Wall clock time and date at job start Fri Apr 10 2020 18:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00436 * 4 2 1 6 6 O 1.21279 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99762 * 179.97438 * 5 4 2 8 8 C 1.50699 * 109.46817 * 179.97438 * 7 5 4 9 9 N 1.34779 * 120.00033 * 180.02562 * 8 7 5 10 10 O 1.21282 * 120.00041 * 0.02562 * 8 7 5 11 11 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 12 12 C 1.53938 * 113.73342 * 156.72577 * 11 2 1 13 13 N 1.47956 * 86.18067 * 221.92128 * 12 11 2 14 14 C 1.46904 * 111.00244 * 137.58307 * 13 12 11 15 15 C 1.50703 * 109.46952 * 90.64067 * 14 13 12 16 16 O 1.21295 * 119.99570 * 0.02562 * 15 14 13 17 17 N 1.34771 * 120.00187 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00217 * 179.97438 * 17 15 14 19 19 H 1.07994 * 119.99856 * 0.02562 * 18 17 15 20 20 C 1.38954 * 119.99777 * 179.97438 * 18 17 15 21 21 N 1.31410 * 119.99668 * 180.02562 * 20 18 17 22 22 Si 1.86790 * 120.00122 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47437 * 89.99835 * 22 20 18 24 24 H 1.48501 * 109.47142 * 210.00104 * 22 20 18 25 25 H 1.48505 * 109.47326 * 329.99802 * 22 20 18 26 26 C 1.47960 * 90.76413 * 24.68994 * 13 12 11 27 27 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 28 28 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 29 29 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 30 30 H 0.96999 * 119.99694 * 94.99826 * 4 2 1 31 31 H 1.09000 * 109.47318 * 299.99141 * 7 5 4 32 32 H 1.09000 * 109.47161 * 59.99772 * 7 5 4 33 33 H 0.96996 * 119.99850 * 359.97438 * 9 8 7 34 34 H 0.96997 * 119.99862 * 180.02562 * 9 8 7 35 35 H 1.08994 * 112.93668 * 288.43332 * 11 2 1 36 36 H 1.08995 * 113.75984 * 336.23858 * 12 11 2 37 37 H 1.09000 * 113.75564 * 107.60826 * 12 11 2 38 38 H 1.08996 * 109.47316 * 210.63995 * 14 13 12 39 39 H 1.08998 * 109.46789 * 330.64507 * 14 13 12 40 40 H 0.97003 * 119.99634 * 359.97438 * 17 15 14 41 41 H 0.96997 * 120.00022 * 180.02562 * 21 20 18 42 42 H 1.09006 * 113.76345 * 220.99238 * 26 13 12 43 43 H 1.09004 * 113.76072 * 89.62817 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7287 3.5878 8 6 2.7002 0.2399 4.7412 9 7 3.1218 -0.1758 5.9519 10 8 2.3621 1.3934 4.5799 11 6 2.0400 -0.7213 -1.2492 12 6 3.4670 -0.3154 -1.6598 13 7 2.9605 -0.3147 -3.0499 14 6 3.4682 0.8453 -3.7947 15 6 4.7627 0.4789 -4.4739 16 8 5.2172 -0.6389 -4.3500 17 7 5.4152 1.3930 -5.2188 18 6 6.5931 1.0598 -5.8362 19 1 6.9978 0.0646 -5.7260 20 6 7.2655 2.0022 -6.6047 21 7 8.3942 1.6826 -7.1969 22 14 6.5650 3.7232 -6.7959 23 1 7.0908 4.5947 -5.7146 24 1 6.9637 4.2761 -8.1152 25 1 5.0835 3.6671 -6.7100 26 6 1.5823 -0.0739 -2.5687 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 2.2490 -1.6316 1.1527 31 1 1.9759 -1.5504 3.8327 32 1 3.6480 -1.1212 3.3986 33 1 3.3918 -1.0984 6.0810 34 1 3.1545 0.4476 6.6944 35 1 1.8824 -1.7991 -1.2115 36 1 3.7640 0.6698 -1.3001 37 1 4.2152 -1.0838 -1.4654 38 1 2.7362 1.1442 -4.5449 39 1 3.6408 1.6722 -3.1058 40 1 5.0514 2.2867 -5.3181 41 1 8.8638 2.3405 -7.7330 42 1 0.8245 -0.6494 -3.1005 43 1 1.3280 0.9819 -2.4748 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755384956.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:00 Heat of formation + Delta-G solvation = -105.114698 kcal Electronic energy + Delta-G solvation = -25493.814931 eV Core-core repulsion = 21573.829452 eV Total energy + Delta-G solvation = -3919.985479 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.62196 -40.98796 -39.89470 -39.30184 -36.28901 -35.91670 -34.61617 -33.77289 -32.90502 -31.24105 -30.09542 -27.62451 -26.87833 -25.49820 -23.55275 -22.00918 -21.32921 -21.23800 -20.46610 -20.18818 -18.48958 -18.19287 -17.79330 -17.40811 -16.92634 -16.79921 -16.76778 -16.40813 -16.14520 -15.70619 -15.28501 -15.14179 -14.86275 -14.60820 -14.43448 -14.31824 -14.19227 -13.90283 -13.67916 -13.42256 -13.04224 -12.86391 -12.68374 -12.65695 -12.43189 -12.00181 -11.80533 -11.77505 -11.61494 -11.51779 -11.20023 -10.56345 -10.49412 -10.46018 -10.25623 -10.05790 -9.60137 -8.42643 -6.03169 1.28433 1.33625 1.42371 1.68365 1.80107 1.95320 2.04005 2.21239 2.64126 2.82223 3.13010 3.20523 3.42256 3.64673 3.72356 4.06174 4.16098 4.22137 4.23547 4.33435 4.39369 4.42077 4.48060 4.49695 4.52099 4.55773 4.78858 4.84881 4.87068 5.04018 5.24076 5.35181 5.43886 5.52638 5.62774 5.90513 5.97157 6.03859 6.54263 6.58881 6.67578 6.87396 7.37764 7.38983 7.51533 7.96711 8.75125 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.017814 B = 0.002469 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.433150 B =11339.553043 C =11972.366596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.156 3.844 3 H 0.060 0.940 4 N -0.713 5.713 5 C 0.502 3.498 6 O -0.559 6.559 7 C -0.157 4.157 8 C 0.505 3.495 9 N -0.838 5.838 10 O -0.571 6.571 11 C -0.096 4.096 12 C 0.008 3.992 13 N -0.485 5.485 14 C 0.018 3.982 15 C 0.453 3.547 16 O -0.608 6.608 17 N -0.595 5.595 18 C -0.327 4.327 19 H 0.055 0.945 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.232 1.232 26 C 0.016 3.984 27 H 0.039 0.961 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.417 0.583 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.420 0.580 34 H 0.405 0.595 35 H 0.123 0.877 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.083 0.917 40 H 0.388 0.612 41 H 0.279 0.721 42 H 0.109 0.891 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.541 -5.991 23.857 30.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.051 3.949 3 H 0.079 0.921 4 N -0.367 5.367 5 C 0.288 3.712 6 O -0.436 6.436 7 C -0.199 4.199 8 C 0.289 3.711 9 N -0.404 5.404 10 O -0.448 6.448 11 C -0.115 4.115 12 C -0.121 4.121 13 N -0.207 5.207 14 C -0.113 4.113 15 C 0.240 3.760 16 O -0.492 6.492 17 N -0.238 5.238 18 C -0.457 4.457 19 H 0.073 0.927 20 C -0.214 4.214 21 N -0.575 5.575 22 Si 0.784 3.216 23 H -0.183 1.183 24 H -0.198 1.198 25 H -0.156 1.156 26 C -0.113 4.113 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.255 0.745 31 H 0.183 0.817 32 H 0.176 0.824 33 H 0.252 0.748 34 H 0.236 0.764 35 H 0.141 0.859 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.136 0.864 39 H 0.101 0.899 40 H 0.224 0.776 41 H 0.089 0.911 42 H 0.127 0.873 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.373 -5.709 23.107 30.068 hybrid contribution 0.728 1.153 0.205 1.379 sum -17.645 -4.556 23.312 29.590 Atomic orbital electron populations 1.22073 0.93848 1.03229 1.02099 1.20853 0.94877 0.95924 0.83273 0.92146 1.45923 1.67425 1.14756 1.08587 1.20726 0.77851 0.87082 0.85513 1.90859 1.49868 1.17870 1.84971 1.21673 1.08467 0.99556 0.90244 1.20629 0.76501 0.88457 0.85466 1.43704 1.68896 1.16979 1.10808 1.90907 1.48483 1.21438 1.83995 1.23121 0.93624 1.02088 0.92675 1.24027 0.98189 1.01015 0.88859 1.68338 1.04835 1.35669 1.11904 1.22459 0.94514 0.94350 1.00014 1.20913 0.87719 0.85094 0.82233 1.90525 1.70023 1.23336 1.65306 1.42088 1.21774 1.13425 1.46467 1.18999 0.98995 0.99635 1.28031 0.92679 1.26100 0.95912 1.03979 0.95415 1.69798 1.17217 1.37544 1.32938 0.85378 0.80376 0.76804 0.79064 1.18343 1.19804 1.15565 1.24095 0.91847 1.01417 0.93921 0.94188 0.90484 0.90424 0.74533 0.81654 0.82428 0.74816 0.76405 0.85898 0.91839 0.90910 0.86427 0.89893 0.77627 0.91138 0.87287 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.29 71.98 0.67 -1.55 16 2 C 0.16 2.61 2.41 44.99 0.11 2.72 16 3 H 0.06 1.40 7.37 -2.39 -0.02 1.38 16 4 N -0.71 -9.59 5.08 -442.54 -2.25 -11.84 16 5 C 0.50 9.60 7.79 87.66 0.68 10.28 16 6 O -0.56 -18.05 13.84 20.42 0.28 -17.77 16 7 C -0.16 -1.33 6.19 29.10 0.18 -1.15 16 8 C 0.51 8.39 8.09 87.66 0.71 9.10 16 9 N -0.84 -5.49 8.87 -173.53 -1.54 -7.03 16 10 O -0.57 -17.86 15.02 20.40 0.31 -17.56 16 11 C -0.10 -1.61 3.49 -10.15 -0.04 -1.65 16 12 C 0.01 0.21 7.51 86.41 0.65 0.86 16 13 N -0.48 -14.28 5.65 -912.38 -5.15 -19.44 16 14 C 0.02 0.59 5.28 85.56 0.45 1.04 16 15 C 0.45 21.26 7.83 87.66 0.69 21.95 16 16 O -0.61 -34.88 16.01 -3.08 -0.05 -34.93 16 17 N -0.60 -29.10 5.09 -306.99 -1.56 -30.66 16 18 C -0.33 -19.65 10.16 84.04 0.85 -18.80 16 19 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 20 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 21 N -0.93 -57.21 13.96 21.66 0.30 -56.91 16 22 Si 0.96 39.87 27.74 68.60 1.90 41.78 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.23 -8.15 6.52 99.48 0.65 -7.50 16 26 C 0.02 0.29 6.57 86.41 0.57 0.86 16 27 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 0.96 7.43 -2.39 -0.02 0.95 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.42 2.58 8.60 -92.71 -0.80 1.78 16 31 H 0.17 -0.08 8.14 -2.39 -0.02 -0.09 16 32 H 0.16 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.42 -0.80 8.83 -92.71 -0.82 -1.62 16 34 H 0.41 2.72 8.93 -92.71 -0.83 1.89 16 35 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.69 7.29 -2.39 -0.02 1.67 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.12 3.10 8.08 -2.39 -0.02 3.08 16 39 H 0.08 2.27 7.38 -2.39 -0.02 2.26 16 40 H 0.39 15.81 5.76 -92.71 -0.53 15.28 16 41 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 42 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 43 H 0.09 1.37 7.85 -2.39 -0.02 1.35 16 Total: -1.00 -100.93 362.30 -3.72 -104.65 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -1.95 Total: 26.43 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: 5.99 Total: 23.26 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -10.20 Total: -125.87 kcal Atomic # 8 Polarization: -70.79 SS G_CDS: 0.54 Total: -70.25 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 1.90 Total: 41.78 kcal Total: -100.93 -3.72 -104.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755384956.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.463 kcal (2) G-P(sol) polarization free energy of solvation -100.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds