Wall clock time and date at job start Fri Apr 10 2020 18:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33227 * 126.01469 * 2 1 4 4 C 1.31534 * 109.75925 * 180.17359 * 3 2 1 5 5 O 1.35203 * 125.49637 * 179.82410 * 4 3 2 6 6 N 1.34946 * 109.01548 * 359.56198 * 4 3 2 7 7 H 0.97005 * 126.54801 * 180.27950 * 6 4 3 8 8 C 1.36718 * 126.01935 * 179.69400 * 2 1 3 9 9 C 1.46377 * 126.82448 * 0.02562 * 8 2 1 10 10 O 1.21732 * 120.00141 * 359.97077 * 9 8 2 11 11 N 1.34781 * 119.99454 * 179.97438 * 9 8 2 12 12 C 1.46507 * 119.99719 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47105 * 179.97438 * 12 11 9 14 14 O 1.42905 * 109.47011 * 65.00660 * 13 12 11 15 15 C 1.42898 * 114.00397 * 179.97438 * 14 13 12 16 16 C 1.52993 * 109.47468 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47406 * 179.97438 * 16 15 14 18 18 N 1.46493 * 109.47280 * 180.02562 * 17 16 15 19 19 C 1.36942 * 120.00029 * 180.02562 * 18 17 16 20 20 H 1.07994 * 119.99851 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99712 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00592 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99495 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47428 * 60.00103 * 23 21 19 25 25 H 1.48503 * 109.47075 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47266 * 299.99807 * 23 21 19 27 27 H 1.09009 * 109.46828 * 270.30281 * 1 2 3 28 28 H 1.08996 * 109.47048 * 30.30256 * 1 2 3 29 29 H 1.09001 * 109.46978 * 150.30769 * 1 2 3 30 30 H 0.96700 * 114.00205 * 269.69909 * 5 4 3 31 31 H 0.96997 * 120.00313 * 359.97438 * 11 9 8 32 32 H 1.09001 * 109.47514 * 300.00424 * 12 11 9 33 33 H 1.09005 * 109.46974 * 60.00155 * 12 11 9 34 34 H 1.09002 * 109.47055 * 185.00283 * 13 12 11 35 35 H 1.08992 * 109.47599 * 305.00432 * 13 12 11 36 36 H 1.08999 * 109.46716 * 299.99834 * 15 14 13 37 37 H 1.09001 * 109.46846 * 59.99659 * 15 14 13 38 38 H 1.09005 * 109.47173 * 300.00257 * 16 15 14 39 39 H 1.09001 * 109.47023 * 60.00187 * 16 15 14 40 40 H 1.08999 * 109.46925 * 300.00344 * 17 16 15 41 41 H 1.09001 * 109.46698 * 60.00207 * 17 16 15 42 42 H 0.97003 * 119.99770 * 0.02562 * 18 17 16 43 43 H 0.96996 * 120.00105 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7094 -0.0038 5 8 4.6150 1.5464 -0.0082 6 7 3.6182 -0.6384 0.0034 7 1 4.4244 -1.1779 0.0065 8 6 2.3110 -1.1058 0.0059 9 6 1.8793 -2.5044 0.0129 10 8 0.6924 -2.7750 0.0143 11 7 2.7959 -3.4925 0.0177 12 6 2.3638 -4.8924 0.0252 13 6 3.5916 -5.8051 0.0289 14 8 4.3145 -5.6262 1.2485 15 6 5.4860 -6.4376 1.3543 16 6 6.1766 -6.1643 2.6919 17 6 7.4306 -7.0335 2.8054 18 7 8.0916 -6.7723 4.0864 19 6 9.2425 -7.4392 4.4116 20 1 9.6627 -8.1581 3.7239 21 6 9.8685 -7.1920 5.6257 22 7 9.3561 -6.3163 6.4641 23 14 11.4381 -8.1023 6.0696 24 1 12.4851 -7.8056 5.0592 25 1 11.9043 -7.6613 7.4088 26 1 11.1732 -9.5633 6.0935 27 1 -0.3633 0.0054 1.0278 28 1 -0.3633 0.8872 -0.5185 29 1 -0.3633 -0.8927 -0.5091 30 1 4.9238 1.7853 -0.8929 31 1 3.7415 -3.2769 0.0162 32 1 1.7659 -5.0834 0.9164 33 1 1.7653 -5.0927 -0.8636 34 1 3.2724 -6.8439 -0.0552 35 1 4.2342 -5.5531 -0.8147 36 1 5.2057 -7.4894 1.2980 37 1 6.1680 -6.1991 0.5382 38 1 6.4570 -5.1124 2.7478 39 1 5.4948 -6.4025 3.5082 40 1 7.1499 -8.0853 2.7497 41 1 8.1126 -6.7957 1.9891 42 1 7.7139 -6.1268 4.7043 43 1 9.7938 -6.1433 7.3123 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755554136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:04 Heat of formation + Delta-G solvation = -91.647872 kcal Electronic energy + Delta-G solvation = -24678.435412 eV Core-core repulsion = 20759.033898 eV Total energy + Delta-G solvation = -3919.401514 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.38237 -40.56326 -39.16520 -38.41337 -37.06831 -36.01139 -34.43236 -34.05132 -32.10327 -31.63941 -30.26714 -27.98128 -26.79148 -24.53016 -24.22002 -23.45724 -22.40904 -22.21205 -21.16985 -20.45107 -19.17232 -18.93854 -17.85081 -17.53431 -17.47051 -16.98728 -16.62400 -16.59593 -16.03971 -15.64180 -15.50321 -15.26762 -15.00433 -14.94204 -14.51497 -14.25320 -13.86544 -13.62342 -13.39142 -13.31028 -13.16178 -13.05676 -12.77161 -12.62634 -12.44848 -12.11221 -12.03779 -11.95575 -11.76853 -11.55111 -11.22509 -11.07349 -10.95053 -10.56383 -10.29976 -9.49936 -9.04681 -7.97821 -5.28145 0.02091 1.30771 1.46540 1.50136 1.52243 1.56438 2.00560 2.14573 2.48940 2.64446 2.79796 3.35843 3.65827 3.78226 3.89617 4.02190 4.06678 4.08090 4.19484 4.35240 4.40738 4.42597 4.51883 4.61700 4.72098 4.75666 4.79749 4.82184 4.87129 4.93398 4.96541 5.25723 5.30881 5.31948 5.44833 5.46839 5.76228 6.21190 6.25630 6.28163 6.62747 6.66998 6.99827 7.29867 8.05576 8.27775 9.25794 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.002124 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.841825 B =13181.972374 C =14509.350332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.099 3.901 3 N -0.521 5.521 4 C 0.423 3.577 5 O -0.443 6.443 6 N -0.541 5.541 7 H 0.437 0.563 8 C -0.094 4.094 9 C 0.598 3.402 10 O -0.552 6.552 11 N -0.713 5.713 12 C 0.124 3.876 13 C 0.047 3.953 14 O -0.408 6.408 15 C 0.078 3.922 16 C -0.115 4.115 17 C 0.155 3.845 18 N -0.751 5.751 19 C -0.250 4.250 20 H 0.080 0.920 21 C -0.079 4.079 22 N -0.972 5.972 23 Si 0.978 3.022 24 H -0.275 1.275 25 H -0.296 1.296 26 H -0.276 1.276 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.433 0.567 31 H 0.408 0.592 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.025 0.975 41 H 0.029 0.971 42 H 0.373 0.627 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.597 9.450 -22.179 28.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.036 4.036 3 N -0.253 5.253 4 C 0.121 3.879 5 O -0.248 6.248 6 N -0.160 5.160 7 H 0.279 0.721 8 C -0.210 4.210 9 C 0.385 3.615 10 O -0.431 6.431 11 N -0.364 5.364 12 C 0.001 3.999 13 C -0.029 4.029 14 O -0.328 6.328 15 C 0.002 3.998 16 C -0.153 4.153 17 C 0.028 3.972 18 N -0.394 5.394 19 C -0.382 4.382 20 H 0.097 0.903 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.807 3.193 24 H -0.201 1.201 25 H -0.222 1.222 26 H -0.202 1.202 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.295 0.705 31 H 0.243 0.757 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.047 0.953 42 H 0.204 0.796 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.566 10.053 -21.498 28.381 hybrid contribution 2.245 -1.030 0.351 2.495 sum -13.320 9.024 -21.147 26.572 Atomic orbital electron populations 1.20344 0.85273 1.04132 1.03556 1.21287 0.97719 0.86203 0.98429 1.70281 0.99710 1.30977 1.24324 1.20252 0.87507 0.79245 1.00878 1.84833 1.42248 1.60959 1.36788 1.43587 1.08675 1.07733 1.56046 0.72065 1.20654 0.83818 0.94813 1.21668 1.16696 0.85666 0.82829 0.76329 1.90829 1.16968 1.83306 1.52003 1.45768 1.09767 1.06338 1.74573 1.21523 0.96242 0.78620 1.03497 1.22903 0.92781 1.00113 0.87090 1.87886 1.39762 1.65328 1.39850 1.22305 0.86214 0.94660 0.96650 1.21485 0.95978 1.00210 0.97583 1.20679 0.92167 0.96716 0.87611 1.42613 1.28352 1.49872 1.18537 1.19644 1.00793 1.16926 1.00794 0.90252 1.25669 1.03116 1.01068 0.97254 1.69821 1.42809 1.39021 1.10578 0.85143 0.79271 0.78181 0.76747 1.20080 1.22213 1.20197 0.90325 0.89774 0.89416 0.70457 0.75659 0.91740 0.88032 0.89639 0.90456 0.91956 0.91342 0.92107 0.92667 0.95707 0.95331 0.79591 0.93920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 9.87 71.24 0.70 -0.70 16 2 C 0.10 2.15 7.14 41.99 0.30 2.45 16 3 N -0.52 -11.72 11.22 -301.67 -3.39 -15.10 16 4 C 0.42 7.30 9.43 179.99 1.70 9.00 16 5 O -0.44 -5.32 13.62 -84.83 -1.16 -6.47 16 6 N -0.54 -7.68 6.12 -300.14 -1.84 -9.51 16 7 H 0.44 3.49 8.32 -92.70 -0.77 2.72 16 8 C -0.09 -1.83 7.08 39.80 0.28 -1.55 16 9 C 0.60 12.20 7.78 86.36 0.67 12.87 16 10 O -0.55 -14.29 14.80 -4.45 -0.07 -14.36 16 11 N -0.71 -10.90 5.50 -467.34 -2.57 -13.47 16 12 C 0.12 1.77 6.06 86.38 0.52 2.29 16 13 C 0.05 0.59 6.07 71.98 0.44 1.03 16 14 O -0.41 -8.38 10.29 -148.98 -1.53 -9.91 16 15 C 0.08 1.68 5.94 71.98 0.43 2.10 16 16 C -0.11 -3.52 5.70 30.59 0.17 -3.35 16 17 C 0.15 5.89 6.26 86.38 0.54 6.43 16 18 N -0.75 -38.46 5.60 -343.47 -1.92 -40.38 16 19 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16 20 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 21 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 22 N -0.97 -60.06 13.06 21.65 0.28 -59.77 16 23 Si 0.98 45.78 29.55 68.60 2.03 47.80 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 27 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 1.70 6.46 -2.39 -0.02 1.68 16 30 H 0.43 0.14 9.06 -74.06 -0.67 -0.53 16 31 H 0.41 4.68 7.71 -92.71 -0.72 3.97 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 40 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.37 20.48 7.67 -92.71 -0.71 19.77 16 43 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -78.77 370.96 -4.89 -83.66 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: -1.79 Total: 24.15 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 7.06 Total: 13.36 kcal Atomic # 7 Polarization: -128.80 SS G_CDS: -9.43 Total: -138.24 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -2.75 Total: -30.74 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -78.77 -4.89 -83.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755554136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.989 kcal (2) G-P(sol) polarization free energy of solvation -78.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds