Wall clock time and date at job start Fri Apr 10 2020 18:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47316 * 2 1 4 4 N 1.46497 * 109.47346 * 239.99484 * 2 1 3 5 5 C 1.34779 * 119.99814 * 85.00462 * 4 2 1 6 6 O 1.21277 * 119.99947 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99947 * 180.02562 * 5 4 2 8 8 C 1.50701 * 109.47094 * 179.97438 * 7 5 4 9 9 N 1.34772 * 119.99930 * 179.97438 * 8 7 5 10 10 O 1.21290 * 119.99852 * 359.97438 * 8 7 5 11 11 C 1.53000 * 109.46551 * 119.99697 * 2 1 3 12 12 C 1.53936 * 113.73551 * 281.72763 * 11 2 1 13 13 N 1.47964 * 86.18197 * 221.92392 * 12 11 2 14 14 C 1.46896 * 110.99673 * 137.58280 * 13 12 11 15 15 C 1.50704 * 109.47130 * 90.64197 * 14 13 12 16 16 O 1.21298 * 119.99829 * 359.97438 * 15 14 13 17 17 N 1.34772 * 119.99913 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99890 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99987 * 359.97438 * 18 17 15 20 20 C 1.38947 * 119.99888 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00221 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99933 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46849 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47160 * 119.99839 * 22 20 18 25 25 H 1.48492 * 109.47170 * 240.00221 * 22 20 18 26 26 C 1.47960 * 90.76026 * 24.68966 * 13 12 11 27 27 H 1.09001 * 109.46779 * 60.05173 * 1 2 3 28 28 H 1.09007 * 109.47194 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47477 * 300.05459 * 1 2 3 30 30 H 0.97004 * 120.00174 * 265.00412 * 4 2 1 31 31 H 1.09002 * 109.46965 * 299.99524 * 7 5 4 32 32 H 1.08999 * 109.47385 * 59.99500 * 7 5 4 33 33 H 0.96999 * 119.99977 * 0.02562 * 9 8 7 34 34 H 0.97003 * 119.99874 * 179.97438 * 9 8 7 35 35 H 1.09003 * 112.94304 * 53.44233 * 11 2 1 36 36 H 1.08999 * 113.76013 * 336.24225 * 12 11 2 37 37 H 1.09003 * 113.75580 * 107.60586 * 12 11 2 38 38 H 1.08997 * 109.47205 * 210.63788 * 14 13 12 39 39 H 1.08998 * 109.47782 * 330.64145 * 14 13 12 40 40 H 0.97000 * 120.00248 * 0.02562 * 17 15 14 41 41 H 0.97005 * 120.00153 * 179.97438 * 21 20 18 42 42 H 1.09005 * 113.75898 * 220.98755 * 26 13 12 43 43 H 1.09003 * 113.86036 * 89.64385 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8583 1.1582 -2.4117 7 6 2.6490 -0.7290 -3.5876 8 6 2.6994 0.2392 -4.7414 9 7 3.1208 -0.1767 -5.9521 10 8 2.3606 1.3926 -4.5804 11 6 2.0398 -0.7212 1.2493 12 6 1.9763 0.1339 2.5277 13 7 3.3108 -0.4202 2.8461 14 6 4.2037 0.6237 3.3664 15 6 4.0861 0.6829 4.8677 16 8 3.3322 -0.0703 5.4471 17 7 4.8187 1.5725 5.5665 18 6 4.7113 1.6267 6.9322 19 1 4.0394 0.9567 7.4481 20 6 5.4661 2.5443 7.6526 21 7 6.2825 3.3605 7.0248 22 14 5.3204 2.6176 9.5135 23 1 4.3410 1.6007 9.9737 24 1 6.6450 2.3407 10.1250 25 1 4.8599 3.9692 9.9210 26 6 3.5699 -0.6729 1.4115 27 1 -0.3633 0.5130 -0.8905 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5146 0.8894 30 1 2.2490 -1.6319 -1.1525 31 1 3.6482 -1.1215 -3.3984 32 1 1.9762 -1.5508 -3.8325 33 1 3.3914 -1.0992 -6.0810 34 1 3.1529 0.4465 -6.6949 35 1 1.6177 -1.7194 1.3657 36 1 1.9802 1.2074 2.3387 37 1 1.1956 -0.1738 3.2235 38 1 5.2326 0.3919 3.0915 39 1 3.9224 1.5874 2.9418 40 1 5.4213 2.1751 5.1031 41 1 6.8092 4.0014 7.5277 42 1 4.0626 -1.6253 1.2153 43 1 4.0401 0.1635 0.8943 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755384957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:02 Heat of formation + Delta-G solvation = -73.722535 kcal Electronic energy + Delta-G solvation = -25411.047854 eV Core-core repulsion = 21492.423641 eV Total energy + Delta-G solvation = -3918.624213 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.72454 -40.00411 -38.69598 -37.69400 -35.32706 -34.02039 -33.83607 -32.08256 -31.20627 -30.19894 -29.22724 -26.02020 -25.74351 -24.17770 -22.58056 -21.20400 -20.54308 -19.63545 -19.16326 -17.96910 -17.76080 -17.58481 -16.56897 -16.20745 -16.15053 -15.84737 -15.47859 -14.93930 -14.58808 -14.52496 -14.20775 -13.87579 -13.74175 -13.60862 -13.45808 -12.95538 -12.77648 -12.54469 -12.34957 -12.23955 -11.89372 -11.54159 -11.27831 -11.05454 -10.88708 -10.82649 -10.55330 -10.46751 -10.31411 -10.18045 -10.02957 -9.67580 -9.47183 -9.26268 -8.68225 -8.12988 -7.91866 -6.37722 -3.78403 2.27692 2.51660 2.63072 3.18952 3.29013 3.32607 3.36433 3.92377 3.97332 4.18107 4.24638 4.38667 4.57506 4.58380 4.73013 4.83987 5.01542 5.07156 5.18058 5.23770 5.29537 5.44672 5.48545 5.57184 5.69367 5.71585 5.76690 5.81297 5.97672 6.04716 6.23849 6.31644 6.34341 6.39964 6.61763 6.90334 7.20484 7.28660 7.59038 7.91613 8.10587 8.11243 8.66581 9.22672 9.59386 10.11813 10.80296 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.026701 B = 0.002189 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.411768 B =12790.465569 C =13276.235635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.152 3.848 3 H 0.088 0.912 4 N -0.726 5.726 5 C 0.510 3.490 6 O -0.495 6.495 7 C -0.168 4.168 8 C 0.514 3.486 9 N -0.861 5.861 10 O -0.496 6.496 11 C -0.125 4.125 12 C 0.022 3.978 13 N -0.449 5.449 14 C 0.010 3.990 15 C 0.447 3.553 16 O -0.576 6.576 17 N -0.568 5.568 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.020 3.980 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.005 3.995 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.399 0.601 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.399 0.601 34 H 0.403 0.597 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.391 0.609 41 H 0.270 0.730 42 H 0.087 0.913 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.505 -11.508 -25.264 28.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 H 0.106 0.894 4 N -0.379 5.379 5 C 0.294 3.706 6 O -0.367 6.367 7 C -0.211 4.211 8 C 0.296 3.704 9 N -0.427 5.427 10 O -0.367 6.367 11 C -0.145 4.145 12 C -0.107 4.107 13 N -0.171 5.171 14 C -0.123 4.123 15 C 0.232 3.768 16 O -0.459 6.459 17 N -0.205 5.205 18 C -0.426 4.426 19 H 0.121 0.879 20 C -0.181 4.181 21 N -0.545 5.545 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.124 4.124 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.232 0.768 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.227 0.773 34 H 0.234 0.766 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.224 0.776 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.296 -10.761 -24.012 27.056 hybrid contribution 0.834 0.409 -0.258 0.964 sum -5.462 -10.352 -24.270 26.945 Atomic orbital electron populations 1.22136 0.94969 1.02138 1.02740 1.21029 0.94278 0.97185 0.82795 0.89358 1.46017 1.68394 1.13973 1.09531 1.19931 0.79025 0.87623 0.84063 1.90882 1.46937 1.15017 1.83843 1.21601 1.05644 1.00021 0.93810 1.20017 0.77569 0.88940 0.83884 1.43871 1.70989 1.15806 1.12061 1.90936 1.44747 1.18340 1.82688 1.23338 0.96428 1.00920 0.93783 1.23923 0.94582 0.97464 0.94729 1.68379 1.01853 1.33492 1.13341 1.22483 0.98678 0.94513 0.96577 1.19697 0.84985 0.84297 0.87806 1.90517 1.41034 1.43609 1.70747 1.41893 1.38495 1.32700 1.07452 1.19744 1.23226 1.18088 0.81575 0.87913 1.25259 0.96195 0.96010 1.00641 1.69622 1.26572 1.21740 1.36542 0.85804 0.78112 0.78123 0.82328 1.19236 1.20793 1.20796 1.23971 0.95565 1.02066 0.90836 0.92199 0.92411 0.91224 0.76768 0.85969 0.86085 0.77307 0.76639 0.87742 0.91206 0.88785 0.89517 0.92412 0.77563 0.91982 0.89500 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.44 37.16 0.35 -1.17 16 2 C 0.15 1.48 2.29 -67.93 -0.16 1.33 16 3 H 0.09 1.09 7.48 -51.93 -0.39 0.71 16 4 N -0.73 -5.52 4.94 -53.81 -0.27 -5.79 16 5 C 0.51 5.04 7.79 -10.98 -0.09 4.96 16 6 O -0.49 -7.76 13.84 -18.96 -0.26 -8.02 16 7 C -0.17 -0.87 6.19 -29.03 -0.18 -1.05 16 8 C 0.51 4.36 8.09 -10.99 -0.09 4.27 16 9 N -0.86 -3.34 8.87 31.22 0.28 -3.06 16 10 O -0.50 -7.38 15.02 -18.97 -0.28 -7.66 16 11 C -0.13 -1.29 3.35 -89.69 -0.30 -1.59 16 12 C 0.02 0.32 7.41 -2.76 -0.02 0.30 16 13 N -0.45 -7.35 5.65 -239.71 -1.35 -8.71 16 14 C 0.01 0.17 5.28 -4.98 -0.03 0.15 16 15 C 0.45 10.89 7.83 -10.99 -0.09 10.80 16 16 O -0.58 -16.12 16.01 5.54 0.09 -16.03 16 17 N -0.57 -14.80 5.29 -10.96 -0.06 -14.85 16 18 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 19 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 20 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 21 N -0.90 -25.07 13.05 55.50 0.72 -24.35 16 22 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C 0.00 0.06 7.38 -2.77 -0.02 0.04 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 30 H 0.40 1.76 8.60 -40.82 -0.35 1.41 16 31 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.40 0.08 8.83 -40.82 -0.36 -0.28 16 34 H 0.40 1.47 8.93 -40.82 -0.36 1.11 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.97 7.36 -51.93 -0.38 0.59 16 37 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 39 H 0.06 0.97 7.38 -51.93 -0.38 0.58 16 40 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 41 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.77 7.88 -51.93 -0.41 0.36 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -40.12 366.77 -7.76 -47.88 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.27 Total: 8.77 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -0.85 Total: 9.89 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.68 Total: -56.77 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.46 Total: -31.71 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -40.12 -7.76 -47.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755384957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.844 kcal (2) G-P(sol) polarization free energy of solvation -40.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds