Wall clock time and date at job start Fri Apr 10 2020 18:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46920 * 2 1 4 4 C 1.52999 * 109.46978 * 239.99943 * 2 1 3 5 5 N 1.46502 * 109.46820 * 183.13946 * 4 2 1 6 6 C 1.46503 * 119.99926 * 95.38151 * 5 4 2 7 7 C 1.34771 * 119.99611 * 275.65177 * 5 4 2 8 8 O 1.21278 * 120.00350 * 355.16594 * 7 5 4 9 9 C 1.50704 * 119.99686 * 175.16286 * 7 5 4 10 10 N 1.46499 * 109.47109 * 185.34154 * 9 7 5 11 11 C 1.46411 * 119.53184 * 85.31929 * 10 9 7 12 12 C 1.53040 * 109.51911 * 144.12076 * 11 10 9 13 13 C 1.50817 * 109.18411 * 46.69351 * 12 11 10 14 14 O 1.21230 * 120.01581 * 145.78758 * 13 12 11 15 15 N 1.34553 * 119.96458 * 325.77139 * 13 12 11 16 16 C 1.34289 * 119.53931 * 265.04380 * 10 9 7 17 17 O 1.21539 * 119.20698 * 5.71619 * 16 10 9 18 18 N 1.46497 * 109.46970 * 119.99578 * 2 1 3 19 19 C 1.36930 * 120.00308 * 277.63368 * 18 2 1 20 20 H 1.08001 * 119.99896 * 4.79592 * 19 18 2 21 21 C 1.38812 * 120.00237 * 184.79537 * 19 18 2 22 22 N 1.31616 * 120.00318 * 184.45917 * 21 19 18 23 23 Si 1.86803 * 119.99877 * 4.45398 * 21 19 18 24 24 H 1.48497 * 109.47222 * 93.93815 * 23 21 19 25 25 H 1.48506 * 109.46739 * 213.93960 * 23 21 19 26 26 H 1.48502 * 109.47003 * 333.93500 * 23 21 19 27 27 H 1.09001 * 109.47688 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47241 * 300.00372 * 1 2 3 29 29 H 1.09002 * 109.47673 * 60.00199 * 1 2 3 30 30 H 1.09001 * 109.47145 * 63.13869 * 4 2 1 31 31 H 1.09001 * 109.46696 * 303.13923 * 4 2 1 32 32 H 1.09003 * 109.46861 * 270.27051 * 6 5 4 33 33 H 1.09000 * 109.46727 * 30.27478 * 6 5 4 34 34 H 1.08996 * 109.46750 * 150.27045 * 6 5 4 35 35 H 1.08998 * 109.47059 * 305.34369 * 9 7 5 36 36 H 1.09007 * 109.47078 * 65.34384 * 9 7 5 37 37 H 1.08997 * 109.46435 * 264.13482 * 11 10 9 38 38 H 1.08999 * 109.46293 * 24.11369 * 11 10 9 39 39 H 1.08995 * 109.52310 * 166.60669 * 12 11 10 40 40 H 1.08999 * 109.52193 * 286.78400 * 12 11 10 41 41 H 0.97003 * 119.51113 * 184.40646 * 15 13 12 42 42 H 0.97006 * 119.99607 * 97.63707 * 18 2 1 43 43 H 0.96995 * 120.00552 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5030 -0.7871 -1.2120 6 6 4.1694 -1.9814 -0.6868 7 6 4.2358 0.2533 -1.6558 8 8 3.6878 1.2070 -2.1665 9 6 5.7363 0.2314 -1.5174 10 7 6.2857 1.5177 -1.9531 11 6 6.3575 2.6304 -1.0042 12 6 7.6264 3.4449 -1.2664 13 6 7.7510 3.7055 -2.7466 14 8 8.2302 4.7469 -3.1409 15 7 7.3303 2.7813 -3.6294 16 6 6.7214 1.6581 -3.2156 17 8 6.5564 0.7484 -4.0045 18 7 2.0183 -0.6905 1.1962 19 6 2.0980 -0.0216 2.3884 20 1 1.7289 0.9905 2.4654 21 6 2.6531 -0.6443 3.4979 22 7 2.6504 -0.0351 4.6645 23 14 3.4039 -2.3470 3.3351 24 1 4.8630 -2.2232 3.0885 25 1 3.1767 -3.1100 4.5888 26 1 2.7686 -3.0616 2.1989 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.7233 -0.1760 -2.1383 31 1 1.6313 -1.7314 -1.2777 32 1 4.3248 -1.8685 0.3862 33 1 3.5470 -2.8565 -0.8738 34 1 5.1320 -2.1077 -1.1821 35 1 6.0026 0.0570 -0.4749 36 1 6.1467 -0.5671 -2.1357 37 1 5.4835 3.2699 -1.1274 38 1 6.3809 2.2393 0.0130 39 1 7.5667 4.3938 -0.7334 40 1 8.4959 2.8860 -0.9206 41 1 7.4719 2.9272 -4.5779 42 1 2.2852 -1.6217 1.1437 43 1 3.0379 -0.4703 5.4399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755611369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:06 Heat of formation + Delta-G solvation = -94.164999 kcal Electronic energy + Delta-G solvation = -27242.222471 eV Core-core repulsion = 23322.711806 eV Total energy + Delta-G solvation = -3919.510665 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.77569 -40.97217 -39.95519 -38.06364 -37.21253 -35.88854 -35.75814 -34.02103 -32.56386 -31.36628 -29.35609 -28.04461 -26.47743 -26.05357 -25.23987 -24.04864 -21.95310 -20.89017 -19.86259 -19.59633 -19.36713 -18.82749 -18.28074 -17.64874 -17.18018 -16.77634 -16.52213 -16.24146 -15.83947 -15.71637 -15.59860 -15.42652 -14.99850 -14.67204 -14.31951 -14.20101 -13.98952 -13.71128 -13.57634 -13.35735 -13.30349 -13.06507 -12.79641 -12.68080 -12.58077 -12.36537 -12.13659 -11.88815 -11.73716 -11.70153 -11.41305 -11.40512 -11.18825 -10.93261 -9.95511 -9.61612 -9.19608 -7.94226 -5.27959 0.61861 1.15652 1.40895 1.47829 1.56180 1.65022 1.87752 2.12698 2.23669 2.55873 3.33041 3.36123 3.53388 3.58222 3.67019 3.94361 4.04969 4.11554 4.24818 4.30921 4.38102 4.41226 4.52013 4.63597 4.68049 4.72877 4.80502 4.83748 4.90403 4.94539 5.01225 5.05437 5.25146 5.37312 5.41443 5.66830 5.84920 6.23226 6.27253 6.38119 6.43083 6.98282 7.15924 7.19302 7.89200 8.14393 9.27751 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.004069 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.985559 B = 6880.477540 C = 7430.004140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.160 3.840 3 H 0.023 0.977 4 C 0.117 3.883 5 N -0.602 5.602 6 C 0.064 3.936 7 C 0.493 3.507 8 O -0.577 6.577 9 C 0.111 3.889 10 N -0.594 5.594 11 C 0.104 3.896 12 C -0.144 4.144 13 C 0.526 3.474 14 O -0.537 6.537 15 N -0.671 5.671 16 C 0.716 3.284 17 O -0.590 6.590 18 N -0.739 5.739 19 C -0.223 4.223 20 H 0.042 0.958 21 C -0.064 4.064 22 N -0.988 5.988 23 Si 0.953 3.047 24 H -0.264 1.264 25 H -0.308 1.308 26 H -0.243 1.243 27 H 0.062 0.938 28 H 0.030 0.970 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.144 0.856 36 H 0.133 0.867 37 H 0.065 0.935 38 H 0.128 0.872 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.427 0.573 42 H 0.369 0.631 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.434 -2.844 -13.271 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.051 3.949 3 H 0.041 0.959 4 C -0.007 4.007 5 N -0.334 5.334 6 C -0.079 4.079 7 C 0.281 3.719 8 O -0.457 6.457 9 C -0.015 4.015 10 N -0.329 5.329 11 C -0.018 4.018 12 C -0.184 4.184 13 C 0.316 3.684 14 O -0.412 6.412 15 N -0.339 5.339 16 C 0.418 3.582 17 O -0.468 6.468 18 N -0.384 5.384 19 C -0.355 4.355 20 H 0.060 0.940 21 C -0.254 4.254 22 N -0.639 5.639 23 Si 0.780 3.220 24 H -0.189 1.189 25 H -0.236 1.236 26 H -0.167 1.167 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.161 0.839 36 H 0.151 0.849 37 H 0.083 0.917 38 H 0.146 0.854 39 H 0.165 0.835 40 H 0.162 0.838 41 H 0.269 0.731 42 H 0.204 0.796 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.287 -2.131 -13.820 17.360 hybrid contribution -0.067 -0.413 0.143 0.442 sum 10.219 -2.544 -13.677 17.262 Atomic orbital electron populations 1.22204 0.96974 1.01839 1.00509 1.20679 0.93111 0.94898 0.86211 0.95921 1.21774 0.79409 1.02339 0.97170 1.47743 1.06662 1.17369 1.61614 1.22205 0.99732 0.86696 0.99233 1.21556 0.91241 0.82005 0.77142 1.90655 1.74157 1.35359 1.45534 1.21596 0.89064 0.86043 1.04820 1.46665 1.62069 1.14496 1.09689 1.21883 0.97481 0.87499 0.94906 1.22346 1.00938 1.05710 0.89385 1.21602 0.74450 0.81511 0.90799 1.90779 1.43292 1.25506 1.81623 1.44204 1.56611 1.19790 1.13330 1.15608 0.77762 0.82131 0.82745 1.90956 1.62281 1.40333 1.53185 1.42657 1.79522 1.10966 1.05298 1.18880 1.31443 0.97397 0.87738 0.94023 1.25519 1.02432 1.02764 0.94728 1.69917 1.52737 1.40769 1.00484 0.85474 0.79642 0.79761 0.77130 1.18939 1.23617 1.16689 0.91890 0.95072 0.91658 0.90175 0.87926 0.93326 0.88909 0.87983 0.83888 0.84943 0.91667 0.85397 0.83532 0.83795 0.73126 0.79610 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.13 9.46 71.98 0.68 -4.45 16 2 C 0.16 5.80 3.14 44.99 0.14 5.95 16 3 H 0.02 0.98 8.10 -2.39 -0.02 0.96 16 4 C 0.12 3.29 4.99 86.38 0.43 3.72 16 5 N -0.60 -15.97 2.71 -846.75 -2.29 -18.26 16 6 C 0.06 1.24 9.22 127.77 1.18 2.42 16 7 C 0.49 14.32 7.68 87.66 0.67 15.00 16 8 O -0.58 -21.45 16.08 -3.02 -0.05 -21.50 16 9 C 0.11 2.29 4.43 85.63 0.38 2.67 16 10 N -0.59 -12.70 2.29 -845.64 -1.94 -14.64 16 11 C 0.10 1.73 6.63 86.41 0.57 2.30 16 12 C -0.14 -1.76 6.28 29.90 0.19 -1.57 16 13 C 0.53 10.36 7.76 87.73 0.68 11.05 16 14 O -0.54 -13.95 17.93 -2.88 -0.05 -14.00 16 15 N -0.67 -14.03 5.18 -441.71 -2.29 -16.31 16 16 C 0.72 17.64 8.21 179.36 1.47 19.11 16 17 O -0.59 -18.17 16.58 -3.84 -0.06 -18.23 16 18 N -0.74 -30.87 4.50 -322.95 -1.45 -32.33 16 19 C -0.22 -11.93 10.39 84.03 0.87 -11.06 16 20 H 0.04 2.56 8.06 -2.91 -0.02 2.54 16 21 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 22 N -0.99 -60.51 13.97 21.65 0.30 -60.21 16 23 Si 0.95 40.17 27.17 68.60 1.86 42.03 16 24 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 25 H -0.31 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.24 -8.66 6.18 99.48 0.61 -8.04 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 2.33 7.53 -2.39 -0.02 2.31 16 31 H 0.10 2.32 7.84 -2.39 -0.02 2.31 16 32 H 0.05 1.14 6.73 -2.39 -0.02 1.13 16 33 H 0.09 1.47 7.86 -2.39 -0.02 1.45 16 34 H 0.10 1.30 6.62 -2.39 -0.02 1.29 16 35 H 0.14 2.18 7.79 -2.39 -0.02 2.16 16 36 H 0.13 2.39 6.68 -2.38 -0.02 2.38 16 37 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.13 1.66 7.84 -2.39 -0.02 1.64 16 39 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.43 8.21 8.86 -92.71 -0.82 7.39 16 42 H 0.37 14.08 4.17 -92.70 -0.39 13.70 16 43 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -81.67 355.73 1.52 -80.15 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: -0.25 Total: 31.18 kcal Atomic # 6 Polarization: 34.38 SS G_CDS: 7.74 Total: 42.12 kcal Atomic # 7 Polarization: -134.07 SS G_CDS: -7.67 Total: -141.74 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -0.16 Total: -53.73 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 1.86 Total: 42.03 kcal Total: -81.67 1.52 -80.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755611369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.018 kcal (2) G-P(sol) polarization free energy of solvation -81.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds