Wall clock time and date at job start Fri Apr 10 2020 18:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46982 * 2 1 4 4 C 1.53000 * 109.47400 * 120.00305 * 2 1 3 5 5 N 1.46496 * 109.46986 * 175.00303 * 4 2 1 6 6 C 1.46504 * 119.99884 * 269.99545 * 5 4 2 7 7 C 1.34777 * 120.00258 * 90.00200 * 5 4 2 8 8 O 1.21279 * 120.00166 * 359.97438 * 7 5 4 9 9 C 1.50706 * 119.99762 * 179.97438 * 7 5 4 10 10 N 1.46500 * 109.46949 * 179.97438 * 9 7 5 11 11 C 1.46412 * 119.53498 * 269.73038 * 10 9 7 12 12 C 1.53353 * 109.35013 * 144.04777 * 11 10 9 13 13 C 1.50808 * 109.08985 * 46.99260 * 12 11 10 14 14 O 1.21227 * 120.01585 * 145.59033 * 13 12 11 15 15 N 1.34563 * 119.96229 * 325.61055 * 13 12 11 16 16 C 1.34288 * 119.53556 * 89.99864 * 10 9 7 17 17 O 1.21540 * 119.20990 * 5.64387 * 16 10 9 18 18 N 1.46496 * 109.47136 * 240.00612 * 2 1 3 19 19 C 1.36931 * 120.00231 * 84.99420 * 18 2 1 20 20 H 1.08002 * 120.00436 * 0.02562 * 19 18 2 21 21 C 1.38821 * 120.00150 * 180.02562 * 19 18 2 22 22 N 1.31619 * 119.99699 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00125 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47322 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.47233 * 119.99951 * 23 21 19 26 26 H 1.48501 * 109.47455 * 240.00265 * 23 21 19 27 27 H 1.09005 * 109.46793 * 299.99666 * 1 2 3 28 28 H 1.08999 * 109.47281 * 59.99409 * 1 2 3 29 29 H 1.09003 * 109.46982 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47214 * 54.99609 * 4 2 1 31 31 H 1.09000 * 109.46955 * 294.99824 * 4 2 1 32 32 H 1.08999 * 109.47441 * 270.00307 * 6 5 4 33 33 H 1.09005 * 109.47121 * 30.00515 * 6 5 4 34 34 H 1.08997 * 109.47160 * 150.00168 * 6 5 4 35 35 H 1.09000 * 109.47318 * 299.99141 * 9 7 5 36 36 H 1.09000 * 109.47161 * 59.99772 * 9 7 5 37 37 H 1.09006 * 109.45581 * 264.17743 * 11 10 9 38 38 H 1.08994 * 109.46289 * 24.14699 * 11 10 9 39 39 H 1.09001 * 109.69200 * 287.02778 * 12 11 10 40 40 H 1.09000 * 109.43561 * 166.79962 * 12 11 10 41 41 H 0.97000 * 119.49839 * 184.45740 * 15 13 12 42 42 H 0.97007 * 120.00071 * 264.99861 * 18 2 1 43 43 H 0.97003 * 119.99830 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1904 6 6 4.1259 -1.9919 0.5610 7 6 4.2676 0.1492 1.7155 8 8 3.7496 1.1143 2.2363 9 6 5.7696 0.0408 1.6556 10 7 6.3697 1.2178 2.2887 11 6 6.6697 2.3994 1.4778 12 6 6.4144 3.6633 2.3078 13 6 7.0511 3.4991 3.6650 14 8 7.5307 4.4585 4.2300 15 7 7.0869 2.2870 4.2483 16 6 6.6420 1.1957 3.6035 17 8 6.4816 0.1637 4.2251 18 7 2.0183 -0.6905 -1.1962 19 6 2.1490 -0.0073 -2.3757 20 1 1.8925 1.0407 -2.4241 21 6 2.6113 -0.6617 -3.5094 22 7 2.9234 -1.9390 -3.4505 23 14 2.7902 0.2703 -5.1182 24 1 2.3773 1.6831 -4.9204 25 1 4.2072 0.2266 -5.5607 26 1 1.9290 -0.3573 -6.1524 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6054 -1.7198 1.2951 31 1 1.7518 -0.1584 2.1369 32 1 4.2824 -2.7687 1.3094 33 1 3.4758 -2.3721 -0.2270 34 1 5.0852 -1.7020 0.1322 35 1 6.0903 -0.8583 2.1817 36 1 6.0886 -0.0139 0.6147 37 1 7.7138 2.3703 1.1661 38 1 6.0279 2.4078 0.5969 39 1 5.3415 3.8155 2.4248 40 1 6.8521 4.5240 1.8020 41 1 7.4390 2.2001 5.1479 42 1 2.2491 -1.6317 -1.1528 43 1 3.2468 -2.3962 -4.2426 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755611370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:08 Heat of formation + Delta-G solvation = -94.053179 kcal Electronic energy + Delta-G solvation = -27179.769534 eV Core-core repulsion = 23260.263718 eV Total energy + Delta-G solvation = -3919.505816 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.75616 -40.92491 -39.93924 -37.98160 -37.16037 -35.77387 -35.73037 -33.93670 -32.50133 -30.74473 -29.30400 -27.95729 -26.51445 -26.04824 -25.43881 -24.05823 -21.89371 -20.70712 -19.81712 -19.39104 -19.21112 -18.76262 -18.26914 -17.49234 -17.30048 -16.75044 -16.46034 -16.13616 -15.77611 -15.73225 -15.58848 -15.38036 -15.13949 -14.50873 -14.29660 -14.02156 -13.74234 -13.63627 -13.58590 -13.20944 -13.02704 -12.99204 -12.78748 -12.67582 -12.62311 -12.43749 -12.11069 -11.86259 -11.81056 -11.57662 -11.41567 -11.39450 -11.12910 -10.91648 -9.92084 -9.51309 -8.89531 -7.87044 -5.12283 0.60934 1.22360 1.49863 1.53523 1.60365 1.66416 1.92489 2.02633 2.35345 2.61420 3.34827 3.47053 3.54509 3.62328 3.92592 3.95685 4.07542 4.15785 4.31895 4.38847 4.40802 4.50513 4.54542 4.66990 4.72156 4.78656 4.80338 4.91200 4.92797 5.01240 5.05276 5.23821 5.28239 5.39000 5.43171 5.59252 5.70548 6.25515 6.35288 6.38548 6.49552 6.99985 7.21081 7.44028 8.16306 8.45201 9.35502 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.015684 B = 0.003843 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.872340 B = 7284.978838 C = 7908.211265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 H 0.027 0.973 4 C 0.117 3.883 5 N -0.595 5.595 6 C 0.080 3.920 7 C 0.491 3.509 8 O -0.579 6.579 9 C 0.114 3.886 10 N -0.595 5.595 11 C 0.107 3.893 12 C -0.151 4.151 13 C 0.531 3.469 14 O -0.536 6.536 15 N -0.670 5.670 16 C 0.715 3.285 17 O -0.592 6.592 18 N -0.724 5.724 19 C -0.230 4.230 20 H 0.061 0.939 21 C -0.060 4.060 22 N -0.958 5.958 23 Si 0.957 3.043 24 H -0.276 1.276 25 H -0.291 1.291 26 H -0.300 1.300 27 H 0.063 0.937 28 H 0.036 0.964 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.144 0.856 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.153 0.847 41 H 0.428 0.572 42 H 0.378 0.622 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.351 4.303 10.107 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.045 0.955 4 C -0.007 4.007 5 N -0.326 5.326 6 C -0.063 4.063 7 C 0.279 3.721 8 O -0.459 6.459 9 C -0.013 4.013 10 N -0.330 5.330 11 C -0.015 4.015 12 C -0.191 4.191 13 C 0.321 3.679 14 O -0.410 6.410 15 N -0.338 5.338 16 C 0.417 3.583 17 O -0.470 6.470 18 N -0.367 5.367 19 C -0.363 4.363 20 H 0.079 0.921 21 C -0.253 4.253 22 N -0.609 5.609 23 Si 0.788 3.212 24 H -0.201 1.201 25 H -0.218 1.218 26 H -0.228 1.228 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.144 0.856 36 H 0.162 0.838 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.171 0.829 41 H 0.269 0.731 42 H 0.214 0.786 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.186 4.932 10.672 14.326 hybrid contribution -0.118 -0.008 -0.667 0.678 sum 8.068 4.924 10.005 13.763 Atomic orbital electron populations 1.22243 0.97370 1.01325 1.00584 1.20720 0.92891 0.94926 0.86740 0.95478 1.21703 0.79665 1.01661 0.97648 1.47705 1.06528 1.21790 1.56594 1.21996 0.99354 0.87117 0.97792 1.21529 0.91049 0.82055 0.77472 1.90625 1.75759 1.32676 1.46844 1.21503 0.88286 0.89568 1.01908 1.46738 1.62680 1.17578 1.06024 1.22026 1.04314 0.80883 0.94228 1.22361 1.04166 1.01872 0.90737 1.21435 0.76555 0.81178 0.88704 1.90769 1.44899 1.39080 1.66295 1.44191 1.61436 1.07502 1.20658 1.15646 0.77163 0.83111 0.82388 1.90959 1.58398 1.31378 1.66220 1.42558 1.78323 1.10314 1.05474 1.19450 1.34674 0.93662 0.88469 0.92064 1.25222 1.03202 0.96703 1.00210 1.69745 1.52644 1.09494 1.29041 0.85316 0.76838 0.78004 0.81004 1.20127 1.21827 1.22768 0.91786 0.94460 0.92895 0.89348 0.90211 0.90543 0.91512 0.89936 0.85624 0.83827 0.87163 0.87152 0.86989 0.82929 0.73065 0.78641 0.94115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 9.49 71.98 0.68 -4.56 16 2 C 0.16 5.89 3.20 44.99 0.14 6.03 16 3 H 0.03 1.15 8.08 -2.39 -0.02 1.13 16 4 C 0.12 3.68 5.05 86.38 0.44 4.11 16 5 N -0.60 -17.77 2.73 -846.75 -2.31 -20.08 16 6 C 0.08 2.07 9.86 127.77 1.26 3.33 16 7 C 0.49 14.84 7.74 87.66 0.68 15.52 16 8 O -0.58 -21.03 16.01 -3.03 -0.05 -21.08 16 9 C 0.11 2.51 4.39 85.63 0.38 2.89 16 10 N -0.60 -12.73 2.28 -844.98 -1.93 -14.65 16 11 C 0.11 1.57 6.60 86.51 0.57 2.14 16 12 C -0.15 -2.32 6.30 30.00 0.19 -2.13 16 13 C 0.53 11.05 7.76 87.72 0.68 11.73 16 14 O -0.54 -14.11 17.93 -2.87 -0.05 -14.16 16 15 N -0.67 -14.30 5.18 -441.65 -2.29 -16.59 16 16 C 0.72 18.03 8.22 179.34 1.47 19.50 16 17 O -0.59 -18.73 16.57 -3.84 -0.06 -18.80 16 18 N -0.72 -32.39 4.57 -322.94 -1.47 -33.87 16 19 C -0.23 -11.77 9.93 84.04 0.83 -10.93 16 20 H 0.06 3.16 7.83 -2.91 -0.02 3.14 16 21 C -0.06 -3.16 5.50 84.86 0.47 -2.69 16 22 N -0.96 -52.44 13.06 21.65 0.28 -52.16 16 23 Si 0.96 43.14 29.55 68.60 2.03 45.17 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 26 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 27 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 2.49 8.07 -2.39 -0.02 2.47 16 31 H 0.08 2.52 7.42 -2.39 -0.02 2.50 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 2.15 5.63 -2.38 -0.01 2.14 16 34 H 0.08 1.88 6.44 -2.39 -0.02 1.86 16 35 H 0.13 2.65 7.24 -2.39 -0.02 2.64 16 36 H 0.14 2.45 7.32 -2.39 -0.02 2.43 16 37 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.11 1.61 8.01 -2.39 -0.02 1.59 16 39 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.43 8.16 8.86 -92.71 -0.82 7.34 16 42 H 0.38 17.45 5.33 -92.70 -0.49 16.95 16 43 H 0.25 13.42 8.31 -92.71 -0.77 12.65 16 Total: -1.00 -71.97 358.75 1.68 -70.29 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: -0.26 Total: 30.99 kcal Atomic # 6 Polarization: 37.15 SS G_CDS: 7.79 Total: 44.94 kcal Atomic # 7 Polarization: -129.64 SS G_CDS: -7.72 Total: -137.35 kcal Atomic # 8 Polarization: -53.88 SS G_CDS: -0.16 Total: -54.04 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -71.97 1.68 -70.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755611370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.762 kcal (2) G-P(sol) polarization free energy of solvation -71.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds