Wall clock time and date at job start Fri Apr 10 2020 18:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00050 * 2 1 4 4 H 1.48502 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46975 * 299.99826 * 3 2 1 6 6 H 1.48498 * 109.47170 * 59.99754 * 3 2 1 7 7 C 1.37874 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00362 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99700 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47136 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47011 * 55.00017 * 11 10 9 13 13 N 1.46895 * 109.47263 * 294.99687 * 11 10 9 14 14 C 1.50702 * 109.46732 * 174.99999 * 11 10 9 15 15 O 1.21283 * 120.00262 * 100.00162 * 14 11 10 16 16 N 1.34777 * 119.99928 * 279.72068 * 14 11 10 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 11 18 18 C 1.50694 * 109.47550 * 180.02562 * 17 16 14 19 19 O 1.20826 * 120.00083 * 0.02562 * 18 17 16 20 20 O 1.34226 * 120.00427 * 179.97438 * 18 17 16 21 21 C 1.45202 * 117.00501 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.47029 * 270.00641 * 21 20 18 23 23 C 1.53002 * 109.46874 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.47550 * 59.99625 * 23 22 21 25 25 C 1.53002 * 109.46985 * 300.00185 * 24 23 22 26 26 C 1.52992 * 109.47383 * 150.00030 * 21 20 18 27 27 H 0.97000 * 120.00058 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47462 * 59.99624 * 9 7 2 29 29 H 1.09001 * 109.47503 * 299.99203 * 9 7 2 30 30 H 1.08995 * 109.46737 * 59.99327 * 10 9 7 31 31 H 1.09001 * 109.46469 * 300.00172 * 10 9 7 32 32 H 1.00901 * 111.00088 * 300.00693 * 13 11 10 33 33 H 1.00898 * 111.00134 * 63.95809 * 13 11 10 34 34 H 0.97000 * 120.00317 * 0.28382 * 16 14 11 35 35 H 1.08998 * 109.47134 * 300.00670 * 17 16 14 36 36 H 1.09002 * 109.46857 * 59.99862 * 17 16 14 37 37 H 1.08999 * 109.46929 * 30.00077 * 21 20 18 38 38 H 1.09003 * 109.46871 * 299.98990 * 22 21 20 39 39 H 1.08997 * 109.47345 * 59.99603 * 22 21 20 40 40 H 1.08999 * 109.47094 * 299.99442 * 23 22 21 41 41 H 1.09001 * 109.47454 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.47204 * 179.97438 * 24 23 22 43 43 H 1.08999 * 109.47072 * 59.99803 * 24 23 22 44 44 H 1.08999 * 109.46904 * 299.99721 * 25 24 23 45 45 H 1.08997 * 109.46991 * 179.97438 * 25 24 23 46 46 H 1.08996 * 109.47629 * 300.00208 * 26 21 20 47 47 H 1.09003 * 109.47442 * 60.00444 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 1 0.7879 -5.0072 -0.8404 13 7 0.7290 -5.1181 1.2567 14 6 2.4549 -6.1298 -0.1227 15 8 2.7871 -6.7531 0.8633 16 7 2.9530 -6.4628 -1.3299 17 6 3.8958 -7.5775 -1.4512 18 6 4.2981 -7.7406 -2.8943 19 8 3.8442 -7.0011 -3.7352 20 8 5.1614 -8.7065 -3.2454 21 6 5.5042 -8.8046 -4.6530 22 6 4.5236 -9.7484 -5.3521 23 6 4.8845 -9.8513 -6.8354 24 6 6.3068 -10.3967 -6.9777 25 6 7.2873 -9.4529 -6.2785 26 6 6.9264 -9.3504 -4.7947 27 1 -0.4850 0.8400 0.0004 28 1 0.6246 -2.5570 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8904 31 1 2.8719 -3.6043 -0.8895 32 1 1.3491 -5.1021 2.0525 33 1 0.0242 -4.4001 1.3330 34 1 2.6874 -5.9643 -2.1185 35 1 4.7806 -7.3722 -0.8487 36 1 3.4218 -8.4941 -1.1000 37 1 5.4467 -7.8170 -5.1106 38 1 4.5812 -10.7361 -4.8945 39 1 3.5104 -9.3596 -5.2511 40 1 4.8267 -8.8635 -7.2927 41 1 4.1857 -10.5232 -7.3336 42 1 6.5637 -10.4704 -8.0344 43 1 6.3646 -11.3845 -6.5204 44 1 7.2296 -8.4652 -6.7359 45 1 8.3006 -9.8417 -6.3795 46 1 7.6250 -8.6780 -4.2967 47 1 6.9839 -10.3380 -4.3372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818140989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:07 Heat of formation + Delta-G solvation = -158.293197 kcal Electronic energy + Delta-G solvation = -25652.279224 eV Core-core repulsion = 21833.528096 eV Total energy + Delta-G solvation = -3818.751129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.11145 -39.65697 -38.53432 -36.47688 -35.56860 -34.50077 -32.84823 -31.29849 -30.75331 -29.89534 -28.79748 -26.18425 -23.97755 -23.20139 -22.96141 -21.16741 -20.73104 -20.38427 -19.96401 -18.10989 -17.56513 -16.74697 -16.63886 -16.21926 -16.04082 -15.33066 -15.00218 -14.73981 -14.52394 -14.46558 -14.29920 -14.05296 -13.72795 -13.46487 -13.17527 -13.11156 -12.91059 -12.73327 -12.59499 -12.15336 -11.79901 -11.68818 -11.62396 -11.40711 -11.25551 -11.09396 -10.94243 -10.89931 -10.73943 -10.66589 -10.37429 -9.99122 -9.97903 -9.33374 -9.21296 -9.20498 -8.43693 -8.21428 -6.07937 -4.10844 1.83721 2.07416 2.82779 3.25575 3.26950 3.34824 3.38902 4.12703 4.18453 4.19753 4.40160 4.47518 4.67148 4.68215 4.87749 4.92953 4.96322 4.97923 5.03234 5.11431 5.16699 5.22417 5.28402 5.33331 5.44549 5.53714 5.57844 5.59478 5.63158 5.71056 5.74582 5.77299 5.86823 6.13112 6.27305 6.30193 6.51277 6.87557 7.35165 7.39185 7.52001 7.58978 7.65262 7.88667 7.90132 8.30917 8.34131 8.95244 9.54052 11.03028 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.002320 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.861096 B =12065.850436 C =13123.834767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.139 4.139 11 C 0.077 3.923 12 H 0.099 0.901 13 N -0.830 5.830 14 C 0.532 3.468 15 O -0.536 6.536 16 N -0.729 5.729 17 C 0.129 3.871 18 C 0.459 3.541 19 O -0.499 6.499 20 O -0.349 6.349 21 C 0.089 3.911 22 C -0.136 4.136 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.117 4.117 26 C -0.116 4.116 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.346 0.654 33 H 0.356 0.644 34 H 0.413 0.587 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.878 -22.012 -12.307 27.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.178 4.178 11 C -0.038 4.038 12 H 0.117 0.883 13 N -0.363 5.363 14 C 0.319 3.681 15 O -0.411 6.411 16 N -0.387 5.387 17 C 0.004 3.996 18 C 0.302 3.698 19 O -0.386 6.386 20 O -0.265 6.265 21 C 0.035 3.965 22 C -0.174 4.174 23 C -0.154 4.154 24 C -0.161 4.161 25 C -0.154 4.154 26 C -0.154 4.154 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.171 0.829 34 H 0.251 0.749 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.618 -22.861 -12.159 28.381 hybrid contribution 0.691 2.224 -0.355 2.356 sum 12.309 -20.637 -12.514 27.092 Atomic orbital electron populations 1.69958 1.06006 1.26665 1.50561 1.25017 0.94882 0.99329 0.95159 0.86525 0.80099 0.83683 0.77640 1.19773 1.20950 1.20947 1.21214 0.93063 0.90871 1.50932 0.92658 1.19115 0.93720 0.91087 0.97426 1.22402 0.99952 0.93866 1.01620 1.21446 0.94587 0.91936 0.95811 0.88280 1.58740 1.18448 1.55986 1.03085 1.20947 0.80919 0.84510 0.81733 1.90649 1.60021 1.53405 1.37000 1.45839 1.47047 1.34348 1.11507 1.20570 0.96197 0.93483 0.89353 1.23612 0.76339 0.77721 0.92155 1.90688 1.52174 1.43409 1.52370 1.86523 1.58246 1.51478 1.30290 1.22857 0.95368 1.00800 0.77524 1.21953 0.99195 1.00191 0.96044 1.21491 0.96871 1.01937 0.95118 1.21607 0.94635 0.99190 1.00712 1.21526 0.99449 1.00461 0.94008 1.21632 0.93818 1.02497 0.97418 0.92939 0.96249 0.96327 0.92562 0.92406 0.84097 0.82870 0.74879 0.87196 0.87162 0.89432 0.90777 0.91187 0.91496 0.91182 0.91527 0.91624 0.91499 0.90920 0.90838 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.58 4.74 -27.88 -0.13 0.44 16 10 C -0.14 -2.73 4.78 -26.73 -0.13 -2.86 16 11 C 0.08 1.32 3.21 -68.87 -0.22 1.10 16 12 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 13 N -0.83 -14.17 8.94 -5.66 -0.05 -14.23 16 14 C 0.53 8.69 7.08 -10.98 -0.08 8.61 16 15 O -0.54 -10.01 16.25 5.55 0.09 -9.92 16 16 N -0.73 -9.83 5.53 -61.47 -0.34 -10.17 16 17 C 0.13 1.43 6.27 -5.20 -0.03 1.40 16 18 C 0.46 5.18 8.00 36.00 0.29 5.47 16 19 O -0.50 -6.81 14.89 -18.75 -0.28 -7.09 16 20 O -0.35 -3.49 9.88 -39.25 -0.39 -3.88 16 21 C 0.09 0.77 2.45 -26.74 -0.07 0.70 16 22 C -0.14 -1.04 5.56 -26.73 -0.15 -1.19 16 23 C -0.12 -0.71 5.92 -26.73 -0.16 -0.87 16 24 C -0.12 -0.63 5.92 -26.73 -0.16 -0.79 16 25 C -0.12 -0.62 5.93 -26.70 -0.16 -0.78 16 26 C -0.12 -0.76 5.59 -26.71 -0.15 -0.91 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.02 0.47 6.87 -51.93 -0.36 0.11 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.35 5.93 8.58 -39.29 -0.34 5.59 16 33 H 0.36 6.09 7.55 -39.29 -0.30 5.80 16 34 H 0.41 5.45 7.44 -40.82 -0.30 5.15 16 35 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.09 0.86 7.16 -51.93 -0.37 0.49 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 383.55 15.07 5.78 5.78 Total: -1.00 -31.97 383.55 -9.00 -40.97 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -7.97 Total: 10.44 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -1.55 Total: -2.89 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.35 Total: -49.82 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.58 Total: -20.89 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.97 -9.00 -40.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818140989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.328 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds