Wall clock time and date at job start Fri Apr 10 2020 18:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33227 * 126.01469 * 2 1 4 4 C 1.31534 * 109.75925 * 180.17359 * 3 2 1 5 5 O 1.35203 * 125.49637 * 179.82410 * 4 3 2 6 6 N 1.34946 * 109.01548 * 359.56198 * 4 3 2 7 7 H 0.97005 * 126.54801 * 180.27950 * 6 4 3 8 8 C 1.36718 * 126.01935 * 179.69400 * 2 1 3 9 9 C 1.46377 * 126.82448 * 0.02562 * 8 2 1 10 10 O 1.21732 * 120.00141 * 359.97077 * 9 8 2 11 11 N 1.34781 * 119.99454 * 179.97438 * 9 8 2 12 12 C 1.46507 * 119.99719 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47105 * 179.97438 * 12 11 9 14 14 O 1.42905 * 109.47011 * 65.00660 * 13 12 11 15 15 C 1.42898 * 114.00397 * 179.97438 * 14 13 12 16 16 C 1.52993 * 109.47468 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47406 * 179.97438 * 16 15 14 18 18 N 1.46493 * 109.47280 * 180.02562 * 17 16 15 19 19 C 1.36942 * 120.00029 * 180.02562 * 18 17 16 20 20 H 1.07994 * 119.99851 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99712 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00592 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99495 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47428 * 60.00103 * 23 21 19 25 25 H 1.48503 * 109.47075 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47266 * 299.99807 * 23 21 19 27 27 H 1.09009 * 109.46828 * 270.30281 * 1 2 3 28 28 H 1.08996 * 109.47048 * 30.30256 * 1 2 3 29 29 H 1.09001 * 109.46978 * 150.30769 * 1 2 3 30 30 H 0.96700 * 114.00205 * 269.69909 * 5 4 3 31 31 H 0.96997 * 120.00313 * 359.97438 * 11 9 8 32 32 H 1.09001 * 109.47514 * 300.00424 * 12 11 9 33 33 H 1.09005 * 109.46974 * 60.00155 * 12 11 9 34 34 H 1.09002 * 109.47055 * 185.00283 * 13 12 11 35 35 H 1.08992 * 109.47599 * 305.00432 * 13 12 11 36 36 H 1.08999 * 109.46716 * 299.99834 * 15 14 13 37 37 H 1.09001 * 109.46846 * 59.99659 * 15 14 13 38 38 H 1.09005 * 109.47173 * 300.00257 * 16 15 14 39 39 H 1.09001 * 109.47023 * 60.00187 * 16 15 14 40 40 H 1.08999 * 109.46925 * 300.00344 * 17 16 15 41 41 H 1.09001 * 109.46698 * 60.00207 * 17 16 15 42 42 H 0.97003 * 119.99770 * 0.02562 * 18 17 16 43 43 H 0.96996 * 120.00105 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7094 -0.0038 5 8 4.6150 1.5464 -0.0082 6 7 3.6182 -0.6384 0.0034 7 1 4.4244 -1.1779 0.0065 8 6 2.3110 -1.1058 0.0059 9 6 1.8793 -2.5044 0.0129 10 8 0.6924 -2.7750 0.0143 11 7 2.7959 -3.4925 0.0177 12 6 2.3638 -4.8924 0.0252 13 6 3.5916 -5.8051 0.0289 14 8 4.3145 -5.6262 1.2485 15 6 5.4860 -6.4376 1.3543 16 6 6.1766 -6.1643 2.6919 17 6 7.4306 -7.0335 2.8054 18 7 8.0916 -6.7723 4.0864 19 6 9.2425 -7.4392 4.4116 20 1 9.6627 -8.1581 3.7239 21 6 9.8685 -7.1920 5.6257 22 7 9.3561 -6.3163 6.4641 23 14 11.4381 -8.1023 6.0696 24 1 12.4851 -7.8056 5.0592 25 1 11.9043 -7.6613 7.4088 26 1 11.1732 -9.5633 6.0935 27 1 -0.3633 0.0054 1.0278 28 1 -0.3633 0.8872 -0.5185 29 1 -0.3633 -0.8927 -0.5091 30 1 4.9238 1.7853 -0.8929 31 1 3.7415 -3.2769 0.0162 32 1 1.7659 -5.0834 0.9164 33 1 1.7653 -5.0927 -0.8636 34 1 3.2724 -6.8439 -0.0552 35 1 4.2342 -5.5531 -0.8147 36 1 5.2057 -7.4894 1.2980 37 1 6.1680 -6.1991 0.5382 38 1 6.4570 -5.1124 2.7478 39 1 5.4948 -6.4025 3.5082 40 1 7.1499 -8.0853 2.7497 41 1 8.1126 -6.7957 1.9891 42 1 7.7139 -6.1268 4.7043 43 1 9.7938 -6.1433 7.3123 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755554136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:04 Heat of formation + Delta-G solvation = -58.650652 kcal Electronic energy + Delta-G solvation = -24677.004545 eV Core-core repulsion = 20759.033898 eV Total energy + Delta-G solvation = -3917.970647 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.67649 -39.78984 -38.31938 -37.81895 -35.61444 -34.94218 -33.63880 -32.40348 -31.26753 -30.28563 -29.18925 -27.24419 -25.14915 -23.75052 -22.79270 -22.59192 -21.55588 -20.93476 -20.42861 -19.80713 -18.29504 -17.12208 -17.00506 -16.78660 -16.74853 -16.17447 -15.73417 -15.32956 -14.82451 -14.64273 -14.41719 -14.16605 -13.81524 -13.53878 -13.32637 -13.09295 -12.99900 -12.92782 -12.74145 -12.41251 -12.28309 -11.80535 -11.39697 -10.95866 -10.83763 -10.78754 -10.76870 -10.66985 -10.49867 -10.27064 -10.12715 -9.75861 -9.75364 -9.55834 -8.91558 -8.78082 -6.97808 -5.80071 -3.09883 0.73940 1.94325 2.24501 2.70103 2.92218 3.37596 3.41251 3.41479 3.46113 3.47277 4.30033 4.44804 4.55967 4.60650 4.73288 4.77799 5.01680 5.12589 5.15357 5.18316 5.28205 5.48683 5.50787 5.51928 5.52712 5.61876 5.66449 5.86273 5.94510 5.99073 6.12136 6.18621 6.20712 6.28544 6.73653 6.78355 6.94584 7.03882 7.12238 7.38487 7.64919 7.74536 8.38487 9.49340 10.06592 10.41168 11.42714 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.002124 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.841825 B =13181.972374 C =14509.350332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.117 3.883 3 N -0.489 5.489 4 C 0.417 3.583 5 O -0.439 6.439 6 N -0.555 5.555 7 H 0.424 0.576 8 C -0.087 4.087 9 C 0.598 3.402 10 O -0.523 6.523 11 N -0.722 5.722 12 C 0.124 3.876 13 C 0.047 3.953 14 O -0.388 6.388 15 C 0.068 3.932 16 C -0.125 4.125 17 C 0.157 3.843 18 N -0.733 5.733 19 C -0.244 4.244 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.910 3.090 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.408 0.592 31 H 0.399 0.601 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.385 0.615 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.509 10.246 -20.420 27.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.018 4.018 3 N -0.220 5.220 4 C 0.115 3.885 5 O -0.240 6.240 6 N -0.173 5.173 7 H 0.263 0.737 8 C -0.202 4.202 9 C 0.385 3.615 10 O -0.399 6.399 11 N -0.374 5.374 12 C 0.001 3.999 13 C -0.030 4.030 14 O -0.307 6.307 15 C -0.009 4.009 16 C -0.163 4.163 17 C 0.029 3.971 18 N -0.378 5.378 19 C -0.375 4.375 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.267 0.733 31 H 0.233 0.767 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.218 0.782 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.516 10.880 -19.664 27.890 hybrid contribution 2.541 -1.314 -0.117 2.863 sum -13.975 9.566 -19.781 26.040 Atomic orbital electron populations 1.20364 0.85823 1.03941 1.03549 1.20984 0.96952 0.85836 0.98067 1.70319 0.98583 1.30291 1.22836 1.20199 0.87456 0.78665 1.02151 1.84870 1.43203 1.61487 1.34481 1.43737 1.08818 1.08017 1.56777 0.73667 1.20742 0.83069 0.95150 1.21191 1.16626 0.85849 0.82401 0.76622 1.90848 1.15752 1.82861 1.50426 1.45807 1.09550 1.06420 1.75628 1.21462 0.95933 0.78906 1.03589 1.22730 0.93081 0.99292 0.87935 1.87931 1.39801 1.65286 1.37723 1.22521 0.85655 0.93957 0.98743 1.21674 0.97573 1.01608 0.95409 1.20503 0.90833 0.95724 0.90023 1.42330 1.28461 1.50296 1.16669 1.19181 1.00227 1.17306 1.00749 0.91181 1.24775 0.99516 0.99703 0.97004 1.69651 1.41163 1.37047 1.10265 0.86234 0.83135 0.79218 0.77381 1.21236 1.21610 1.21201 0.90264 0.90767 0.88901 0.73350 0.76714 0.89955 0.89583 0.91270 0.92737 0.93077 0.93317 0.91299 0.91085 0.96303 0.96395 0.78180 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 9.87 36.01 0.36 -0.36 16 2 C 0.12 1.27 7.14 -82.53 -0.59 0.68 16 3 N -0.49 -5.58 11.22 -10.83 -0.12 -5.70 16 4 C 0.42 3.82 9.43 -89.60 -0.84 2.97 16 5 O -0.44 -2.99 13.62 -17.30 -0.24 -3.23 16 6 N -0.55 -4.27 6.12 -10.91 -0.07 -4.34 16 7 H 0.42 2.06 8.32 -40.82 -0.34 1.72 16 8 C -0.09 -0.87 7.08 -81.97 -0.58 -1.45 16 9 C 0.60 6.26 7.78 -12.98 -0.10 6.16 16 10 O -0.52 -6.74 14.80 5.16 0.08 -6.66 16 11 N -0.72 -6.05 5.50 -61.71 -0.34 -6.39 16 12 C 0.12 0.99 6.06 -4.04 -0.02 0.97 16 13 C 0.05 0.36 6.07 37.15 0.23 0.59 16 14 O -0.39 -4.45 10.29 -35.23 -0.36 -4.81 16 15 C 0.07 0.82 5.94 37.15 0.22 1.04 16 16 C -0.12 -1.99 5.70 -26.73 -0.15 -2.14 16 17 C 0.16 3.09 6.26 -4.05 -0.03 3.07 16 18 N -0.73 -18.80 5.60 -59.91 -0.34 -19.14 16 19 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 23 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.87 6.46 -51.93 -0.34 0.53 16 30 H 0.41 0.48 9.06 45.56 0.41 0.89 16 31 H 0.40 2.69 7.71 -40.82 -0.31 2.38 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.38 10.39 7.67 -40.82 -0.31 10.07 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -36.59 370.96 -7.36 -43.96 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.51 Total: 7.09 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.76 Total: 4.02 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: -0.14 Total: -63.29 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.52 Total: -14.70 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.59 -7.36 -43.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755554136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.692 kcal (2) G-P(sol) polarization free energy of solvation -36.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds