Wall clock time and date at job start Fri Apr 10 2020 18:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46920 * 2 1 4 4 C 1.52999 * 109.46978 * 239.99943 * 2 1 3 5 5 N 1.46502 * 109.46820 * 183.13946 * 4 2 1 6 6 C 1.46503 * 119.99926 * 95.38151 * 5 4 2 7 7 C 1.34771 * 119.99611 * 275.65177 * 5 4 2 8 8 O 1.21278 * 120.00350 * 355.16594 * 7 5 4 9 9 C 1.50704 * 119.99686 * 175.16286 * 7 5 4 10 10 N 1.46499 * 109.47109 * 185.34154 * 9 7 5 11 11 C 1.46411 * 119.53184 * 85.31929 * 10 9 7 12 12 C 1.53040 * 109.51911 * 144.12076 * 11 10 9 13 13 C 1.50817 * 109.18411 * 46.69351 * 12 11 10 14 14 O 1.21230 * 120.01581 * 145.78758 * 13 12 11 15 15 N 1.34553 * 119.96458 * 325.77139 * 13 12 11 16 16 C 1.34289 * 119.53931 * 265.04380 * 10 9 7 17 17 O 1.21539 * 119.20698 * 5.71619 * 16 10 9 18 18 N 1.46497 * 109.46970 * 119.99578 * 2 1 3 19 19 C 1.36930 * 120.00308 * 277.63368 * 18 2 1 20 20 H 1.08001 * 119.99896 * 4.79592 * 19 18 2 21 21 C 1.38812 * 120.00237 * 184.79537 * 19 18 2 22 22 N 1.31616 * 120.00318 * 184.45917 * 21 19 18 23 23 Si 1.86803 * 119.99877 * 4.45398 * 21 19 18 24 24 H 1.48497 * 109.47222 * 93.93815 * 23 21 19 25 25 H 1.48506 * 109.46739 * 213.93960 * 23 21 19 26 26 H 1.48502 * 109.47003 * 333.93500 * 23 21 19 27 27 H 1.09001 * 109.47688 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47241 * 300.00372 * 1 2 3 29 29 H 1.09002 * 109.47673 * 60.00199 * 1 2 3 30 30 H 1.09001 * 109.47145 * 63.13869 * 4 2 1 31 31 H 1.09001 * 109.46696 * 303.13923 * 4 2 1 32 32 H 1.09003 * 109.46861 * 270.27051 * 6 5 4 33 33 H 1.09000 * 109.46727 * 30.27478 * 6 5 4 34 34 H 1.08996 * 109.46750 * 150.27045 * 6 5 4 35 35 H 1.08998 * 109.47059 * 305.34369 * 9 7 5 36 36 H 1.09007 * 109.47078 * 65.34384 * 9 7 5 37 37 H 1.08997 * 109.46435 * 264.13482 * 11 10 9 38 38 H 1.08999 * 109.46293 * 24.11369 * 11 10 9 39 39 H 1.08995 * 109.52310 * 166.60669 * 12 11 10 40 40 H 1.08999 * 109.52193 * 286.78400 * 12 11 10 41 41 H 0.97003 * 119.51113 * 184.40646 * 15 13 12 42 42 H 0.97006 * 119.99607 * 97.63707 * 18 2 1 43 43 H 0.96995 * 120.00552 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5030 -0.7871 -1.2120 6 6 4.1694 -1.9814 -0.6868 7 6 4.2358 0.2533 -1.6558 8 8 3.6878 1.2070 -2.1665 9 6 5.7363 0.2314 -1.5174 10 7 6.2857 1.5177 -1.9531 11 6 6.3575 2.6304 -1.0042 12 6 7.6264 3.4449 -1.2664 13 6 7.7510 3.7055 -2.7466 14 8 8.2302 4.7469 -3.1409 15 7 7.3303 2.7813 -3.6294 16 6 6.7214 1.6581 -3.2156 17 8 6.5564 0.7484 -4.0045 18 7 2.0183 -0.6905 1.1962 19 6 2.0980 -0.0216 2.3884 20 1 1.7289 0.9905 2.4654 21 6 2.6531 -0.6443 3.4979 22 7 2.6504 -0.0351 4.6645 23 14 3.4039 -2.3470 3.3351 24 1 4.8630 -2.2232 3.0885 25 1 3.1767 -3.1100 4.5888 26 1 2.7686 -3.0616 2.1989 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.7233 -0.1760 -2.1383 31 1 1.6313 -1.7314 -1.2777 32 1 4.3248 -1.8685 0.3862 33 1 3.5470 -2.8565 -0.8738 34 1 5.1320 -2.1077 -1.1821 35 1 6.0026 0.0570 -0.4749 36 1 6.1467 -0.5671 -2.1357 37 1 5.4835 3.2699 -1.1274 38 1 6.3809 2.2393 0.0130 39 1 7.5667 4.3938 -0.7334 40 1 8.4959 2.8860 -0.9206 41 1 7.4719 2.9272 -4.5779 42 1 2.2852 -1.6217 1.1437 43 1 3.0379 -0.4703 5.4399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755611369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:07 Heat of formation + Delta-G solvation = -66.377036 kcal Electronic energy + Delta-G solvation = -27241.017494 eV Core-core repulsion = 23322.711806 eV Total energy + Delta-G solvation = -3918.305688 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.86438 -39.85952 -38.94249 -36.74127 -36.13900 -34.81369 -34.47986 -32.22080 -31.68804 -29.65226 -28.27941 -27.00123 -25.28735 -25.23532 -23.47412 -23.04202 -20.53605 -19.71862 -18.83964 -18.48905 -17.92153 -17.73089 -17.23499 -16.63611 -16.14290 -15.52841 -15.21654 -14.96521 -14.81550 -14.73042 -14.55059 -13.99854 -13.70901 -13.36344 -13.26626 -12.84355 -12.74706 -12.64867 -12.43339 -12.22742 -12.13890 -11.84635 -11.69418 -11.43043 -11.03905 -10.90117 -10.74304 -10.61843 -10.48980 -10.43906 -10.10276 -10.04498 -9.66401 -9.04567 -8.93933 -8.38452 -7.30841 -5.83959 -3.18682 1.50375 2.05167 2.76282 2.78557 2.99385 3.22807 3.23115 3.26506 3.35212 4.07706 4.28356 4.48593 4.54678 4.65851 4.74524 5.07453 5.09519 5.15197 5.20351 5.23769 5.40742 5.46203 5.51432 5.54194 5.65309 5.73326 5.85742 5.88640 5.99005 6.13912 6.15036 6.24347 6.42307 6.63204 6.76073 7.01766 7.12332 7.25909 7.51990 7.92600 7.95109 8.32676 8.35239 9.14558 9.86315 10.07832 11.34721 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.004069 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.985559 B = 6880.477540 C = 7430.004140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.161 3.839 3 H 0.058 0.942 4 C 0.110 3.890 5 N -0.599 5.599 6 C 0.072 3.928 7 C 0.503 3.497 8 O -0.534 6.534 9 C 0.109 3.891 10 N -0.595 5.595 11 C 0.106 3.894 12 C -0.157 4.157 13 C 0.525 3.475 14 O -0.506 6.506 15 N -0.674 5.674 16 C 0.716 3.284 17 O -0.557 6.557 18 N -0.746 5.746 19 C -0.236 4.236 20 H 0.088 0.912 21 C 0.003 3.997 22 N -0.934 5.934 23 Si 0.881 3.119 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.278 1.278 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.129 0.871 40 H 0.115 0.885 41 H 0.425 0.575 42 H 0.359 0.641 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.135 -0.371 -12.474 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.051 3.949 3 H 0.076 0.924 4 C -0.013 4.013 5 N -0.332 5.332 6 C -0.071 4.071 7 C 0.289 3.711 8 O -0.410 6.410 9 C -0.018 4.018 10 N -0.331 5.331 11 C -0.016 4.016 12 C -0.197 4.197 13 C 0.313 3.687 14 O -0.379 6.379 15 N -0.343 5.343 16 C 0.417 3.583 17 O -0.432 6.432 18 N -0.390 5.390 19 C -0.366 4.366 20 H 0.106 0.894 21 C -0.192 4.192 22 N -0.582 5.582 23 Si 0.712 3.288 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.205 1.205 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.103 0.897 38 H 0.127 0.873 39 H 0.147 0.853 40 H 0.133 0.867 41 H 0.266 0.734 42 H 0.193 0.807 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.990 0.355 -12.985 15.798 hybrid contribution 0.436 -1.296 -0.089 1.371 sum 9.425 -0.942 -13.074 16.145 Atomic orbital electron populations 1.22321 0.98258 1.00892 1.00780 1.20603 0.92255 0.96398 0.85684 0.92435 1.21910 0.78434 1.01392 0.99575 1.47583 1.06941 1.16565 1.62091 1.21954 0.97716 0.87387 1.00077 1.20810 0.89626 0.82584 0.78037 1.90676 1.73034 1.33737 1.43588 1.21450 0.91768 0.85533 1.03001 1.46539 1.62923 1.13857 1.09814 1.21749 0.97282 0.88095 0.94479 1.22289 1.00898 1.04735 0.91779 1.21031 0.75620 0.82363 0.89657 1.90786 1.41755 1.24380 1.80960 1.44219 1.57027 1.20192 1.12857 1.15484 0.77928 0.82242 0.82623 1.90986 1.60874 1.39118 1.52192 1.42829 1.79395 1.10743 1.06046 1.19060 1.32752 0.98984 0.85782 0.89421 1.24676 1.01419 0.97613 0.95503 1.69699 1.50922 1.38217 0.99361 0.86626 0.79503 0.85865 0.76788 1.21132 1.21892 1.20496 0.93545 0.92120 0.94015 0.89987 0.90795 0.91650 0.90876 0.91327 0.86571 0.86365 0.89686 0.87319 0.85329 0.86687 0.73369 0.80697 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.46 37.16 0.35 -2.40 16 2 C 0.16 2.97 3.14 -67.93 -0.21 2.75 16 3 H 0.06 1.21 8.10 -51.93 -0.42 0.78 16 4 C 0.11 1.68 4.99 -4.04 -0.02 1.66 16 5 N -0.60 -8.72 2.71 -181.57 -0.49 -9.21 16 6 C 0.07 0.86 9.22 59.85 0.55 1.41 16 7 C 0.50 7.70 7.68 -10.99 -0.08 7.62 16 8 O -0.53 -9.93 16.08 5.56 0.09 -9.84 16 9 C 0.11 1.26 4.43 -5.19 -0.02 1.24 16 10 N -0.60 -6.85 2.29 -181.17 -0.41 -7.27 16 11 C 0.11 0.97 6.63 -4.07 -0.03 0.94 16 12 C -0.16 -1.14 6.28 -27.81 -0.17 -1.31 16 13 C 0.53 5.45 7.76 -11.03 -0.09 5.37 16 14 O -0.51 -6.72 17.93 5.60 0.10 -6.62 16 15 N -0.67 -7.24 5.18 -16.03 -0.08 -7.33 16 16 C 0.72 9.17 8.21 -87.78 -0.72 8.45 16 17 O -0.56 -8.79 16.58 5.33 0.09 -8.70 16 18 N -0.75 -16.05 4.50 -53.43 -0.24 -16.29 16 19 C -0.24 -6.20 10.39 -15.06 -0.16 -6.35 16 20 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 21 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 22 N -0.93 -27.89 13.97 55.49 0.78 -27.12 16 23 Si 0.88 20.12 27.17 -169.99 -4.62 15.50 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -5.80 6.18 56.52 0.35 -5.45 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.26 7.53 -51.93 -0.39 0.87 16 31 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 32 H 0.06 0.92 6.73 -51.93 -0.35 0.57 16 33 H 0.07 0.77 7.86 -51.93 -0.41 0.36 16 34 H 0.07 0.61 6.62 -51.93 -0.34 0.26 16 35 H 0.12 1.10 7.79 -51.93 -0.40 0.70 16 36 H 0.12 1.26 6.68 -51.92 -0.35 0.91 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.11 0.84 7.84 -51.93 -0.41 0.43 16 39 H 0.13 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.43 4.09 8.86 -40.82 -0.36 3.72 16 42 H 0.36 7.45 4.17 -40.82 -0.17 7.28 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -35.87 355.73 -6.29 -42.16 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.16 Total: 9.98 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: -0.70 Total: 19.37 kcal Atomic # 7 Polarization: -66.76 SS G_CDS: -0.45 Total: -67.21 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: 0.28 Total: -25.16 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.62 Total: 15.50 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.87 -6.29 -42.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755611369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.215 kcal (2) G-P(sol) polarization free energy of solvation -35.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds