09 4.44 16 9 N -0.86 -3.65 8.87 31.22 0.28 -3.37 16 10 O -0.50 -7.48 15.02 -18.96 -0.28 -7.76 16 11 C -0.12 -1.20 3.49 -89.69 -0.31 -1.51 16 12 C 0.02 0.22 7.51 -2.77 -0.02 0.20 16 13 N -0.45 -7.02 5.65 -239.73 -1.35 -8.37 16 14 C 0.01 0.11 5.28 -4.97 -0.03 0.08 16 15 C 0.46 10.66 7.83 -10.99 -0.09 10.57 16 16 O -0.56 -15.39 16.01 5.54 0.09 -15.30 16 17 N -0.59 -14.54 5.09 -10.96 -0.06 -14.60 16 18 C -0.30 -8.74 10.16 -14.93 -0.15 -8.89 16 19 H 0.12 3.89 7.39 -52.49 -0.39 3.51 16 20 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -26.17 13.96 55.50 0.77 -25.39 16 22 Si 0.88 19.78 27.74 -169.99 -4.71 15.07 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 26 C 0.01 0.10 6.57 -2.77 -0.02 0.09 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.52 7.43 -51.93 -0.39 0.14 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.40 1.89 8.60 -40.82 -0.35 1.54 16 31 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.40 0.25 8.83 -40.82 -0.36 -0.11 16 34 H 0.40 1.59 8.93 -40.82 -0.36 1.23 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.93 7.29 -51.93 -0.38 0.55 16 37 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 39 H 0.06 0.89 7.38 -51.93 -0.38 0.50 16 40 H 0.37 7.95 5.76 -40.82 -0.24 7.72 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.70 7.85 -51.93 -0.41 0.29 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -41.32 362.30 -7.41 -48.74 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -6.18 Total: 9.27 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -0.89 Total: 10.20 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.63 Total: -57.64 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.46 Total: -31.10 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.71 Total: 15.07 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -41.32 -7.41 -48.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755384956.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.606 kcal (2) G-P(sol) polarization free energy of solvation -41.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds